Wall clock time and date at job start Wed Apr 1 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46996 * 2 1 4 4 C 1.46498 * 120.00241 * 270.00163 * 3 2 1 5 5 C 1.50708 * 109.46766 * 269.99962 * 4 3 2 6 6 H 1.07991 * 119.99975 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99492 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00247 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99749 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47071 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47319 * 120.00073 * 9 7 5 12 12 H 1.48501 * 109.47038 * 240.00406 * 9 7 5 13 13 C 1.34781 * 119.99805 * 90.00383 * 3 2 1 14 14 O 1.21279 * 119.99797 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99753 * 359.97438 * 13 3 2 16 16 S 1.81005 * 109.46895 * 180.02562 * 15 13 3 17 17 C 1.76200 * 100.00165 * 180.02562 * 16 15 13 18 18 N 1.32470 * 119.60247 * 0.27545 * 17 16 15 19 19 C 1.32307 * 121.84138 * 180.29173 * 18 17 16 20 20 N 1.38025 * 119.59370 * 179.70710 * 19 18 17 21 21 C 1.40913 * 120.81461 * 359.42792 * 19 18 17 22 22 C 1.43192 * 120.43904 * 180.29646 * 21 19 18 23 23 N 9.44222 * 85.87122 * 101.79886 * 2 1 3 24 24 C 1.39694 * 119.12243 * 0.27993 * 21 19 18 25 25 C 1.39691 * 118.31847 * 359.97438 * 24 21 19 26 26 C 1.43204 * 120.44277 * 179.97438 * 25 24 21 27 27 N 8.26679 * 100.39569 * 58.72427 * 2 1 3 28 28 H 1.08997 * 109.47187 * 299.99758 * 1 2 3 29 29 H 1.09000 * 109.47396 * 59.99845 * 1 2 3 30 30 H 1.08998 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47187 * 240.00241 * 2 1 3 32 32 H 1.08996 * 109.46957 * 119.99989 * 2 1 3 33 33 H 1.09000 * 109.47274 * 29.99475 * 4 3 2 34 34 H 1.08998 * 109.47392 * 150.00574 * 4 3 2 35 35 H 0.96998 * 120.00094 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46878 * 60.00518 * 15 13 3 37 37 H 1.08996 * 109.47276 * 300.00129 * 15 13 3 38 38 H 0.96996 * 120.00314 * 179.72702 * 20 19 18 39 39 H 0.97009 * 120.00077 * 359.45130 * 20 19 18 40 40 H 1.07998 * 120.83968 * 180.02562 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9131 2.0957 -3.4175 10 1 6.6005 1.2397 -2.4175 11 1 5.9201 1.4166 -4.7381 12 1 6.6209 3.3967 -3.5261 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9914 1.3062 2.4723 16 16 2.3829 2.4153 3.8481 17 6 2.0098 1.3592 5.2083 18 7 1.5805 0.1267 4.9812 19 6 1.2821 -0.7015 5.9689 20 7 0.8327 -1.9740 5.6792 21 6 1.4229 -0.3026 7.3130 22 6 1.1036 -1.2077 8.3757 23 7 0.8502 -1.9257 9.2187 24 6 1.8784 0.9876 7.5951 25 6 2.1777 1.8335 6.5245 26 6 2.6474 3.1654 6.7615 27 7 3.0217 4.2213 6.9495 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1383 35 1 3.6751 3.5164 -4.4439 36 1 2.6213 0.4185 2.5301 37 1 0.9433 1.0124 2.5299 38 1 0.6161 -2.5874 6.3986 39 1 0.7298 -2.2536 4.7559 40 1 1.9969 1.3222 8.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077222569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:17 Heat of formation + Delta-G solvation = 64.372823 kcal Electronic energy + Delta-G solvation = -25983.003098 eV Core-core repulsion = 22117.638645 eV Total energy + Delta-G solvation = -3865.364453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94966 -39.19785 -37.28985 -36.80236 -35.49558 -35.30451 -33.34730 -32.91000 -30.60421 -30.36601 -29.97946 -26.80692 -25.61620 -24.27308 -23.14677 -22.71576 -20.94694 -19.31237 -18.71145 -18.18930 -17.56863 -16.75514 -16.41995 -16.09713 -16.01500 -15.67858 -15.35188 -14.97896 -14.41081 -14.13648 -13.99246 -13.83763 -13.64255 -13.55478 -13.50241 -13.34636 -13.27931 -13.07960 -12.80940 -12.55620 -12.16521 -12.08927 -11.76175 -11.58250 -11.29782 -10.96791 -10.85782 -10.80746 -10.58366 -10.56349 -10.32061 -10.18774 -9.70084 -9.22476 -8.91874 -8.49294 -7.92135 -7.79400 -6.10321 -4.15334 -0.02162 0.41831 1.03056 1.77596 2.11912 2.23417 2.48438 2.75095 2.91136 3.14097 3.26672 3.35095 3.35227 3.38407 3.44837 3.67570 3.75194 3.94986 4.31029 4.39776 4.59537 4.78521 5.02615 5.04293 5.16657 5.18358 5.24806 5.40005 5.46552 5.51951 5.66318 5.92161 6.12786 6.31571 6.38377 6.57043 6.91087 6.97835 7.27198 7.33560 7.37109 7.40344 7.85131 8.14891 8.20842 8.73769 8.91830 9.50064 10.97885 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002622 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.598758 B =10676.274022 C =11664.541837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.587 5.587 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.518 3.482 14 O -0.527 6.527 15 C -0.148 4.148 16 S 0.074 5.926 17 C 0.222 3.778 18 N -0.547 5.547 19 C 0.494 3.506 20 N -0.824 5.824 21 C -0.174 4.174 22 C 0.263 3.737 23 N -0.419 5.419 24 C 0.085 3.915 25 C -0.128 4.128 26 C 0.257 3.743 27 N -0.398 5.398 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.413 0.587 39 H 0.416 0.584 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 -12.234 18.844 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.302 3.698 14 O -0.404 6.404 15 C -0.300 4.300 16 S 0.320 5.680 17 C -0.034 4.034 18 N -0.270 5.270 19 C 0.245 3.755 20 N -0.364 5.364 21 C -0.189 4.189 22 C -0.052 4.052 23 N -0.095 5.095 24 C 0.054 3.946 25 C -0.144 4.144 26 C -0.059 4.059 27 N -0.074 5.074 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.244 0.756 39 H 0.247 0.753 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.248 -10.087 19.159 22.834 hybrid contribution 0.351 -1.899 -0.115 1.935 sum -6.898 -11.986 19.045 23.536 Atomic orbital electron populations 1.22218 0.96558 1.01563 1.02426 1.21491 0.93673 0.83902 1.02975 1.48187 1.63076 1.13374 1.07242 1.19355 0.96535 0.93718 0.77649 1.21437 0.96789 1.32096 1.06340 0.92334 1.24934 0.97908 0.94849 0.96374 1.69934 1.35638 1.33312 1.14340 0.86443 0.84538 0.78134 0.78312 1.19759 1.20965 1.20818 1.19431 0.79392 0.86778 0.84222 1.90743 1.45672 1.17563 1.86461 1.24020 1.08005 1.02851 0.95119 1.87077 1.76321 1.12890 0.91703 1.23934 0.89611 0.92930 0.96881 1.67848 1.23545 1.03248 1.32402 1.18191 0.84268 0.85885 0.87120 1.42291 1.70212 1.10995 1.12884 1.15850 1.20572 0.94435 0.88065 1.25137 0.93344 0.93459 0.93220 1.81338 1.10396 1.09114 1.08655 1.21271 0.85335 0.88860 0.99137 1.15825 1.16175 0.89980 0.92428 1.24934 0.93887 0.92151 0.94904 1.81290 1.09126 1.10873 1.06089 0.93037 0.91918 0.92022 0.89641 0.91516 0.94684 0.93684 0.92690 0.85904 0.86005 0.75574 0.75275 0.82515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.10 1.44 5.93 -4.04 -0.02 1.41 16 3 N -0.59 -11.27 2.46 -175.06 -0.43 -11.70 16 4 C 0.25 6.07 5.16 -5.19 -0.03 6.04 16 5 C -0.53 -14.33 9.39 -34.44 -0.32 -14.66 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 9 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.52 9.77 7.69 -10.98 -0.08 9.69 16 14 O -0.53 -12.42 15.44 5.56 0.09 -12.34 16 15 C -0.15 -1.92 3.86 36.01 0.14 -1.78 16 16 S 0.07 0.98 20.16 -107.50 -2.17 -1.19 16 17 C 0.22 2.15 7.02 -16.27 -0.11 2.03 16 18 N -0.55 -4.49 9.11 -10.62 -0.10 -4.59 16 19 C 0.49 3.14 7.75 -155.37 -1.20 1.93 16 20 N -0.82 -3.12 8.96 31.28 0.28 -2.84 16 21 C -0.17 -1.05 5.77 -106.42 -0.61 -1.66 16 22 C 0.26 1.83 14.08 -22.48 -0.32 1.51 16 23 N -0.42 -3.80 18.54 41.84 0.78 -3.02 16 24 C 0.08 0.49 9.61 -38.50 -0.37 0.12 16 25 C -0.13 -1.09 5.77 -106.42 -0.61 -1.70 16 26 C 0.26 2.80 14.28 -22.47 -0.32 2.48 16 27 N -0.40 -5.34 18.54 41.84 0.78 -4.56 16 28 H 0.05 0.55 7.22 -51.93 -0.37 0.17 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.25 8.07 -51.93 -0.42 0.84 16 32 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 33 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.12 1.38 7.38 -51.91 -0.38 1.00 16 37 H 0.12 1.30 7.17 -51.92 -0.37 0.93 16 38 H 0.41 1.16 7.63 -40.82 -0.31 0.85 16 39 H 0.42 1.07 8.95 -40.82 -0.37 0.70 16 40 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -34.38 378.15 -7.13 -41.51 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -4.18 Total: -3.65 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.59 Total: 5.49 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 2.04 Total: -51.84 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.17 Total: -1.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.38 -7.13 -41.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077222569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.885 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds