Wall clock time and date at job start Wed Apr 1 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35729 * 116.99884 * 2 1 4 4 C 1.38918 * 119.61529 * 180.02562 * 3 2 1 5 5 C 1.38312 * 119.18097 * 180.02562 * 4 3 2 6 6 C 1.39340 * 118.43028 * 359.97438 * 5 4 3 7 7 N 1.40415 * 120.41814 * 179.97438 * 6 5 4 8 8 C 1.36933 * 127.17338 * 310.11268 * 7 6 5 9 9 N 1.30328 * 107.29493 * 180.25999 * 8 7 6 10 10 N 1.28512 * 110.13678 * 359.77629 * 9 8 7 11 11 C 1.31307 * 109.90802 * 359.97438 * 10 9 8 12 12 S 1.76199 * 126.49838 * 179.97438 * 11 10 9 13 13 C 1.80997 * 100.00003 * 0.02624 * 12 11 10 14 14 C 1.52995 * 109.47156 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.47217 * 304.99768 * 14 13 12 16 16 C 1.47201 * 109.47409 * 64.99759 * 14 13 12 17 17 N 8.65316 * 74.57334 * 338.65224 * 2 1 3 18 18 C 1.53000 * 109.47167 * 184.99953 * 14 13 12 19 19 C 1.50703 * 109.47225 * 174.99919 * 18 14 13 20 20 H 1.08002 * 120.00082 * 0.02562 * 19 18 14 21 21 C 1.37874 * 120.00300 * 179.97438 * 19 18 14 22 22 N 1.31513 * 120.00504 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99808 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47051 * 89.99622 * 23 21 19 25 25 H 1.48493 * 109.47029 * 209.99387 * 23 21 19 26 26 H 1.48495 * 109.47151 * 329.99690 * 23 21 19 27 27 C 1.38617 * 119.15993 * 0.25562 * 6 5 4 28 28 N 1.31932 * 120.74554 * 359.45305 * 27 6 5 29 29 H 1.08996 * 109.46752 * 299.99920 * 1 2 3 30 30 H 1.09002 * 109.47199 * 60.00030 * 1 2 3 31 31 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.08010 * 120.40918 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.78498 * 180.02562 * 5 4 3 34 34 H 1.08001 * 126.35159 * 359.97438 * 8 7 6 35 35 H 1.09009 * 109.47027 * 299.99987 * 13 12 11 36 36 H 1.08999 * 109.47336 * 59.99768 * 13 12 11 37 37 H 1.09001 * 109.46991 * 294.99488 * 18 14 13 38 38 H 1.08999 * 109.47505 * 54.99806 * 18 14 13 39 39 H 0.96998 * 120.00506 * 180.02562 * 22 21 19 40 40 H 1.07999 * 119.61852 * 179.74565 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4329 1.2728 -0.0005 5 6 4.0514 2.5099 0.0000 6 6 3.2521 3.6512 0.0005 7 7 3.8361 4.9282 0.0016 8 6 4.8193 5.3876 0.8368 9 7 5.0655 6.6230 0.5024 10 7 4.3161 6.9730 -0.4811 11 6 3.5433 5.9714 -0.8329 12 16 2.3495 5.9737 -2.1288 13 6 2.5485 7.6669 -2.7365 14 6 1.5838 7.9082 -3.8992 15 1 1.7420 7.1498 -4.6660 16 6 0.1974 7.8302 -3.4107 17 7 -0.8728 7.7691 -3.0365 18 6 1.8380 9.2950 -4.4934 19 6 0.9741 9.4847 -5.7136 20 1 0.3098 8.6953 -6.0330 21 6 1.0308 10.6665 -6.4215 22 7 0.2773 10.8319 -7.4866 23 14 2.1792 12.0322 -5.8686 24 1 3.5005 11.8640 -6.5252 25 1 1.6024 13.3473 -6.2467 26 1 2.3476 11.9709 -4.3945 27 6 1.8732 3.5101 0.0059 28 7 1.3176 2.3134 -0.0004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0216 0.3672 -0.0014 33 1 5.1285 2.5894 -0.0008 34 1 5.2981 4.8311 1.6288 35 1 2.3306 8.3696 -1.9322 36 1 3.5734 7.8122 -3.0781 37 1 1.5942 10.0575 -3.7536 38 1 2.8875 9.3833 -4.7740 39 1 0.3175 11.6632 -7.9848 40 1 1.2466 4.3897 0.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171423686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:56 Heat of formation + Delta-G solvation = 112.161265 kcal Electronic energy + Delta-G solvation = -25835.547556 eV Core-core repulsion = 21972.255365 eV Total energy + Delta-G solvation = -3863.292191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.32365 -41.21643 -38.64943 -36.97167 -35.36552 -34.12578 -33.06387 -32.32566 -31.03072 -30.28380 -28.43585 -27.75840 -24.92509 -24.52675 -24.01958 -22.59807 -22.20047 -21.59861 -19.33708 -18.98213 -17.88766 -17.24078 -17.04455 -16.61554 -16.56537 -16.13911 -15.72029 -15.23795 -14.95704 -14.74651 -14.32919 -14.20626 -14.04883 -13.85280 -13.56648 -13.16365 -12.91478 -12.53892 -12.39593 -12.23193 -12.05018 -11.97021 -11.68241 -11.41292 -11.30561 -11.26857 -11.01011 -10.66408 -10.50952 -10.48147 -10.39447 -10.21708 -9.96602 -9.87539 -9.40644 -9.01901 -8.65370 -7.85557 -6.14680 -4.16754 0.19272 0.45338 0.82941 1.38771 1.90770 2.12907 2.51062 2.53378 2.98866 3.25627 3.34883 3.36642 3.39746 3.47949 3.64080 3.99297 4.16509 4.19890 4.35849 4.37989 4.46506 4.78218 4.80477 4.88551 4.91169 4.99287 5.06818 5.09044 5.19842 5.19982 5.27279 5.34151 5.57139 5.61906 5.70909 6.00057 6.08684 6.37786 6.60385 6.84851 7.01915 7.11703 7.55453 8.21698 8.29963 8.35364 8.87093 9.44364 10.97999 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.002598 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.435731 B =10775.655682 C =12248.464374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.302 6.302 3 C 0.333 3.667 4 C -0.173 4.173 5 C -0.027 4.027 6 C 0.021 3.979 7 N -0.415 5.415 8 C 0.162 3.838 9 N -0.279 5.279 10 N -0.283 5.283 11 C 0.170 3.830 12 S -0.001 6.001 13 C -0.096 4.096 14 C 0.033 3.967 15 H 0.118 0.882 16 C 0.230 3.770 17 N -0.446 5.446 18 C 0.001 3.999 19 C -0.532 4.532 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.875 3.125 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.262 1.262 27 C 0.170 3.830 28 N -0.518 5.518 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.224 0.776 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.030 0.970 38 H 0.040 0.960 39 H 0.266 0.734 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.219 -22.538 17.938 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.208 6.208 3 C 0.153 3.847 4 C -0.194 4.194 5 C -0.053 4.053 6 C -0.074 4.074 7 N -0.107 5.107 8 C -0.127 4.127 9 N -0.116 5.116 10 N -0.126 5.126 11 C -0.203 4.203 12 S 0.230 5.770 13 C -0.246 4.246 14 C 0.009 3.991 15 H 0.136 0.864 16 C -0.087 4.087 17 N -0.123 5.123 18 C -0.039 4.039 19 C -0.569 4.569 20 H 0.094 0.906 21 C -0.129 4.129 22 N -0.532 5.532 23 Si 0.702 3.298 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.186 1.186 27 C 0.011 3.989 28 N -0.241 5.241 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.240 0.760 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.660 -22.320 18.015 29.446 hybrid contribution 1.902 0.697 0.478 2.081 sum 8.562 -21.623 18.492 29.712 Atomic orbital electron populations 1.22995 0.76324 1.03517 1.03078 1.86273 1.23659 1.23844 1.87025 1.20036 0.89519 0.84971 0.90152 1.21001 0.91988 0.99052 1.07383 1.21340 1.00913 0.89716 0.93356 1.18453 0.93556 0.83090 1.12296 1.43837 1.30874 1.09707 1.26305 1.26832 0.92968 0.94098 0.98808 1.74000 1.19094 1.09599 1.08916 1.74798 1.06274 1.21629 1.09928 1.27240 1.05075 0.87367 1.00636 1.85916 1.40273 1.20557 1.30296 1.23940 1.05281 0.93362 1.01972 1.18775 0.81361 1.04504 0.94447 0.86401 1.28792 0.94880 0.92406 0.92658 1.81019 1.11772 1.09553 1.09911 1.19689 0.98685 0.88450 0.97089 1.20958 1.24147 1.02735 1.09109 0.90650 1.24957 0.95293 0.98175 0.94467 1.69893 1.39304 1.26393 1.17631 0.86845 0.81282 0.81711 0.79970 1.19875 1.21235 1.18635 1.22503 0.90657 0.94852 0.90878 1.67501 1.39774 0.97982 1.18846 0.91901 0.91654 0.88149 0.82672 0.82915 0.76009 0.87622 0.86300 0.95129 0.94220 0.92442 0.81221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.38 101.05 1.05 1.26 16 2 O -0.30 -2.41 10.48 -18.89 -0.20 -2.61 16 3 C 0.33 2.82 7.49 -17.13 -0.13 2.69 16 4 C -0.17 -1.08 10.04 -39.30 -0.39 -1.47 16 5 C -0.03 -0.17 9.87 -39.14 -0.39 -0.55 16 6 C 0.02 0.18 5.94 -83.37 -0.50 -0.32 16 7 N -0.42 -4.33 2.93 -61.74 -0.18 -4.51 16 8 C 0.16 1.56 12.55 -88.76 -1.11 0.44 16 9 N -0.28 -3.80 12.17 29.94 0.36 -3.44 16 10 N -0.28 -4.24 11.60 30.73 0.36 -3.89 16 11 C 0.17 2.22 7.92 -88.11 -0.70 1.52 16 12 S 0.00 -0.01 20.33 -107.50 -2.19 -2.20 16 13 C -0.10 -1.34 4.65 37.15 0.17 -1.17 16 14 C 0.03 0.56 2.21 -93.41 -0.21 0.35 16 15 H 0.12 1.85 8.14 -51.93 -0.42 1.42 16 16 C 0.23 4.48 13.30 -20.78 -0.28 4.21 16 17 N -0.45 -9.51 18.53 42.13 0.78 -8.73 16 18 C 0.00 0.02 3.49 -27.88 -0.10 -0.07 16 19 C -0.53 -13.92 9.15 -34.44 -0.32 -14.24 16 20 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 23 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 27 C 0.17 1.64 10.16 -17.37 -0.18 1.46 16 28 N -0.52 -5.07 9.20 -13.19 -0.12 -5.19 16 29 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.22 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.11 1.51 8.14 -51.91 -0.42 1.08 16 36 H 0.12 1.53 8.14 -51.92 -0.42 1.10 16 37 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 38 H 0.04 0.76 7.57 -51.93 -0.39 0.37 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.17 1.70 7.68 -52.49 -0.40 1.30 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -34.18 371.61 -7.19 -41.37 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.55 Total: -2.39 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -3.16 Total: -3.94 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 1.97 Total: -51.56 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: -0.20 Total: -2.61 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.19 Total: -2.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.18 -7.19 -41.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171423686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.536 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds