Wall clock time and date at job start Wed Apr 1 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21299 * 119.99842 * 2 1 4 4 N 1.34773 * 120.00540 * 179.97438 * 2 1 3 5 5 C 1.40154 * 120.00276 * 185.27941 * 4 2 1 6 6 C 1.38875 * 119.99553 * 33.30124 * 5 4 2 7 7 C 1.38033 * 120.00346 * 180.02562 * 6 5 4 8 8 C 1.38914 * 119.99686 * 359.97438 * 7 6 5 9 9 N 1.39895 * 120.00452 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99985 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47153 * 180.02562 * 10 9 8 12 12 O 1.21292 * 120.00238 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00290 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00102 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00233 * 359.97438 * 14 13 11 16 16 C 1.38952 * 119.99876 * 179.97438 * 14 13 11 17 17 N 1.31412 * 120.00185 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47329 * 60.00348 * 18 16 14 20 20 H 1.48507 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47372 * 300.00051 * 18 16 14 22 22 C 1.38864 * 119.99049 * 0.24880 * 8 7 6 23 23 C 1.50697 * 120.00289 * 179.72881 * 22 8 7 24 24 F 1.39900 * 109.47365 * 180.02562 * 23 22 8 25 25 F 1.39910 * 109.47154 * 300.00299 * 23 22 8 26 26 F 1.39907 * 109.47236 * 60.00176 * 23 22 8 27 27 C 1.38084 * 119.99330 * 359.51769 * 22 8 7 28 28 H 1.09003 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47545 * 300.00044 * 1 2 3 30 30 H 1.09001 * 109.47464 * 60.00749 * 1 2 3 31 31 H 0.97000 * 119.99897 * 5.26961 * 4 2 1 32 32 H 1.07994 * 119.99410 * 359.97438 * 6 5 4 33 33 H 1.08004 * 120.00279 * 179.97438 * 7 6 5 34 34 H 0.97001 * 119.99912 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47485 * 59.99636 * 10 9 8 36 36 H 1.09001 * 109.47070 * 299.99563 * 10 9 8 37 37 H 0.97002 * 119.99878 * 359.97438 * 13 11 10 38 38 H 0.97004 * 120.00300 * 179.97438 * 17 16 14 39 39 H 1.08007 * 119.99864 * 180.20472 * 27 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5780 -1.1696 0.1122 6 6 4.2156 -0.1967 0.8709 7 6 5.5915 -0.1986 0.9806 8 6 6.3385 -1.1741 0.3324 9 7 7.7331 -1.1760 0.4430 10 6 8.4058 -0.1494 1.2429 11 6 9.8953 -0.3739 1.1985 12 8 10.3502 -1.3006 0.5618 13 7 10.7220 0.4550 1.8663 14 6 12.0770 0.2503 1.8263 15 1 12.4819 -0.5753 1.2600 16 6 12.9293 1.1052 2.5143 17 7 12.4366 2.1096 3.2038 18 14 14.7755 0.8260 2.4604 19 1 15.2472 0.9043 1.0546 20 1 15.4575 1.8672 3.2706 21 1 15.0897 -0.5157 3.0139 22 6 5.7011 -2.1441 -0.4299 23 6 6.5116 -3.1989 -1.1382 24 9 5.6538 -4.0558 -1.8361 25 9 7.3907 -2.5858 -2.0375 26 9 7.2429 -3.9339 -0.1989 27 6 4.3243 -2.1447 -0.5355 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.6991 -2.0054 -0.0763 32 1 3.6348 0.5619 1.3744 33 1 6.0874 0.5583 1.5703 34 1 8.2546 -1.8574 -0.0093 35 1 8.0597 -0.2080 2.2748 36 1 8.1751 0.8359 0.8378 37 1 10.3583 1.1963 2.3752 38 1 13.0315 2.7062 3.6845 39 1 3.8283 -2.9010 -1.1257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176907423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:12 Heat of formation + Delta-G solvation = -217.648078 kcal Electronic energy + Delta-G solvation = -29807.325539 eV Core-core repulsion = 24912.829379 eV Total energy + Delta-G solvation = -4894.496160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.23036 -48.73681 -48.68407 -41.57231 -40.53627 -39.74588 -37.01460 -36.06896 -34.92149 -33.40954 -32.99719 -31.36561 -29.80057 -28.12893 -26.90782 -26.16703 -23.69188 -23.04666 -21.55606 -21.23765 -20.15981 -19.76797 -19.52434 -19.44123 -18.59986 -18.01081 -17.29012 -17.23128 -16.98370 -16.49021 -16.42346 -16.11691 -15.81097 -15.60855 -15.53935 -15.23372 -15.11917 -14.88041 -14.84880 -14.83077 -14.70531 -14.61361 -14.00850 -13.94423 -13.69563 -13.55578 -13.40818 -13.10800 -13.00746 -12.92705 -12.49700 -12.39249 -12.14962 -11.83174 -11.59110 -10.97895 -10.58674 -10.41941 -10.20777 -10.11541 -8.53342 -8.36313 -6.03090 -0.02212 0.30311 1.35885 1.40626 1.51043 1.60322 1.64315 1.89340 2.04298 2.18696 2.31502 2.56633 2.77190 3.00860 3.08969 3.13763 3.38229 3.72286 3.90550 4.04702 4.11243 4.24434 4.34675 4.36507 4.42262 4.56903 4.69966 4.72961 4.73944 5.05144 5.15097 5.16054 5.35492 5.36935 5.72284 5.87197 6.06247 6.42910 6.48087 6.52869 7.02398 7.22196 7.41906 7.94767 8.63154 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.002636 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.641014 B =10619.201021 C =12327.510696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.503 3.497 3 O -0.581 6.581 4 N -0.655 5.655 5 C 0.077 3.923 6 C -0.041 4.041 7 C -0.185 4.185 8 C 0.247 3.753 9 N -0.731 5.731 10 C 0.122 3.878 11 C 0.426 3.574 12 O -0.631 6.631 13 N -0.557 5.557 14 C -0.339 4.339 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.913 5.913 18 Si 0.994 3.006 19 H -0.272 1.272 20 H -0.268 1.268 21 H -0.271 1.271 22 C -0.261 4.261 23 C 0.512 3.488 24 F -0.170 7.170 25 F -0.188 7.188 26 F -0.186 7.186 27 C -0.041 4.041 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.429 0.571 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.401 0.599 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.401 0.599 38 H 0.281 0.719 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.603 -6.396 -4.049 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.293 3.707 3 O -0.461 6.461 4 N -0.303 5.303 5 C -0.019 4.019 6 C -0.061 4.061 7 C -0.208 4.208 8 C 0.140 3.860 9 N -0.361 5.361 10 C -0.005 4.005 11 C 0.214 3.786 12 O -0.519 6.519 13 N -0.193 5.193 14 C -0.469 4.469 15 H 0.099 0.901 16 C -0.208 4.208 17 N -0.553 5.553 18 Si 0.817 3.183 19 H -0.197 1.197 20 H -0.193 1.193 21 H -0.196 1.196 22 C -0.269 4.269 23 C 0.458 3.542 24 F -0.152 7.152 25 F -0.170 7.170 26 F -0.168 7.168 27 C -0.061 4.061 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.269 0.731 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.239 0.761 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -25.711 -5.961 -4.216 26.727 hybrid contribution 1.379 -0.486 -0.103 1.466 sum -24.332 -6.447 -4.318 25.539 Atomic orbital electron populations 1.21882 0.86903 1.06904 1.06215 1.21884 0.92604 0.82392 0.73781 1.90750 1.71774 1.33069 1.50478 1.43535 1.03634 1.10760 1.72358 1.17333 0.84453 0.98852 1.01282 1.21166 0.93615 0.97037 0.94325 1.20739 0.93698 1.00686 1.05662 1.17680 0.83016 0.92962 0.92375 1.44818 1.03085 1.33279 1.54886 1.20989 0.88598 0.92999 0.97952 1.20610 0.89437 0.84738 0.83835 1.90502 1.78308 1.34980 1.48113 1.41797 1.06256 1.27202 1.44006 1.19644 0.82349 1.13763 1.31103 0.90132 1.26064 1.04900 0.94750 0.95122 1.69651 1.38166 1.16132 1.31344 0.84978 0.76478 0.78277 0.78565 1.19728 1.19278 1.19647 1.19150 0.95048 1.01185 1.11467 1.18294 0.77917 0.81161 0.76868 1.93134 1.69670 1.72257 1.80103 1.93217 1.71131 1.82998 1.69621 1.93218 1.79016 1.79160 1.65362 1.20523 0.90113 0.99145 0.96354 0.87060 0.87660 0.87853 0.73085 0.84182 0.83352 0.76105 0.87383 0.87768 0.76423 0.90977 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 10.39 71.23 0.74 0.04 16 2 C 0.50 7.42 7.68 87.66 0.67 8.09 16 3 O -0.58 -14.76 14.78 -3.09 -0.05 -14.81 16 4 N -0.65 -7.97 5.35 -303.35 -1.62 -9.60 16 5 C 0.08 1.49 6.28 38.10 0.24 1.73 16 6 C -0.04 -0.94 8.65 22.37 0.19 -0.74 16 7 C -0.18 -4.65 9.31 22.38 0.21 -4.44 16 8 C 0.25 7.18 6.55 38.17 0.25 7.43 16 9 N -0.73 -25.22 5.45 -342.99 -1.87 -27.09 16 10 C 0.12 4.17 5.39 85.63 0.46 4.63 16 11 C 0.43 20.03 7.85 87.66 0.69 20.72 16 12 O -0.63 -34.78 15.24 -3.07 -0.05 -34.83 16 13 N -0.56 -27.89 5.29 -306.99 -1.62 -29.52 16 14 C -0.34 -18.96 9.68 84.04 0.81 -18.14 16 15 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 16 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 17 N -0.91 -48.12 13.05 21.66 0.28 -47.83 16 18 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 C -0.26 -6.91 5.38 -19.75 -0.11 -7.02 16 23 C 0.51 14.68 2.80 71.23 0.20 14.87 16 24 F -0.17 -4.11 15.97 44.97 0.72 -3.40 16 25 F -0.19 -6.20 16.24 44.97 0.73 -5.47 16 26 F -0.19 -5.97 16.23 44.97 0.73 -5.24 16 27 C -0.04 -0.81 9.34 22.37 0.21 -0.60 16 28 H 0.11 -0.25 7.92 -2.39 -0.02 -0.27 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.43 1.65 8.66 -92.71 -0.80 0.85 16 32 H 0.14 3.26 6.41 -2.91 -0.02 3.24 16 33 H 0.15 3.33 6.73 -2.91 -0.02 3.31 16 34 H 0.40 15.83 4.86 -92.71 -0.45 15.38 16 35 H 0.11 3.12 7.95 -2.39 -0.02 3.10 16 36 H 0.10 3.10 7.95 -2.39 -0.02 3.08 16 37 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 38 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 39 H 0.16 2.28 7.15 -2.91 -0.02 2.26 16 Total: -1.00 -74.27 350.57 3.51 -70.76 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.81 Total: 36.05 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 5.04 Total: 26.65 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -4.83 Total: -114.03 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.09 Total: -49.64 kcal Atomic # 9 Polarization: -16.29 SS G_CDS: 2.18 Total: -14.11 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -74.27 3.51 -70.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176907423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.888 kcal (2) G-P(sol) polarization free energy of solvation -74.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds