Wall clock time and date at job start Wed Apr 1 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46996 * 2 1 4 4 C 1.46498 * 120.00241 * 270.00163 * 3 2 1 5 5 C 1.50708 * 109.46766 * 269.99962 * 4 3 2 6 6 H 1.07991 * 119.99975 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99492 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00247 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99749 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47071 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47319 * 120.00073 * 9 7 5 12 12 H 1.48501 * 109.47038 * 240.00406 * 9 7 5 13 13 C 1.34781 * 119.99805 * 90.00383 * 3 2 1 14 14 O 1.21279 * 119.99797 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99753 * 359.97438 * 13 3 2 16 16 S 1.81005 * 109.46895 * 180.02562 * 15 13 3 17 17 C 1.76200 * 100.00165 * 180.02562 * 16 15 13 18 18 N 1.32470 * 119.60247 * 0.27545 * 17 16 15 19 19 C 1.32307 * 121.84138 * 180.29173 * 18 17 16 20 20 N 1.38025 * 119.59370 * 179.70710 * 19 18 17 21 21 C 1.40913 * 120.81461 * 359.42792 * 19 18 17 22 22 C 1.43192 * 120.43904 * 180.29646 * 21 19 18 23 23 N 9.44222 * 85.87122 * 101.79886 * 2 1 3 24 24 C 1.39694 * 119.12243 * 0.27993 * 21 19 18 25 25 C 1.39691 * 118.31847 * 359.97438 * 24 21 19 26 26 C 1.43204 * 120.44277 * 179.97438 * 25 24 21 27 27 N 8.26679 * 100.39569 * 58.72427 * 2 1 3 28 28 H 1.08997 * 109.47187 * 299.99758 * 1 2 3 29 29 H 1.09000 * 109.47396 * 59.99845 * 1 2 3 30 30 H 1.08998 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47187 * 240.00241 * 2 1 3 32 32 H 1.08996 * 109.46957 * 119.99989 * 2 1 3 33 33 H 1.09000 * 109.47274 * 29.99475 * 4 3 2 34 34 H 1.08998 * 109.47392 * 150.00574 * 4 3 2 35 35 H 0.96998 * 120.00094 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46878 * 60.00518 * 15 13 3 37 37 H 1.08996 * 109.47276 * 300.00129 * 15 13 3 38 38 H 0.96996 * 120.00314 * 179.72702 * 20 19 18 39 39 H 0.97009 * 120.00077 * 359.45130 * 20 19 18 40 40 H 1.07998 * 120.83968 * 180.02562 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9131 2.0957 -3.4175 10 1 6.6005 1.2397 -2.4175 11 1 5.9201 1.4166 -4.7381 12 1 6.6209 3.3967 -3.5261 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9914 1.3062 2.4723 16 16 2.3829 2.4153 3.8481 17 6 2.0098 1.3592 5.2083 18 7 1.5805 0.1267 4.9812 19 6 1.2821 -0.7015 5.9689 20 7 0.8327 -1.9740 5.6792 21 6 1.4229 -0.3026 7.3130 22 6 1.1036 -1.2077 8.3757 23 7 0.8502 -1.9257 9.2187 24 6 1.8784 0.9876 7.5951 25 6 2.1777 1.8335 6.5245 26 6 2.6474 3.1654 6.7615 27 7 3.0217 4.2213 6.9495 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1383 35 1 3.6751 3.5164 -4.4439 36 1 2.6213 0.4185 2.5301 37 1 0.9433 1.0124 2.5299 38 1 0.6161 -2.5874 6.3986 39 1 0.7298 -2.2536 4.7559 40 1 1.9969 1.3222 8.6151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077222569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:16 Heat of formation + Delta-G solvation = 41.467419 kcal Electronic energy + Delta-G solvation = -25983.996351 eV Core-core repulsion = 22117.638645 eV Total energy + Delta-G solvation = -3866.357706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55924 -40.71325 -38.01374 -37.52788 -37.01870 -35.87825 -34.93254 -33.95931 -31.86461 -31.21295 -31.11685 -28.59962 -26.30129 -25.00564 -24.71968 -24.05934 -21.62179 -20.42347 -19.43917 -19.06730 -18.60955 -18.22418 -18.00061 -17.27774 -16.63730 -16.62276 -16.47305 -16.13926 -15.90052 -14.97189 -14.81151 -14.76067 -14.68168 -14.52390 -14.47217 -14.24593 -14.13455 -14.04480 -13.91657 -13.71540 -13.48790 -13.30801 -13.22358 -13.00906 -12.67459 -12.50415 -12.22901 -12.14268 -11.87869 -11.69457 -11.65368 -11.17685 -10.99171 -10.76467 -10.63624 -9.56177 -9.45605 -8.73350 -8.21605 -6.35607 -0.65659 -0.14391 0.12549 0.86940 1.37454 1.40400 1.51367 1.53736 1.60010 1.67438 1.70630 2.21849 2.24149 2.29893 2.44316 2.73073 2.79680 3.00347 3.08844 3.38461 3.56027 3.67579 4.05982 4.08773 4.15663 4.39603 4.48161 4.50414 4.58494 4.69027 4.95054 4.96247 5.03048 5.09456 5.24295 5.45292 5.58625 5.83691 5.85881 6.06713 6.15264 6.43036 6.50835 6.65972 6.76084 6.87759 7.25379 7.40291 8.85717 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002622 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.598758 B =10676.274022 C =11664.541837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.593 5.593 4 C 0.262 3.738 5 C -0.539 4.539 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.285 1.285 13 C 0.508 3.492 14 O -0.585 6.585 15 C -0.120 4.120 16 S 0.004 5.996 17 C 0.235 3.765 18 N -0.549 5.549 19 C 0.498 3.502 20 N -0.806 5.806 21 C -0.162 4.162 22 C 0.288 3.712 23 N -0.450 5.450 24 C 0.107 3.893 25 C -0.136 4.136 26 C 0.280 3.720 27 N -0.452 5.452 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.026 0.974 34 H -0.003 1.003 35 H 0.266 0.734 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.421 0.579 39 H 0.425 0.575 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 -15.768 20.795 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.324 5.324 4 C 0.141 3.859 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.195 1.195 12 H -0.211 1.211 13 C 0.295 3.705 14 O -0.467 6.467 15 C -0.271 4.271 16 S 0.248 5.752 17 C -0.021 4.021 18 N -0.273 5.273 19 C 0.247 3.753 20 N -0.346 5.346 21 C -0.177 4.177 22 C -0.027 4.027 23 N -0.127 5.127 24 C 0.077 3.923 25 C -0.152 4.152 26 C -0.035 4.035 27 N -0.128 5.128 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.044 0.956 34 H 0.015 0.985 35 H 0.075 0.925 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.253 0.747 39 H 0.258 0.742 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.651 -13.734 21.135 26.341 hybrid contribution 0.364 -0.945 -0.634 1.194 sum -7.287 -14.678 20.502 26.246 Atomic orbital electron populations 1.22160 0.94386 1.03714 1.01699 1.21856 0.95436 0.80842 1.04410 1.48179 1.63222 1.15317 1.05690 1.18753 0.95406 0.91602 0.80176 1.21732 0.97848 1.31810 1.06365 0.92603 1.25836 1.02197 0.94576 0.96576 1.70053 1.37645 1.34301 1.14852 0.85406 0.79260 0.77925 0.78459 1.18890 1.19499 1.21114 1.20371 0.77910 0.86333 0.85885 1.90713 1.48014 1.20344 1.87590 1.23755 1.10097 1.02052 0.91156 1.87411 1.78384 1.15333 0.94035 1.23372 0.90332 0.93081 0.95342 1.67765 1.23838 1.02715 1.32935 1.18260 0.83815 0.86341 0.86838 1.42337 1.68412 1.09938 1.13919 1.15782 1.20009 0.94198 0.87730 1.24989 0.92379 0.92728 0.92592 1.81394 1.11462 1.10174 1.09623 1.21497 0.83110 0.87985 0.99711 1.15781 1.17521 0.89287 0.92621 1.25257 0.92577 0.92286 0.93404 1.81304 1.11202 1.12485 1.07844 0.91952 0.94517 0.88312 0.90750 0.87491 0.95580 0.98464 0.92479 0.83536 0.83136 0.74677 0.74163 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 71.98 0.74 -2.55 16 2 C 0.10 2.50 5.93 86.38 0.51 3.01 16 3 N -0.59 -23.08 2.46 -826.15 -2.03 -25.11 16 4 C 0.26 13.58 5.16 85.64 0.44 14.02 16 5 C -0.54 -30.13 9.39 25.60 0.24 -29.89 16 6 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 9 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.51 19.47 7.69 87.66 0.67 20.15 16 14 O -0.59 -29.13 15.44 -3.03 -0.05 -29.17 16 15 C -0.12 -2.91 3.86 71.24 0.28 -2.63 16 16 S 0.00 0.10 20.16 -56.49 -1.14 -1.04 16 17 C 0.23 4.04 7.02 85.25 0.60 4.64 16 18 N -0.55 -7.05 9.11 -187.51 -1.71 -8.76 16 19 C 0.50 4.26 7.75 133.86 1.04 5.30 16 20 N -0.81 -2.55 8.96 -54.95 -0.49 -3.05 16 21 C -0.16 -1.31 5.77 -21.03 -0.12 -1.43 16 22 C 0.29 2.93 14.08 88.33 1.24 4.17 16 23 N -0.45 -6.82 18.54 19.00 0.35 -6.47 16 24 C 0.11 0.86 9.61 22.97 0.22 1.08 16 25 C -0.14 -2.01 5.77 -21.03 -0.12 -2.13 16 26 C 0.28 5.93 14.28 88.33 1.26 7.19 16 27 N -0.45 -12.32 18.54 19.00 0.35 -11.97 16 28 H 0.06 1.14 7.22 -2.39 -0.02 1.12 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 32 H 0.11 1.90 6.44 -2.39 -0.02 1.89 16 33 H 0.03 1.37 8.07 -2.39 -0.02 1.36 16 34 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.16 16 36 H 0.15 2.83 7.38 -2.39 -0.02 2.81 16 37 H 0.15 2.73 7.17 -2.40 -0.02 2.72 16 38 H 0.42 0.58 7.63 -92.71 -0.71 -0.13 16 39 H 0.43 0.18 8.95 -92.70 -0.83 -0.65 16 40 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -80.92 378.15 4.67 -76.26 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: -0.40 Total: -3.57 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 7.46 Total: 21.79 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -3.24 Total: -110.57 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.05 Total: -29.17 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.14 Total: -1.04 kcal Total: -80.92 4.67 -76.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077222569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.725 kcal (2) G-P(sol) polarization free energy of solvation -80.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds