Wall clock time and date at job start Wed Apr 1 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47284 * 2 1 4 4 C 1.46493 * 120.00050 * 274.46805 * 3 2 1 5 5 C 1.50699 * 109.47256 * 264.85308 * 4 3 2 6 6 H 1.08003 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00123 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00198 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00215 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47176 * 119.99516 * 9 7 5 12 12 H 1.48501 * 109.47471 * 239.99814 * 9 7 5 13 13 C 1.34779 * 119.99894 * 94.46657 * 3 2 1 14 14 O 1.21355 * 120.00056 * 354.64693 * 13 3 2 15 15 C 1.49358 * 119.99782 * 174.64358 * 13 3 2 16 16 O 1.21379 * 120.00058 * 354.43274 * 15 13 3 17 17 N 1.34779 * 119.99771 * 174.43799 * 15 13 3 18 18 C 1.39752 * 119.99763 * 185.01762 * 17 15 13 19 19 C 1.39335 * 120.49386 * 35.09269 * 18 17 15 20 20 C 1.38489 * 118.35743 * 179.72662 * 19 18 17 21 21 C 1.38285 * 119.24145 * 0.24926 * 20 19 18 22 22 C 1.50701 * 119.53810 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46854 * 90.00124 * 22 21 20 24 24 F 1.39892 * 109.47298 * 209.99967 * 22 21 20 25 25 F 1.39904 * 109.46705 * 330.00463 * 22 21 20 26 26 N 1.31862 * 120.92914 * 0.02562 * 21 20 19 27 27 C 1.31811 * 121.80301 * 0.02562 * 26 21 20 28 28 H 1.09004 * 109.47383 * 299.99956 * 1 2 3 29 29 H 1.09000 * 109.47416 * 59.99914 * 1 2 3 30 30 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47349 * 239.99287 * 2 1 3 32 32 H 1.09012 * 109.47084 * 120.00296 * 2 1 3 33 33 H 1.09000 * 109.47405 * 24.85146 * 4 3 2 34 34 H 1.09000 * 109.47306 * 144.84979 * 4 3 2 35 35 H 0.96999 * 120.00326 * 179.97438 * 8 7 5 36 36 H 0.96993 * 120.00170 * 5.01137 * 17 15 13 37 37 H 1.08003 * 120.82388 * 0.02562 * 19 18 17 38 38 H 1.07999 * 120.38297 * 180.23467 * 20 19 18 39 39 H 1.08000 * 119.67068 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1693 2.1047 -1.2648 5 6 3.5926 1.9849 -1.7452 6 1 4.3129 1.4261 -1.1661 7 6 3.9757 2.5896 -2.9236 8 7 3.0988 3.2705 -3.6286 9 14 5.7402 2.4418 -3.5188 10 1 6.5223 1.6300 -2.5520 11 1 5.7602 1.7827 -4.8494 12 1 6.3409 3.7955 -3.6279 13 6 2.3286 1.9862 1.1637 14 8 2.1125 1.4232 2.2168 15 6 2.9386 3.3495 1.1571 16 8 3.2480 3.8709 0.1055 17 7 3.1456 4.0008 2.3188 18 6 3.6181 5.3159 2.3079 19 6 3.2253 6.2001 1.3053 20 6 3.7159 7.4947 1.3406 21 6 4.5765 7.8634 2.3583 22 6 5.1148 9.2703 2.4029 23 9 4.2518 10.0762 3.1532 24 9 6.3820 9.2662 2.9955 25 9 5.2101 9.7746 1.1014 26 7 4.9336 7.0010 3.2897 27 6 4.4912 5.7594 3.2931 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.4974 1.6784 -2.0097 34 1 1.9241 3.1559 -1.1136 35 1 3.3684 3.6963 -4.4575 36 1 2.9665 3.5567 3.1623 37 1 2.5510 5.8851 0.5226 38 1 3.4298 8.2082 0.5820 39 1 4.8058 5.0819 4.0731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123835927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:10 Heat of formation + Delta-G solvation = -180.875865 kcal Electronic energy + Delta-G solvation = -30282.048266 eV Core-core repulsion = 25389.146669 eV Total energy + Delta-G solvation = -4892.901597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.23709 -48.76682 -48.69781 -42.36956 -41.23764 -39.58174 -37.52402 -36.19003 -34.67909 -33.58998 -32.26726 -32.01517 -29.08067 -27.91035 -26.09562 -25.08996 -25.00779 -24.05133 -22.66895 -20.97935 -19.84048 -19.61388 -19.60874 -19.12933 -18.59849 -18.47933 -17.56353 -17.43500 -16.82165 -16.64663 -16.21028 -16.04987 -15.69272 -15.52893 -15.39779 -15.27539 -15.13981 -14.91917 -14.87058 -14.85291 -14.66501 -14.48327 -14.30842 -14.19077 -13.64600 -13.42720 -13.15041 -13.11116 -12.76767 -12.70613 -12.44496 -12.22101 -12.07857 -11.79312 -11.66704 -11.13575 -11.00103 -10.61164 -10.26176 -9.76353 -9.60983 -8.15219 -6.21976 -0.61690 -0.04997 0.46463 1.19223 1.36508 1.40313 1.42899 1.48505 2.06814 2.35508 2.37122 2.43522 2.56060 2.81458 3.19691 3.27852 3.30872 3.50047 3.57788 3.75346 3.82356 4.16323 4.35896 4.38446 4.50589 4.52802 4.76531 4.79593 4.86549 4.95356 5.02933 5.23621 5.31837 5.40417 5.52824 5.75530 5.94707 6.10418 6.29330 6.39668 6.67239 6.81005 7.00862 7.43994 8.92993 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.003430 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.491857 B = 8160.915938 C = 9833.628445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.564 5.564 4 C 0.250 3.750 5 C -0.512 4.512 6 H 0.044 0.956 7 C 0.026 3.974 8 N -0.920 5.920 9 Si 0.944 3.056 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.287 1.287 13 C 0.506 3.494 14 O -0.554 6.554 15 C 0.490 3.510 16 O -0.460 6.460 17 N -0.638 5.638 18 C 0.136 3.864 19 C -0.090 4.090 20 C -0.093 4.093 21 C -0.002 4.002 22 C 0.532 3.468 23 F -0.171 7.171 24 F -0.171 7.171 25 F -0.169 7.169 26 N -0.438 5.438 27 C 0.094 3.906 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.024 0.976 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.436 0.564 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 5.193 12.681 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.295 5.295 4 C 0.130 3.870 5 C -0.551 4.551 6 H 0.063 0.937 7 C -0.173 4.173 8 N -0.560 5.560 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.201 1.201 12 H -0.213 1.213 13 C 0.289 3.711 14 O -0.436 6.436 15 C 0.272 3.728 16 O -0.329 6.329 17 N -0.289 5.289 18 C 0.038 3.962 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.140 4.140 22 C 0.477 3.523 23 F -0.152 7.152 24 F -0.152 7.152 25 F -0.151 7.151 26 N -0.146 5.146 27 C -0.068 4.068 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.277 0.723 37 H 0.163 0.837 38 H 0.186 0.814 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.054 5.595 12.865 14.069 hybrid contribution 0.387 -0.166 -1.084 1.162 sum -0.667 5.429 11.782 12.989 Atomic orbital electron populations 1.22030 0.94058 1.03548 1.01605 1.21696 0.95738 0.80814 1.03525 1.48288 1.59258 1.14706 1.07199 1.19398 0.96121 0.92385 0.79107 1.21370 0.95720 1.31945 1.06077 0.93738 1.25409 1.00250 0.94803 0.96850 1.69991 1.35381 1.34967 1.15657 0.85732 0.81337 0.77534 0.78344 1.19781 1.20073 1.21344 1.19741 0.80244 0.86630 0.84533 1.90661 1.55771 1.66579 1.30559 1.20562 0.80501 0.87606 0.84168 1.91059 1.44484 1.67034 1.30313 1.43052 1.64292 1.11213 1.10316 1.19067 0.94957 0.84664 0.97558 1.21710 0.99259 0.91969 0.98871 1.21885 0.94781 0.97083 0.97578 1.20930 1.02153 0.94324 0.96605 1.17679 0.75720 0.85132 0.73768 1.93229 1.69941 1.75398 1.76657 1.93209 1.41208 1.96812 1.84012 1.93223 1.95998 1.88623 1.37240 1.67164 1.21438 1.02939 1.23060 1.23069 0.92463 0.92007 0.99267 0.93060 0.93067 0.88862 0.89820 0.89685 0.95847 0.94077 0.92817 0.72282 0.83694 0.81352 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 10.24 71.98 0.74 -3.29 16 2 C 0.10 3.28 6.11 86.38 0.53 3.81 16 3 N -0.56 -21.93 2.47 -827.87 -2.04 -23.98 16 4 C 0.25 11.71 4.77 85.63 0.41 12.12 16 5 C -0.51 -26.67 7.73 25.60 0.20 -26.47 16 6 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 7 C 0.03 1.42 5.46 84.65 0.46 1.88 16 8 N -0.92 -51.59 13.29 21.45 0.28 -51.30 16 9 Si 0.94 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 13 C 0.51 18.69 7.68 87.24 0.67 19.36 16 14 O -0.55 -19.81 16.05 -3.26 -0.05 -19.86 16 15 C 0.49 17.39 7.44 87.24 0.65 18.04 16 16 O -0.46 -19.85 10.00 -3.34 -0.03 -19.88 16 17 N -0.64 -16.70 5.33 -304.52 -1.62 -18.33 16 18 C 0.14 3.46 6.26 38.30 0.24 3.70 16 19 C -0.09 -2.50 8.76 22.59 0.20 -2.31 16 20 C -0.09 -2.28 9.42 22.34 0.21 -2.07 16 21 C 0.00 -0.04 6.30 42.57 0.27 0.23 16 22 C 0.53 12.66 3.43 71.24 0.24 12.90 16 23 F -0.17 -3.92 17.30 44.97 0.78 -3.15 16 24 F -0.17 -4.36 17.03 44.97 0.77 -3.59 16 25 F -0.17 -3.93 16.43 44.97 0.74 -3.19 16 26 N -0.44 -11.05 9.95 -183.32 -1.82 -12.88 16 27 C 0.09 2.05 11.13 84.86 0.94 2.99 16 28 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 32 H 0.08 2.55 7.37 -2.38 -0.02 2.53 16 33 H 0.02 1.15 8.03 -2.39 -0.02 1.13 16 34 H 0.04 2.10 5.93 -2.39 -0.01 2.08 16 35 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 36 H 0.44 8.88 8.30 -92.71 -0.77 8.11 16 37 H 0.15 4.53 6.65 -2.91 -0.02 4.51 16 38 H 0.17 3.43 7.59 -2.91 -0.02 3.40 16 39 H 0.21 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -63.23 354.03 5.14 -58.09 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.36 Total: 11.81 kcal Atomic # 6 Polarization: 35.13 SS G_CDS: 5.76 Total: 40.89 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -5.21 Total: -106.48 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.09 Total: -39.74 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 2.28 Total: -9.93 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -63.23 5.14 -58.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123835927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.783 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds