Wall clock time and date at job start Wed Apr 1 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46591 * 2 1 4 4 S 1.80994 * 109.47048 * 240.00087 * 2 1 3 5 5 C 1.76203 * 100.00284 * 65.00069 * 4 2 1 6 6 N 1.32466 * 119.60175 * 0.02562 * 5 4 2 7 7 C 1.32306 * 121.84482 * 179.97438 * 6 5 4 8 8 N 1.38021 * 119.59776 * 180.02562 * 7 6 5 9 9 C 1.40915 * 120.80898 * 359.97438 * 7 6 5 10 10 C 1.43205 * 120.43335 * 180.02562 * 9 7 6 11 11 N 7.56718 * 76.11948 * 299.59058 * 2 1 3 12 12 C 1.39685 * 119.13030 * 359.76887 * 9 7 6 13 13 C 1.39694 * 118.31478 * 0.49163 * 12 9 7 14 14 C 1.43205 * 120.44396 * 179.76048 * 13 12 9 15 15 N 5.44093 * 106.88684 * 245.58333 * 2 1 3 16 16 C 1.50697 * 109.47076 * 120.00096 * 2 1 3 17 17 O 1.21279 * 119.99950 * 100.00318 * 16 2 1 18 18 N 1.34779 * 119.99552 * 280.00014 * 16 2 1 19 19 C 1.46495 * 120.00351 * 0.02562 * 18 16 2 20 20 C 1.46507 * 119.99528 * 180.02562 * 18 16 2 21 21 C 1.50695 * 109.47087 * 90.00355 * 20 18 16 22 22 H 1.07997 * 119.99933 * 359.97438 * 21 20 18 23 23 C 1.37876 * 120.00168 * 180.02562 * 21 20 18 24 24 N 1.31514 * 119.99948 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99993 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47132 * 89.99800 * 25 23 21 27 27 H 1.48501 * 109.46790 * 209.99621 * 25 23 21 28 28 H 1.48493 * 109.47094 * 329.99549 * 25 23 21 29 29 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47705 * 299.99736 * 1 2 3 31 31 H 1.09006 * 109.47357 * 60.00183 * 1 2 3 32 32 H 0.97005 * 119.99859 * 359.97438 * 8 7 6 33 33 H 0.97003 * 120.00564 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.84597 * 180.28532 * 12 9 7 35 35 H 1.09002 * 109.47683 * 89.99628 * 19 18 16 36 36 H 1.09004 * 109.47130 * 210.00045 * 19 18 16 37 37 H 1.09004 * 109.46753 * 329.99087 * 19 18 16 38 38 H 1.09001 * 109.47223 * 210.00609 * 20 18 16 39 39 H 1.08998 * 109.47183 * 329.99812 * 20 18 16 40 40 H 0.96997 * 120.00484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 16 2.1333 -0.8532 -1.4778 5 6 1.5439 0.2423 -2.7257 6 7 0.8677 1.3270 -2.3781 7 6 0.4054 2.1797 -3.2779 8 7 -0.2931 3.2958 -2.8637 9 6 0.6183 1.9629 -4.6539 10 6 0.1147 2.8914 -5.6209 11 7 -0.2853 3.6275 -6.3881 12 6 1.3315 0.8334 -5.0620 13 6 1.7982 -0.0455 -4.0815 14 6 2.5301 -1.2203 -4.4491 15 7 3.1105 -2.1521 -4.7407 16 6 2.0323 -0.7104 1.2304 17 8 2.4065 -1.8616 1.1557 18 7 2.0658 -0.0663 2.4139 19 6 1.6134 1.3241 2.5042 20 6 2.5547 -0.7568 3.6100 21 6 4.0412 -0.5461 3.7393 22 1 4.5691 0.0428 3.0039 23 6 4.7276 -1.1060 4.7959 24 7 4.0848 -1.8236 5.6912 25 14 6.5704 -0.8454 4.9558 26 1 6.8297 0.3770 5.7581 27 1 7.1795 -2.0193 5.6313 28 1 7.1669 -0.6868 3.6052 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.4427 3.4509 -1.9179 33 1 -0.6350 3.9246 -3.5184 34 1 1.5147 0.6426 -6.1090 35 1 0.5472 1.3455 2.7297 36 1 2.1625 1.8341 3.2958 37 1 1.7942 1.8274 1.5544 38 1 2.0530 -0.3567 4.4911 39 1 2.3448 -1.8230 3.5253 40 1 4.5675 -2.2173 6.4347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072850520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:32 Heat of formation + Delta-G solvation = 73.069438 kcal Electronic energy + Delta-G solvation = -26326.975679 eV Core-core repulsion = 22461.988339 eV Total energy + Delta-G solvation = -3864.987340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96896 -39.26936 -37.28633 -36.80981 -35.31931 -35.01042 -33.77739 -32.95742 -32.17926 -30.58780 -27.88763 -26.09061 -25.64179 -24.58558 -24.27487 -22.49818 -20.95015 -19.43810 -18.73114 -18.19002 -17.56194 -16.86848 -16.50022 -16.15144 -16.01401 -15.58487 -15.25416 -14.75546 -14.51147 -14.09436 -14.00705 -13.90917 -13.78558 -13.58299 -13.34981 -13.29950 -13.11357 -13.00220 -12.64815 -12.33202 -12.25000 -11.99545 -11.94288 -11.87724 -11.51242 -11.26630 -10.94730 -10.66905 -10.55178 -10.41463 -10.22675 -10.20937 -9.70389 -9.14896 -8.89980 -8.48887 -7.89506 -7.79271 -6.10068 -4.15261 -0.01641 0.42134 1.04871 1.75295 2.12327 2.23296 2.49166 2.75078 2.91705 3.17890 3.27406 3.34951 3.35715 3.39446 3.45204 3.68128 3.74713 3.95410 4.31362 4.40145 4.59807 4.78108 4.88547 5.02865 5.05033 5.18306 5.24983 5.45821 5.50561 5.63785 5.74573 5.81801 6.03406 6.15957 6.32413 6.57470 6.89339 6.98217 7.27638 7.32460 7.37506 7.39284 7.85232 8.14672 8.20046 8.74211 8.91754 9.50147 10.98099 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.002705 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.135352 B =10348.638122 C =11137.568959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 H 0.125 0.875 4 S 0.069 5.931 5 C 0.225 3.775 6 N -0.543 5.543 7 C 0.493 3.507 8 N -0.824 5.824 9 C -0.174 4.174 10 C 0.263 3.737 11 N -0.419 5.419 12 C 0.085 3.915 13 C -0.128 4.128 14 C 0.257 3.743 15 N -0.398 5.398 16 C 0.521 3.479 17 O -0.526 6.526 18 N -0.590 5.590 19 C 0.079 3.921 20 C 0.246 3.754 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.416 0.584 33 H 0.413 0.587 34 H 0.157 0.843 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.046 0.954 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 12.180 -17.459 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.248 4.248 3 H 0.143 0.857 4 S 0.316 5.684 5 C -0.030 4.030 6 N -0.267 5.267 7 C 0.244 3.756 8 N -0.364 5.364 9 C -0.189 4.189 10 C -0.052 4.052 11 N -0.095 5.095 12 C 0.054 3.946 13 C -0.144 4.144 14 C -0.059 4.059 15 N -0.074 5.074 16 C 0.304 3.696 17 O -0.404 6.404 18 N -0.322 5.322 19 C -0.065 4.065 20 C 0.127 3.873 21 C -0.568 4.568 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.247 0.753 33 H 0.244 0.756 34 H 0.175 0.825 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.714 10.211 -17.957 23.270 hybrid contribution 0.217 1.750 0.098 1.766 sum -10.497 11.961 -17.859 23.921 Atomic orbital electron populations 1.22009 0.90120 1.03682 1.04163 1.23808 1.02048 1.04287 0.94686 0.85736 1.87032 1.62995 1.24418 0.93920 1.23853 0.90288 0.93330 0.95566 1.67855 1.19309 1.05327 1.34204 1.18213 0.84711 0.85760 0.86894 1.42287 1.58232 1.23213 1.12660 1.15850 1.15120 0.99000 0.88923 1.25146 0.93362 0.93167 0.93485 1.81338 1.10156 1.09888 1.08146 1.21266 0.86052 0.87583 0.99702 1.15829 1.10889 0.95564 0.92105 1.24937 0.93539 0.92653 0.94776 1.81287 1.09441 1.10194 1.06446 1.19427 0.79566 0.86897 0.83702 1.90737 1.48025 1.17071 1.84531 1.48061 1.61828 1.12667 1.09651 1.21762 0.98995 0.83379 1.02328 1.19372 0.94342 0.93768 0.79822 1.21395 0.92912 1.32902 1.09567 0.92377 1.24930 0.98728 0.94795 0.95566 1.69922 1.36214 1.33690 1.13409 0.86491 0.84967 0.77676 0.78295 1.20616 1.21027 1.19785 0.91461 0.90968 0.89583 0.75290 0.75571 0.82535 0.93327 0.90442 0.92245 0.94671 0.93637 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.87 37.16 0.33 -1.16 16 2 C -0.12 -1.56 1.82 -27.88 -0.05 -1.61 16 3 H 0.12 1.46 6.13 -51.92 -0.32 1.14 16 4 S 0.07 0.95 19.72 -107.50 -2.12 -1.17 16 5 C 0.22 2.20 6.82 -16.27 -0.11 2.09 16 6 N -0.54 -4.37 6.83 -10.62 -0.07 -4.44 16 7 C 0.49 3.02 7.75 -155.37 -1.20 1.82 16 8 N -0.82 -2.92 8.96 31.28 0.28 -2.64 16 9 C -0.17 -1.03 5.77 -106.42 -0.61 -1.65 16 10 C 0.26 1.81 14.08 -22.47 -0.32 1.49 16 11 N -0.42 -3.78 18.54 41.84 0.78 -3.01 16 12 C 0.08 0.49 9.61 -38.50 -0.37 0.12 16 13 C -0.13 -1.10 5.77 -106.41 -0.61 -1.71 16 14 C 0.26 2.85 14.28 -22.47 -0.32 2.53 16 15 N -0.40 -5.42 18.54 41.83 0.78 -4.65 16 16 C 0.52 10.03 6.85 -10.99 -0.08 9.95 16 17 O -0.53 -12.61 15.62 5.56 0.09 -12.52 16 18 N -0.59 -11.56 2.86 -182.95 -0.52 -12.09 16 19 C 0.08 1.10 9.56 59.84 0.57 1.67 16 20 C 0.25 6.13 5.16 -5.19 -0.03 6.11 16 21 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 22 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 25 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.69 6.94 -51.93 -0.36 0.33 16 31 H 0.09 0.75 5.65 -51.93 -0.29 0.46 16 32 H 0.42 0.96 8.95 -40.82 -0.37 0.59 16 33 H 0.41 1.09 7.63 -40.82 -0.31 0.77 16 34 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 36 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.06 0.65 5.94 -51.93 -0.31 0.34 16 38 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -34.74 371.17 -6.68 -41.42 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -3.97 Total: -4.15 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -3.22 Total: 6.45 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 1.97 Total: -52.07 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.12 Total: -1.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.74 -6.68 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072850520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.486 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds