Wall clock time and date at job start Wed Apr 1 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47284 * 2 1 4 4 C 1.46493 * 120.00050 * 274.46805 * 3 2 1 5 5 C 1.50699 * 109.47256 * 264.85308 * 4 3 2 6 6 H 1.08003 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00123 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00198 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00215 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47176 * 119.99516 * 9 7 5 12 12 H 1.48501 * 109.47471 * 239.99814 * 9 7 5 13 13 C 1.34779 * 119.99894 * 94.46657 * 3 2 1 14 14 O 1.21355 * 120.00056 * 354.64693 * 13 3 2 15 15 C 1.49358 * 119.99782 * 174.64358 * 13 3 2 16 16 O 1.21379 * 120.00058 * 354.43274 * 15 13 3 17 17 N 1.34779 * 119.99771 * 174.43799 * 15 13 3 18 18 C 1.39752 * 119.99763 * 185.01762 * 17 15 13 19 19 C 1.39335 * 120.49386 * 35.09269 * 18 17 15 20 20 C 1.38489 * 118.35743 * 179.72662 * 19 18 17 21 21 C 1.38285 * 119.24145 * 0.24926 * 20 19 18 22 22 C 1.50701 * 119.53810 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46854 * 90.00124 * 22 21 20 24 24 F 1.39892 * 109.47298 * 209.99967 * 22 21 20 25 25 F 1.39904 * 109.46705 * 330.00463 * 22 21 20 26 26 N 1.31862 * 120.92914 * 0.02562 * 21 20 19 27 27 C 1.31811 * 121.80301 * 0.02562 * 26 21 20 28 28 H 1.09004 * 109.47383 * 299.99956 * 1 2 3 29 29 H 1.09000 * 109.47416 * 59.99914 * 1 2 3 30 30 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47349 * 239.99287 * 2 1 3 32 32 H 1.09012 * 109.47084 * 120.00296 * 2 1 3 33 33 H 1.09000 * 109.47405 * 24.85146 * 4 3 2 34 34 H 1.09000 * 109.47306 * 144.84979 * 4 3 2 35 35 H 0.96999 * 120.00326 * 179.97438 * 8 7 5 36 36 H 0.96993 * 120.00170 * 5.01137 * 17 15 13 37 37 H 1.08003 * 120.82388 * 0.02562 * 19 18 17 38 38 H 1.07999 * 120.38297 * 180.23467 * 20 19 18 39 39 H 1.08000 * 119.67068 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1693 2.1047 -1.2648 5 6 3.5926 1.9849 -1.7452 6 1 4.3129 1.4261 -1.1661 7 6 3.9757 2.5896 -2.9236 8 7 3.0988 3.2705 -3.6286 9 14 5.7402 2.4418 -3.5188 10 1 6.5223 1.6300 -2.5520 11 1 5.7602 1.7827 -4.8494 12 1 6.3409 3.7955 -3.6279 13 6 2.3286 1.9862 1.1637 14 8 2.1125 1.4232 2.2168 15 6 2.9386 3.3495 1.1571 16 8 3.2480 3.8709 0.1055 17 7 3.1456 4.0008 2.3188 18 6 3.6181 5.3159 2.3079 19 6 3.2253 6.2001 1.3053 20 6 3.7159 7.4947 1.3406 21 6 4.5765 7.8634 2.3583 22 6 5.1148 9.2703 2.4029 23 9 4.2518 10.0762 3.1532 24 9 6.3820 9.2662 2.9955 25 9 5.2101 9.7746 1.1014 26 7 4.9336 7.0010 3.2897 27 6 4.4912 5.7594 3.2931 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.4974 1.6784 -2.0097 34 1 1.9241 3.1559 -1.1136 35 1 3.3684 3.6963 -4.4575 36 1 2.9665 3.5567 3.1623 37 1 2.5510 5.8851 0.5226 38 1 3.4298 8.2082 0.5820 39 1 4.8058 5.0819 4.0731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123835927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:11 Heat of formation + Delta-G solvation = -162.442845 kcal Electronic energy + Delta-G solvation = -30281.248951 eV Core-core repulsion = 25389.146669 eV Total energy + Delta-G solvation = -4892.102281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.23189 -47.77453 -47.67827 -41.13445 -39.95458 -38.18095 -36.04707 -34.86013 -32.76163 -32.54623 -31.13762 -30.62292 -27.28367 -26.72890 -24.83913 -24.03003 -23.19739 -22.87375 -21.41590 -19.66272 -18.81281 -18.61091 -18.51162 -17.83519 -17.11969 -16.73105 -16.32263 -16.04855 -15.41465 -15.19501 -14.92146 -14.69483 -14.51007 -14.41267 -14.23828 -14.13567 -13.93801 -13.84981 -13.84521 -13.69580 -13.44973 -13.15953 -13.08240 -12.47556 -12.16308 -12.10040 -11.79371 -11.72675 -11.15833 -11.02747 -10.92003 -10.73760 -10.58180 -10.09318 -10.05724 -9.92045 -9.78466 -8.93045 -8.61790 -8.43503 -8.02513 -6.13364 -4.15392 0.47264 0.98789 1.88250 2.34084 2.58661 3.24179 3.25856 3.32930 3.35594 3.44619 3.66812 3.80512 3.86454 4.30981 4.36202 4.44152 4.57720 4.69195 4.82928 4.94862 5.23892 5.31404 5.41506 5.57557 5.57835 5.69452 5.85047 5.96590 6.05440 6.17445 6.44752 6.46614 6.54083 7.03864 7.18574 7.29173 7.42295 7.75127 7.90220 8.03624 8.09278 8.44897 8.83982 9.47986 10.95536 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.003430 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.491857 B = 8160.915938 C = 9833.628445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.556 5.556 4 C 0.231 3.769 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.558 6.558 15 C 0.486 3.514 16 O -0.419 6.419 17 N -0.660 5.660 18 C 0.148 3.852 19 C -0.079 4.079 20 C -0.094 4.094 21 C 0.003 3.997 22 C 0.527 3.473 23 F -0.174 7.174 24 F -0.167 7.167 25 F -0.172 7.172 26 N -0.424 5.424 27 C 0.079 3.921 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.262 0.738 36 H 0.423 0.577 37 H 0.161 0.839 38 H 0.152 0.848 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 5.590 11.406 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.286 5.286 4 C 0.112 3.888 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.439 6.439 15 C 0.268 3.732 16 O -0.285 6.285 17 N -0.309 5.309 18 C 0.049 3.951 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.136 4.136 22 C 0.472 3.528 23 F -0.155 7.155 24 F -0.148 7.148 25 F -0.153 7.153 26 N -0.132 5.132 27 C -0.083 4.083 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.261 0.739 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.473 6.001 11.530 13.081 hybrid contribution 0.537 -0.304 -0.800 1.010 sum -0.936 5.697 10.729 12.184 Atomic orbital electron populations 1.22104 0.96079 1.01746 1.02292 1.21464 0.94053 0.82482 1.03208 1.48314 1.58594 1.13590 1.08114 1.19890 0.97879 0.93003 0.78017 1.21201 0.94737 1.32865 1.06428 0.92699 1.24781 0.97268 0.94738 0.96405 1.69906 1.33959 1.33873 1.15209 0.86537 0.84968 0.77935 0.78526 1.19932 1.20962 1.20904 1.19574 0.80451 0.86236 0.84736 1.90669 1.55883 1.66441 1.30951 1.20652 0.80997 0.87934 0.83647 1.91065 1.42340 1.66300 1.28757 1.43331 1.65446 1.11188 1.10955 1.18959 0.94034 0.85154 0.96916 1.21723 0.99009 0.91088 0.98886 1.21749 0.95176 0.97271 0.97279 1.20763 1.02278 0.93980 0.96597 1.17791 0.75930 0.85351 0.73710 1.93222 1.70075 1.75531 1.76715 1.93218 1.40866 1.96802 1.83905 1.93217 1.96020 1.88679 1.37389 1.67079 1.20937 1.02408 1.22785 1.22592 0.94032 0.92181 0.99520 0.92675 0.92173 0.91912 0.89735 0.90457 0.94641 0.92388 0.92801 0.73903 0.82145 0.83045 0.81095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 10.24 37.15 0.38 -1.88 16 2 C 0.11 1.80 6.11 -4.05 -0.02 1.78 16 3 N -0.56 -10.85 2.47 -175.61 -0.43 -11.29 16 4 C 0.23 5.31 4.77 -5.20 -0.02 5.29 16 5 C -0.51 -13.25 7.73 -34.44 -0.27 -13.52 16 6 H 0.05 1.45 7.81 -52.48 -0.41 1.04 16 7 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 8 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.51 9.54 7.68 -11.63 -0.09 9.45 16 14 O -0.56 -10.40 16.05 5.49 0.09 -10.32 16 15 C 0.49 8.69 7.44 -11.63 -0.09 8.60 16 16 O -0.42 -8.89 10.00 5.47 0.05 -8.84 16 17 N -0.66 -9.03 5.33 -10.20 -0.05 -9.09 16 18 C 0.15 1.98 6.26 -83.59 -0.52 1.46 16 19 C -0.08 -1.11 8.76 -39.08 -0.34 -1.45 16 20 C -0.09 -1.19 9.42 -39.47 -0.37 -1.56 16 21 C 0.00 0.04 6.30 -82.56 -0.52 -0.48 16 22 C 0.53 6.62 3.43 36.01 0.12 6.74 16 23 F -0.17 -2.12 17.30 2.25 0.04 -2.08 16 24 F -0.17 -2.23 17.03 2.25 0.04 -2.19 16 25 F -0.17 -2.10 16.43 2.25 0.04 -2.06 16 26 N -0.42 -5.75 9.95 -9.30 -0.09 -5.84 16 27 C 0.08 0.95 11.13 -17.31 -0.19 0.76 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 32 H 0.08 1.22 7.37 -51.92 -0.38 0.84 16 33 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 34 H 0.06 1.43 5.93 -51.93 -0.31 1.12 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.42 4.73 8.30 -40.82 -0.34 4.39 16 37 H 0.16 2.42 6.65 -52.48 -0.35 2.07 16 38 H 0.15 1.60 7.59 -52.49 -0.40 1.20 16 39 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -29.89 354.03 -5.16 -35.05 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -3.85 Total: 2.18 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: -2.04 Total: 16.97 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.16 Total: -50.13 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.14 Total: -19.16 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.89 -5.16 -35.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123835927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.392 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds