Wall clock time and date at job start Wed Apr 1 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35729 * 116.99884 * 2 1 4 4 C 1.38918 * 119.61529 * 180.02562 * 3 2 1 5 5 C 1.38312 * 119.18097 * 180.02562 * 4 3 2 6 6 C 1.39340 * 118.43028 * 359.97438 * 5 4 3 7 7 N 1.40415 * 120.41814 * 179.97438 * 6 5 4 8 8 C 1.36933 * 127.17338 * 310.11268 * 7 6 5 9 9 N 1.30328 * 107.29493 * 180.25999 * 8 7 6 10 10 N 1.28512 * 110.13678 * 359.77629 * 9 8 7 11 11 C 1.31307 * 109.90802 * 359.97438 * 10 9 8 12 12 S 1.76199 * 126.49838 * 179.97438 * 11 10 9 13 13 C 1.80997 * 100.00003 * 0.02624 * 12 11 10 14 14 C 1.52995 * 109.47156 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.47217 * 304.99768 * 14 13 12 16 16 C 1.47201 * 109.47409 * 64.99759 * 14 13 12 17 17 N 8.65316 * 74.57334 * 338.65224 * 2 1 3 18 18 C 1.53000 * 109.47167 * 184.99953 * 14 13 12 19 19 C 1.50703 * 109.47225 * 174.99919 * 18 14 13 20 20 H 1.08002 * 120.00082 * 0.02562 * 19 18 14 21 21 C 1.37874 * 120.00300 * 179.97438 * 19 18 14 22 22 N 1.31513 * 120.00504 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99808 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47051 * 89.99622 * 23 21 19 25 25 H 1.48493 * 109.47029 * 209.99387 * 23 21 19 26 26 H 1.48495 * 109.47151 * 329.99690 * 23 21 19 27 27 C 1.38617 * 119.15993 * 0.25562 * 6 5 4 28 28 N 1.31932 * 120.74554 * 359.45305 * 27 6 5 29 29 H 1.08996 * 109.46752 * 299.99920 * 1 2 3 30 30 H 1.09002 * 109.47199 * 60.00030 * 1 2 3 31 31 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.08010 * 120.40918 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.78498 * 180.02562 * 5 4 3 34 34 H 1.08001 * 126.35159 * 359.97438 * 8 7 6 35 35 H 1.09009 * 109.47027 * 299.99987 * 13 12 11 36 36 H 1.08999 * 109.47336 * 59.99768 * 13 12 11 37 37 H 1.09001 * 109.46991 * 294.99488 * 18 14 13 38 38 H 1.08999 * 109.47505 * 54.99806 * 18 14 13 39 39 H 0.96998 * 120.00506 * 180.02562 * 22 21 19 40 40 H 1.07999 * 119.61852 * 179.74565 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4329 1.2728 -0.0005 5 6 4.0514 2.5099 0.0000 6 6 3.2521 3.6512 0.0005 7 7 3.8361 4.9282 0.0016 8 6 4.8193 5.3876 0.8368 9 7 5.0655 6.6230 0.5024 10 7 4.3161 6.9730 -0.4811 11 6 3.5433 5.9714 -0.8329 12 16 2.3495 5.9737 -2.1288 13 6 2.5485 7.6669 -2.7365 14 6 1.5838 7.9082 -3.8992 15 1 1.7420 7.1498 -4.6660 16 6 0.1974 7.8302 -3.4107 17 7 -0.8728 7.7691 -3.0365 18 6 1.8380 9.2950 -4.4934 19 6 0.9741 9.4847 -5.7136 20 1 0.3098 8.6953 -6.0330 21 6 1.0308 10.6665 -6.4215 22 7 0.2773 10.8319 -7.4866 23 14 2.1792 12.0322 -5.8686 24 1 3.5005 11.8640 -6.5252 25 1 1.6024 13.3473 -6.2467 26 1 2.3476 11.9709 -4.3945 27 6 1.8732 3.5101 0.0059 28 7 1.3176 2.3134 -0.0004 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0216 0.3672 -0.0014 33 1 5.1285 2.5894 -0.0008 34 1 5.2981 4.8311 1.6288 35 1 2.3306 8.3696 -1.9322 36 1 3.5734 7.8122 -3.0781 37 1 1.5942 10.0575 -3.7536 38 1 2.8875 9.3833 -4.7740 39 1 0.3175 11.6632 -7.9848 40 1 1.2466 4.3897 0.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171423686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:55 Heat of formation + Delta-G solvation = 90.977420 kcal Electronic energy + Delta-G solvation = -25836.466156 eV Core-core repulsion = 21972.255365 eV Total energy + Delta-G solvation = -3864.210791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.17429 -41.82023 -39.23823 -38.52574 -36.14008 -35.79588 -34.24202 -33.63073 -31.94106 -30.93145 -30.11546 -28.29408 -25.96993 -25.50710 -24.80338 -23.59962 -23.25896 -22.93783 -20.09940 -19.56223 -18.95869 -18.56483 -18.51304 -17.73238 -17.17904 -16.95528 -16.77328 -16.24326 -15.82639 -15.67506 -15.42379 -15.31144 -14.76642 -14.72095 -14.61502 -14.40923 -14.27880 -14.15734 -13.86063 -13.30993 -13.12765 -12.94784 -12.78842 -12.73252 -12.63068 -12.22843 -12.17666 -12.00007 -11.75875 -11.71272 -11.41654 -11.35847 -11.30390 -11.10276 -10.86236 -10.72957 -9.65508 -8.83477 -8.24963 -6.30868 -0.45963 -0.14439 -0.06861 0.58605 0.87754 1.35026 1.44038 1.46850 1.56568 1.64038 1.84432 1.88497 1.99214 2.38188 2.41002 3.00114 3.03596 3.13649 3.39246 3.56380 3.64370 3.70269 3.86247 4.01635 4.07050 4.29349 4.39164 4.39555 4.40595 4.46274 4.48470 4.58068 4.66527 4.74872 4.77883 4.90645 5.05271 5.18496 5.36049 5.61050 5.69287 6.01674 6.23384 6.50762 6.65278 6.77614 7.33771 7.41462 8.91504 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.002598 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.435731 B =10775.655682 C =12248.464374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.317 3.683 4 C -0.161 4.161 5 C -0.012 4.012 6 C 0.011 3.989 7 N -0.411 5.411 8 C 0.188 3.812 9 N -0.321 5.321 10 N -0.312 5.312 11 C 0.158 3.842 12 S 0.007 5.993 13 C -0.090 4.090 14 C 0.040 3.960 15 H 0.132 0.868 16 C 0.241 3.759 17 N -0.485 5.485 18 C 0.001 3.999 19 C -0.531 4.531 20 H 0.035 0.965 21 C 0.008 3.992 22 N -0.951 5.951 23 Si 0.942 3.058 24 H -0.257 1.257 25 H -0.295 1.295 26 H -0.238 1.238 27 C 0.155 3.845 28 N -0.540 5.540 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.272 0.728 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.265 0.735 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.363 -24.161 19.947 33.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.214 6.214 3 C 0.138 3.862 4 C -0.182 4.182 5 C -0.038 4.038 6 C -0.083 4.083 7 N -0.102 5.102 8 C -0.100 4.100 9 N -0.158 5.158 10 N -0.155 5.155 11 C -0.217 4.217 12 S 0.237 5.763 13 C -0.240 4.240 14 C 0.017 3.983 15 H 0.150 0.850 16 C -0.076 4.076 17 N -0.161 5.161 18 C -0.039 4.039 19 C -0.569 4.569 20 H 0.053 0.947 21 C -0.189 4.189 22 N -0.591 5.591 23 Si 0.765 3.235 24 H -0.182 1.182 25 H -0.222 1.222 26 H -0.161 1.161 27 C -0.003 4.003 28 N -0.263 5.263 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.203 0.797 33 H 0.204 0.796 34 H 0.288 0.712 35 H 0.122 0.878 36 H 0.154 0.846 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.814 -23.965 20.047 32.750 hybrid contribution 0.861 0.998 -0.092 1.321 sum 10.675 -22.967 19.955 32.244 Atomic orbital electron populations 1.23120 0.75641 1.05022 1.02337 1.86272 1.24412 1.23696 1.87013 1.20432 0.90607 0.84724 0.90434 1.21362 0.91097 1.00245 1.05456 1.21668 1.02216 0.88420 0.91485 1.18562 0.93399 0.83094 1.13287 1.43908 1.30741 1.09808 1.25708 1.27743 0.91206 0.93060 0.98027 1.73929 1.20397 1.11785 1.09682 1.74710 1.07126 1.22785 1.10925 1.27102 1.05174 0.88190 1.01237 1.85855 1.40773 1.18973 1.30725 1.23737 1.05010 0.94571 1.00683 1.18742 0.80549 1.03032 0.95978 0.85037 1.29351 0.95287 0.91363 0.91623 1.81015 1.13001 1.10693 1.11430 1.19628 0.98919 0.90595 0.94783 1.21316 1.23577 1.01358 1.10624 0.94681 1.25944 0.97220 1.01245 0.94505 1.70065 1.42063 1.27318 1.19696 0.85777 0.79313 0.77514 0.80880 1.18155 1.22160 1.16148 1.22338 0.91253 0.94548 0.92191 1.67415 1.40761 0.98433 1.19734 0.92291 0.92748 0.85557 0.79687 0.79618 0.71225 0.87848 0.84572 0.94985 0.91408 0.92581 0.82654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.38 113.37 1.18 1.55 16 2 O -0.31 -4.46 10.48 -90.52 -0.95 -5.41 16 3 C 0.32 4.86 7.49 84.80 0.63 5.49 16 4 C -0.16 -1.46 10.04 22.45 0.23 -1.23 16 5 C -0.01 -0.10 9.87 22.55 0.22 0.12 16 6 C 0.01 0.16 5.94 38.12 0.23 0.39 16 7 N -0.41 -7.59 2.93 -349.24 -1.02 -8.62 16 8 C 0.19 3.02 12.55 179.70 2.26 5.28 16 9 N -0.32 -8.13 12.17 -59.19 -0.72 -8.85 16 10 N -0.31 -8.92 11.60 -56.70 -0.66 -9.58 16 11 C 0.16 3.89 7.92 179.47 1.42 5.31 16 12 S 0.01 0.17 20.33 -56.49 -1.15 -0.98 16 13 C -0.09 -2.39 4.65 71.98 0.33 -2.05 16 14 C 0.04 1.33 2.21 -12.60 -0.03 1.30 16 15 H 0.13 4.00 8.14 -2.38 -0.02 3.98 16 16 C 0.24 9.44 13.30 89.45 1.19 10.63 16 17 N -0.48 -21.08 18.53 20.00 0.37 -20.71 16 18 C 0.00 0.04 3.49 29.85 0.10 0.14 16 19 C -0.53 -28.11 9.15 25.60 0.23 -27.88 16 20 H 0.03 2.08 7.84 -2.91 -0.02 2.06 16 21 C 0.01 0.45 5.47 84.65 0.46 0.91 16 22 N -0.95 -58.31 13.96 21.45 0.30 -58.01 16 23 Si 0.94 41.49 27.47 68.60 1.88 43.38 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 27 C 0.15 2.90 10.16 84.77 0.86 3.76 16 28 N -0.54 -10.30 9.20 -308.49 -2.84 -13.14 16 29 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 30 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.19 0.56 8.06 -2.91 -0.02 0.53 16 33 H 0.19 0.36 8.06 -2.91 -0.02 0.33 16 34 H 0.27 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.14 3.17 8.14 -2.40 -0.02 3.15 16 37 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 38 H 0.07 2.39 7.57 -2.39 -0.02 2.37 16 39 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.16 3.23 7.68 -2.91 -0.02 3.20 16 Total: -1.00 -77.74 371.61 5.57 -72.18 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.03 Total: 6.01 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 9.32 Total: 3.73 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -4.57 Total: -118.90 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.95 Total: -5.41 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.88 Total: 43.38 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.15 Total: -0.98 kcal Total: -77.74 5.57 -72.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171423686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.156 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds