Wall clock time and date at job start Wed Apr 1 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21299 * 119.99842 * 2 1 4 4 N 1.34773 * 120.00540 * 179.97438 * 2 1 3 5 5 C 1.40154 * 120.00276 * 185.27941 * 4 2 1 6 6 C 1.38875 * 119.99553 * 33.30124 * 5 4 2 7 7 C 1.38033 * 120.00346 * 180.02562 * 6 5 4 8 8 C 1.38914 * 119.99686 * 359.97438 * 7 6 5 9 9 N 1.39895 * 120.00452 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99985 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47153 * 180.02562 * 10 9 8 12 12 O 1.21292 * 120.00238 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00290 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00102 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00233 * 359.97438 * 14 13 11 16 16 C 1.38952 * 119.99876 * 179.97438 * 14 13 11 17 17 N 1.31412 * 120.00185 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47329 * 60.00348 * 18 16 14 20 20 H 1.48507 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47372 * 300.00051 * 18 16 14 22 22 C 1.38864 * 119.99049 * 0.24880 * 8 7 6 23 23 C 1.50697 * 120.00289 * 179.72881 * 22 8 7 24 24 F 1.39900 * 109.47365 * 180.02562 * 23 22 8 25 25 F 1.39910 * 109.47154 * 300.00299 * 23 22 8 26 26 F 1.39907 * 109.47236 * 60.00176 * 23 22 8 27 27 C 1.38084 * 119.99330 * 359.51769 * 22 8 7 28 28 H 1.09003 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47545 * 300.00044 * 1 2 3 30 30 H 1.09001 * 109.47464 * 60.00749 * 1 2 3 31 31 H 0.97000 * 119.99897 * 5.26961 * 4 2 1 32 32 H 1.07994 * 119.99410 * 359.97438 * 6 5 4 33 33 H 1.08004 * 120.00279 * 179.97438 * 7 6 5 34 34 H 0.97001 * 119.99912 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47485 * 59.99636 * 10 9 8 36 36 H 1.09001 * 109.47070 * 299.99563 * 10 9 8 37 37 H 0.97002 * 119.99878 * 359.97438 * 13 11 10 38 38 H 0.97004 * 120.00300 * 179.97438 * 17 16 14 39 39 H 1.08007 * 119.99864 * 180.20472 * 27 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5780 -1.1696 0.1122 6 6 4.2156 -0.1967 0.8709 7 6 5.5915 -0.1986 0.9806 8 6 6.3385 -1.1741 0.3324 9 7 7.7331 -1.1760 0.4430 10 6 8.4058 -0.1494 1.2429 11 6 9.8953 -0.3739 1.1985 12 8 10.3502 -1.3006 0.5618 13 7 10.7220 0.4550 1.8663 14 6 12.0770 0.2503 1.8263 15 1 12.4819 -0.5753 1.2600 16 6 12.9293 1.1052 2.5143 17 7 12.4366 2.1096 3.2038 18 14 14.7755 0.8260 2.4604 19 1 15.2472 0.9043 1.0546 20 1 15.4575 1.8672 3.2706 21 1 15.0897 -0.5157 3.0139 22 6 5.7011 -2.1441 -0.4299 23 6 6.5116 -3.1989 -1.1382 24 9 5.6538 -4.0558 -1.8361 25 9 7.3907 -2.5858 -2.0375 26 9 7.2429 -3.9339 -0.1989 27 6 4.3243 -2.1447 -0.5355 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.6991 -2.0054 -0.0763 32 1 3.6348 0.5619 1.3744 33 1 6.0874 0.5583 1.5703 34 1 8.2546 -1.8574 -0.0093 35 1 8.0597 -0.2080 2.2748 36 1 8.1751 0.8359 0.8378 37 1 10.3583 1.1963 2.3752 38 1 13.0315 2.7062 3.6845 39 1 3.8283 -2.9010 -1.1257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176907423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:12 Heat of formation + Delta-G solvation = -193.772849 kcal Electronic energy + Delta-G solvation = -29806.290232 eV Core-core repulsion = 24912.829379 eV Total energy + Delta-G solvation = -4893.460852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.07134 -47.61710 -47.46750 -40.72112 -39.25659 -38.28607 -35.91263 -34.31470 -33.74527 -32.03645 -31.41077 -30.64893 -28.79605 -26.84843 -25.71460 -24.51005 -22.68510 -22.01170 -20.70978 -19.59696 -18.76993 -18.39711 -18.34609 -18.04094 -17.41917 -17.25807 -16.32563 -15.85258 -15.65320 -15.30446 -14.94778 -14.75066 -14.42301 -14.39102 -14.29477 -14.07299 -13.95283 -13.88545 -13.66267 -13.65808 -13.49379 -13.32423 -13.14021 -12.91965 -12.63353 -12.28853 -12.25159 -12.19556 -11.63598 -11.37738 -11.13576 -10.83086 -10.51843 -10.32876 -10.19812 -9.65316 -9.43396 -9.24351 -8.67207 -8.13172 -7.30307 -6.54154 -3.95975 0.97403 1.25642 2.32211 2.67581 2.89627 3.12678 3.20533 3.23336 3.37357 3.52616 3.69822 3.86291 4.09728 4.10302 4.38428 4.53390 4.68693 4.73994 4.77490 4.98497 5.01559 5.13307 5.20303 5.26473 5.41807 5.54069 5.62621 5.67373 5.78720 6.00782 6.03997 6.10210 6.28333 6.66304 7.11092 7.17414 7.44002 7.74976 7.84434 7.91141 8.42292 9.02357 9.35282 9.83708 10.62662 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.002636 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.641014 B =10619.201021 C =12327.510696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.530 6.530 4 N -0.667 5.667 5 C 0.067 3.933 6 C -0.034 4.034 7 C -0.184 4.184 8 C 0.269 3.731 9 N -0.714 5.714 10 C 0.107 3.893 11 C 0.427 3.573 12 O -0.591 6.591 13 N -0.548 5.548 14 C -0.305 4.305 15 H 0.105 0.895 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.256 4.256 23 C 0.513 3.487 24 F -0.182 7.182 25 F -0.175 7.175 26 F -0.175 7.175 27 C -0.046 4.046 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.409 0.591 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.395 0.605 38 H 0.275 0.725 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.170 -6.243 -4.184 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.295 3.705 3 O -0.405 6.405 4 N -0.314 5.314 5 C -0.028 4.028 6 C -0.055 4.055 7 C -0.208 4.208 8 C 0.158 3.842 9 N -0.343 5.343 10 C -0.021 4.021 11 C 0.212 3.788 12 O -0.477 6.477 13 N -0.183 5.183 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.176 4.176 17 N -0.536 5.536 18 Si 0.760 3.240 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.264 4.264 23 C 0.459 3.541 24 F -0.163 7.163 25 F -0.156 7.156 26 F -0.156 7.156 27 C -0.067 4.067 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.245 0.755 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.229 0.771 38 H 0.085 0.915 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.190 -5.794 -4.362 24.297 hybrid contribution 0.803 -0.486 -0.013 0.939 sum -22.386 -6.280 -4.375 23.659 Atomic orbital electron populations 1.21842 0.90925 1.04438 1.05634 1.20974 0.90787 0.83252 0.75472 1.90766 1.70413 1.31220 1.48148 1.43518 1.05008 1.09629 1.73215 1.17202 0.82746 0.99994 1.02853 1.21052 0.93881 0.96580 0.93952 1.20614 0.93317 1.00943 1.05880 1.17517 0.84032 0.91697 0.90923 1.44884 1.02208 1.33285 1.53915 1.21085 0.93087 0.91821 0.96073 1.19645 0.87112 0.86223 0.85781 1.90532 1.76782 1.33509 1.46895 1.41769 1.06740 1.26549 1.43287 1.19686 0.80653 1.13355 1.29734 0.87720 1.25317 1.01053 0.95308 0.95963 1.69598 1.36751 1.15896 1.31340 0.85867 0.81427 0.78118 0.78551 1.19738 1.20825 1.19749 1.19032 0.94099 1.01652 1.11572 1.18153 0.78017 0.80871 0.77074 1.93120 1.70262 1.72581 1.80365 1.93246 1.70487 1.82710 1.69144 1.93243 1.78596 1.78864 1.64939 1.20291 0.91196 0.98632 0.96588 0.90402 0.88393 0.88483 0.75546 0.84238 0.84283 0.74637 0.89934 0.89919 0.77096 0.91520 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.39 36.00 0.37 -0.29 16 2 C 0.51 4.37 7.68 -10.99 -0.08 4.29 16 3 O -0.53 -7.05 14.78 5.54 0.08 -6.97 16 4 N -0.67 -5.09 5.35 -9.82 -0.05 -5.14 16 5 C 0.07 0.73 6.28 -83.60 -0.53 0.20 16 6 C -0.03 -0.41 8.65 -39.42 -0.34 -0.76 16 7 C -0.18 -2.41 9.31 -39.41 -0.37 -2.78 16 8 C 0.27 3.97 6.55 -83.70 -0.55 3.42 16 9 N -0.71 -12.22 5.45 -59.76 -0.33 -12.55 16 10 C 0.11 1.84 5.39 -5.20 -0.03 1.81 16 11 C 0.43 9.79 7.85 -10.99 -0.09 9.71 16 12 O -0.59 -15.69 15.24 5.55 0.08 -15.61 16 13 N -0.55 -13.42 5.29 -10.97 -0.06 -13.48 16 14 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 15 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 17 N -0.90 -23.66 13.05 55.50 0.72 -22.94 16 18 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 C -0.26 -3.50 5.38 -104.45 -0.56 -4.07 16 23 C 0.51 7.43 2.80 36.00 0.10 7.53 16 24 F -0.18 -2.32 15.97 2.25 0.04 -2.28 16 25 F -0.17 -2.82 16.24 2.25 0.04 -2.79 16 26 F -0.18 -2.77 16.23 2.25 0.04 -2.73 16 27 C -0.05 -0.51 9.34 -39.42 -0.37 -0.88 16 28 H 0.08 0.10 7.92 -51.93 -0.41 -0.31 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.41 1.61 8.66 -40.82 -0.35 1.26 16 32 H 0.14 1.69 6.41 -52.49 -0.34 1.36 16 33 H 0.14 1.64 6.73 -52.48 -0.35 1.29 16 34 H 0.41 7.91 4.86 -40.82 -0.20 7.71 16 35 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 36 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 37 H 0.40 9.11 7.90 -40.82 -0.32 8.79 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.14 1.18 7.15 -52.48 -0.38 0.80 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -33.17 350.57 -5.39 -38.55 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -3.53 Total: 14.71 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -2.68 Total: 10.34 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.29 Total: -54.11 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.58 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.11 Total: -7.80 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.17 -5.39 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176907423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.220 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds