Wall clock time and date at job start Wed Apr 1 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46591 * 2 1 4 4 S 1.80994 * 109.47048 * 240.00087 * 2 1 3 5 5 C 1.76203 * 100.00284 * 65.00069 * 4 2 1 6 6 N 1.32466 * 119.60175 * 0.02562 * 5 4 2 7 7 C 1.32306 * 121.84482 * 179.97438 * 6 5 4 8 8 N 1.38021 * 119.59776 * 180.02562 * 7 6 5 9 9 C 1.40915 * 120.80898 * 359.97438 * 7 6 5 10 10 C 1.43205 * 120.43335 * 180.02562 * 9 7 6 11 11 N 7.56718 * 76.11948 * 299.59058 * 2 1 3 12 12 C 1.39685 * 119.13030 * 359.76887 * 9 7 6 13 13 C 1.39694 * 118.31478 * 0.49163 * 12 9 7 14 14 C 1.43205 * 120.44396 * 179.76048 * 13 12 9 15 15 N 5.44093 * 106.88684 * 245.58333 * 2 1 3 16 16 C 1.50697 * 109.47076 * 120.00096 * 2 1 3 17 17 O 1.21279 * 119.99950 * 100.00318 * 16 2 1 18 18 N 1.34779 * 119.99552 * 280.00014 * 16 2 1 19 19 C 1.46495 * 120.00351 * 0.02562 * 18 16 2 20 20 C 1.46507 * 119.99528 * 180.02562 * 18 16 2 21 21 C 1.50695 * 109.47087 * 90.00355 * 20 18 16 22 22 H 1.07997 * 119.99933 * 359.97438 * 21 20 18 23 23 C 1.37876 * 120.00168 * 180.02562 * 21 20 18 24 24 N 1.31514 * 119.99948 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99993 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47132 * 89.99800 * 25 23 21 27 27 H 1.48501 * 109.46790 * 209.99621 * 25 23 21 28 28 H 1.48493 * 109.47094 * 329.99549 * 25 23 21 29 29 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47705 * 299.99736 * 1 2 3 31 31 H 1.09006 * 109.47357 * 60.00183 * 1 2 3 32 32 H 0.97005 * 119.99859 * 359.97438 * 8 7 6 33 33 H 0.97003 * 120.00564 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.84597 * 180.28532 * 12 9 7 35 35 H 1.09002 * 109.47683 * 89.99628 * 19 18 16 36 36 H 1.09004 * 109.47130 * 210.00045 * 19 18 16 37 37 H 1.09004 * 109.46753 * 329.99087 * 19 18 16 38 38 H 1.09001 * 109.47223 * 210.00609 * 20 18 16 39 39 H 1.08998 * 109.47183 * 329.99812 * 20 18 16 40 40 H 0.96997 * 120.00484 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 16 2.1333 -0.8532 -1.4778 5 6 1.5439 0.2423 -2.7257 6 7 0.8677 1.3270 -2.3781 7 6 0.4054 2.1797 -3.2779 8 7 -0.2931 3.2958 -2.8637 9 6 0.6183 1.9629 -4.6539 10 6 0.1147 2.8914 -5.6209 11 7 -0.2853 3.6275 -6.3881 12 6 1.3315 0.8334 -5.0620 13 6 1.7982 -0.0455 -4.0815 14 6 2.5301 -1.2203 -4.4491 15 7 3.1105 -2.1521 -4.7407 16 6 2.0323 -0.7104 1.2304 17 8 2.4065 -1.8616 1.1557 18 7 2.0658 -0.0663 2.4139 19 6 1.6134 1.3241 2.5042 20 6 2.5547 -0.7568 3.6100 21 6 4.0412 -0.5461 3.7393 22 1 4.5691 0.0428 3.0039 23 6 4.7276 -1.1060 4.7959 24 7 4.0848 -1.8236 5.6912 25 14 6.5704 -0.8454 4.9558 26 1 6.8297 0.3770 5.7581 27 1 7.1795 -2.0193 5.6313 28 1 7.1669 -0.6868 3.6052 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.4427 3.4509 -1.9179 33 1 -0.6350 3.9246 -3.5184 34 1 1.5147 0.6426 -6.1090 35 1 0.5472 1.3455 2.7297 36 1 2.1625 1.8341 3.2958 37 1 1.7942 1.8274 1.5544 38 1 2.0530 -0.3567 4.4911 39 1 2.3448 -1.8230 3.5253 40 1 4.5675 -2.2173 6.4347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072850520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:32 Heat of formation + Delta-G solvation = 49.715258 kcal Electronic energy + Delta-G solvation = -26327.988392 eV Core-core repulsion = 22461.988339 eV Total energy + Delta-G solvation = -3866.000053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58625 -40.79377 -38.01578 -37.54582 -36.67098 -35.88673 -35.06104 -34.28718 -33.39909 -31.18451 -29.70961 -27.43893 -26.31204 -26.00565 -24.88983 -24.13306 -21.63402 -20.58191 -19.45167 -19.07210 -18.70732 -18.23060 -18.08959 -17.28526 -16.68050 -16.50751 -16.33953 -16.20804 -15.82839 -15.20402 -14.84129 -14.74624 -14.60073 -14.49698 -14.33718 -14.20818 -14.05396 -14.01702 -13.92259 -13.54514 -13.44862 -13.28037 -13.11807 -13.03888 -12.83754 -12.78860 -12.52318 -12.21100 -12.17852 -11.72060 -11.37398 -11.16540 -10.92993 -10.65828 -10.63394 -9.54948 -9.45397 -8.75291 -8.22607 -6.36720 -0.65939 -0.14681 0.11613 0.82322 1.36896 1.40368 1.50136 1.54149 1.59317 1.66397 1.73475 2.21731 2.24105 2.27644 2.42976 2.73162 2.79254 3.00299 3.07752 3.39066 3.53545 3.66802 3.87541 4.00616 4.08975 4.47349 4.50515 4.58312 4.69190 4.82627 4.85453 4.94338 5.00659 5.02070 5.23011 5.28785 5.54203 5.80543 5.86377 6.05237 6.15776 6.43681 6.50216 6.63251 6.73665 6.88143 7.23833 7.38746 8.84466 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.015646 B = 0.002705 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.135352 B =10348.638122 C =11137.568959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.148 0.852 4 S -0.009 6.009 5 C 0.239 3.761 6 N -0.545 5.545 7 C 0.498 3.502 8 N -0.805 5.805 9 C -0.161 4.161 10 C 0.288 3.712 11 N -0.450 5.450 12 C 0.108 3.892 13 C -0.135 4.135 14 C 0.280 3.720 15 N -0.453 5.453 16 C 0.510 3.490 17 O -0.586 6.586 18 N -0.598 5.598 19 C 0.073 3.927 20 C 0.260 3.740 21 C -0.542 4.542 22 H 0.054 0.946 23 C 0.009 3.991 24 N -0.927 5.927 25 Si 0.964 3.036 26 H -0.261 1.261 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.426 0.574 33 H 0.421 0.579 34 H 0.187 0.813 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.030 0.970 39 H -0.001 1.001 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 15.683 -19.100 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.221 4.221 3 H 0.165 0.835 4 S 0.237 5.763 5 C -0.017 4.017 6 N -0.269 5.269 7 C 0.248 3.752 8 N -0.345 5.345 9 C -0.176 4.176 10 C -0.027 4.027 11 N -0.126 5.126 12 C 0.077 3.923 13 C -0.152 4.152 14 C -0.036 4.036 15 N -0.129 5.129 16 C 0.297 3.703 17 O -0.467 6.467 18 N -0.328 5.328 19 C -0.069 4.069 20 C 0.139 3.861 21 C -0.580 4.580 22 H 0.072 0.928 23 C -0.190 4.190 24 N -0.567 5.567 25 Si 0.788 3.212 26 H -0.186 1.186 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.259 0.741 33 H 0.254 0.746 34 H 0.204 0.796 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.017 0.983 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.775 13.825 -19.609 26.726 hybrid contribution 0.397 0.800 0.537 1.042 sum -11.377 14.625 -19.072 26.591 Atomic orbital electron populations 1.22037 0.87705 1.03328 1.06110 1.23586 1.03528 1.03767 0.91227 0.83474 1.87357 1.65366 1.27389 0.96208 1.23240 0.90949 0.93307 0.94183 1.67746 1.19459 1.05072 1.34613 1.18261 0.84366 0.85874 0.86689 1.42335 1.56500 1.22023 1.13657 1.15777 1.14528 0.98583 0.88664 1.24989 0.92453 0.92450 0.92793 1.81396 1.11199 1.10939 1.09104 1.21489 0.84098 0.86191 1.00483 1.15783 1.11846 0.95488 0.92071 1.25281 0.92519 0.92445 0.93324 1.81299 1.11456 1.11883 1.08276 1.20401 0.78378 0.86484 0.85051 1.90702 1.50399 1.19917 1.85658 1.48042 1.61656 1.14757 1.08362 1.22100 1.00585 0.80050 1.04172 1.18807 0.93537 0.91759 0.82042 1.21684 0.94264 1.32711 1.09373 0.92817 1.25817 1.03445 0.94473 0.95298 1.70037 1.38047 1.34583 1.14017 0.85466 0.79231 0.78207 0.78249 1.18627 1.20854 1.19880 0.93088 0.89341 0.87067 0.74124 0.74644 0.79612 0.90217 0.91233 0.88648 0.95187 0.98330 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.87 71.98 0.64 -1.89 16 2 C -0.09 -2.30 1.82 29.85 0.05 -2.25 16 3 H 0.15 3.02 6.13 -2.40 -0.01 3.01 16 4 S -0.01 -0.24 19.72 -56.49 -1.11 -1.35 16 5 C 0.24 4.20 6.82 85.25 0.58 4.78 16 6 N -0.55 -6.85 6.83 -187.51 -1.28 -8.13 16 7 C 0.50 4.00 7.75 133.86 1.04 5.04 16 8 N -0.81 -2.02 8.96 -54.96 -0.49 -2.52 16 9 C -0.16 -1.24 5.77 -21.03 -0.12 -1.36 16 10 C 0.29 2.84 14.08 88.33 1.24 4.09 16 11 N -0.45 -6.71 18.54 19.01 0.35 -6.36 16 12 C 0.11 0.86 9.61 22.97 0.22 1.08 16 13 C -0.14 -2.04 5.77 -21.02 -0.12 -2.16 16 14 C 0.28 6.07 14.28 88.33 1.26 7.33 16 15 N -0.45 -12.61 18.54 19.00 0.35 -12.26 16 16 C 0.51 20.10 6.85 87.66 0.60 20.70 16 17 O -0.59 -29.79 15.62 -3.03 -0.05 -29.84 16 18 N -0.60 -23.62 2.86 -851.13 -2.43 -26.05 16 19 C 0.07 1.85 9.56 127.77 1.22 3.08 16 20 C 0.26 13.53 5.16 85.63 0.44 13.98 16 21 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 22 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 23 C 0.01 0.50 5.46 84.65 0.46 0.97 16 24 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 25 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 26 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.40 6.94 -2.39 -0.02 1.38 16 31 H 0.11 1.55 5.65 -2.38 -0.01 1.54 16 32 H 0.43 -0.11 8.95 -92.70 -0.83 -0.94 16 33 H 0.42 0.33 7.63 -92.71 -0.71 -0.37 16 34 H 0.19 0.45 8.06 -2.91 -0.02 0.42 16 35 H 0.08 1.56 7.66 -2.39 -0.02 1.54 16 36 H 0.07 1.91 8.07 -2.38 -0.02 1.89 16 37 H 0.10 1.73 5.94 -2.39 -0.01 1.72 16 38 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 39 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 40 H 0.27 15.00 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -81.69 371.17 5.02 -76.67 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: -0.39 Total: -4.66 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 7.76 Total: 23.05 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -3.22 Total: -110.44 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.05 Total: -29.84 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.11 Total: -1.35 kcal Total: -81.69 5.02 -76.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072850520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.384 kcal (2) G-P(sol) polarization free energy of solvation -81.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds