Wall clock time and date at job start Wed Apr 1 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47751 * 2 1 4 4 C 1.50705 * 109.46967 * 239.99556 * 2 1 3 5 5 H 1.07994 * 120.00171 * 240.00039 * 4 2 1 6 6 C 1.37876 * 119.99819 * 60.00840 * 4 2 1 7 7 N 1.31520 * 120.00118 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47008 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.46666 * 299.99556 * 8 6 4 11 11 H 1.48491 * 109.47131 * 59.99491 * 8 6 4 12 12 N 1.46501 * 109.47060 * 119.99930 * 2 1 3 13 13 C 1.46501 * 119.99695 * 60.00099 * 12 2 1 14 14 C 1.34771 * 120.00034 * 239.99385 * 12 2 1 15 15 O 1.21354 * 120.00409 * 356.43194 * 14 12 2 16 16 C 1.49371 * 119.99933 * 176.42120 * 14 12 2 17 17 O 1.21359 * 119.99955 * 5.92164 * 16 14 12 18 18 N 1.34776 * 120.00119 * 185.92123 * 16 14 12 19 19 C 1.39247 * 120.00352 * 174.95341 * 18 16 14 20 20 C 1.39080 * 119.70248 * 185.06747 * 19 18 16 21 21 C 1.38358 * 119.09777 * 179.73349 * 20 19 18 22 22 C 1.38842 * 118.49314 * 0.53625 * 21 20 19 23 23 C 1.38089 * 119.31841 * 359.72226 * 22 21 20 24 24 C 1.50708 * 119.57344 * 180.02562 * 23 22 21 25 25 F 1.39905 * 109.47161 * 184.98417 * 24 23 22 26 26 F 1.39902 * 109.46846 * 304.97808 * 24 23 22 27 27 F 1.39894 * 109.47090 * 64.98244 * 24 23 22 28 28 N 1.31916 * 120.85597 * 0.02562 * 23 22 21 29 29 H 1.08996 * 109.47751 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46806 * 300.00867 * 1 2 3 31 31 H 1.09005 * 109.47135 * 59.99634 * 1 2 3 32 32 H 0.96992 * 120.00192 * 180.02562 * 7 6 4 33 33 H 1.08990 * 109.47498 * 95.98315 * 13 12 2 34 34 H 1.09011 * 109.46789 * 215.98339 * 13 12 2 35 35 H 1.09000 * 109.47339 * 335.97801 * 13 12 2 36 36 H 0.97005 * 120.00247 * 354.96011 * 18 16 14 37 37 H 1.07998 * 120.45140 * 0.02562 * 20 19 18 38 38 H 1.07995 * 120.75625 * 180.23891 * 21 20 19 39 39 H 1.07998 * 120.33913 * 179.75315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1205 -4.0080 9 1 1.8260 -0.4207 -5.2204 10 1 3.8063 -1.1212 -4.0081 11 1 1.8257 -2.5203 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.1400 1.1056 1.8597 16 6 3.2250 -0.7144 3.3418 17 8 2.9695 -1.8878 3.5168 18 7 3.8984 -0.0237 4.2831 19 6 4.2090 -0.6258 5.4997 20 6 4.8095 0.1234 6.5059 21 6 5.1076 -0.4860 7.7117 22 6 4.8040 -1.8319 7.8666 23 6 4.2127 -2.5161 6.8229 24 6 3.8801 -3.9771 6.9850 25 9 3.3984 -4.4829 5.7728 26 9 5.0314 -4.6788 7.3584 27 9 2.9019 -4.1257 7.9740 28 7 3.9352 -1.9075 5.6859 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 0.7083 1.1609 -3.4844 33 1 2.4671 -2.7352 1.0657 34 1 1.5196 -2.2597 2.4955 35 1 0.7428 -2.3282 0.8954 36 1 4.1666 0.8929 4.1132 37 1 5.0357 1.1678 6.3498 38 1 5.5705 0.0713 8.5126 39 1 5.0275 -2.3384 8.7939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190982207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:53 Heat of formation + Delta-G solvation = -143.834217 kcal Electronic energy + Delta-G solvation = -30315.265912 eV Core-core repulsion = 25423.970561 eV Total energy + Delta-G solvation = -4891.295351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.28649 -47.86579 -47.66222 -41.33055 -39.98670 -38.06076 -36.05217 -34.99954 -33.18904 -32.79371 -31.17784 -29.54646 -27.04782 -26.33268 -25.41864 -25.12900 -23.30521 -22.90236 -20.93573 -19.62674 -18.88871 -18.70212 -18.48659 -17.33626 -17.18807 -16.62187 -16.44882 -16.00914 -15.86765 -15.72948 -14.99091 -14.84748 -14.52539 -14.46643 -14.38362 -14.21128 -13.94724 -13.86525 -13.82658 -13.45839 -13.22744 -13.07220 -12.64627 -12.45800 -12.34425 -11.92083 -11.60314 -11.24888 -11.11280 -10.85675 -10.82680 -10.69901 -10.45471 -10.30660 -10.22571 -10.00864 -9.26965 -8.78772 -8.75717 -8.48705 -7.78510 -6.13479 -4.21836 0.29722 0.72759 1.83570 2.12754 2.42872 3.10793 3.27180 3.31469 3.31763 3.34757 3.63209 3.67475 3.93695 4.20236 4.26112 4.35235 4.46122 4.57451 4.61211 4.79336 4.81829 5.18331 5.29490 5.56235 5.68389 5.99644 6.14100 6.31052 6.52924 6.67575 6.68608 6.71405 6.93471 7.15157 7.30704 7.44163 7.62998 7.82980 7.96030 8.05820 8.30605 8.53956 8.82916 9.44502 10.91965 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002692 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.952773 B =10400.388010 C =11175.360677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.255 3.745 3 H 0.067 0.933 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.548 5.548 13 C 0.070 3.930 14 C 0.494 3.506 15 O -0.538 6.538 16 C 0.497 3.503 17 O -0.441 6.441 18 N -0.641 5.641 19 C 0.375 3.625 20 C -0.174 4.174 21 C -0.043 4.043 22 C -0.159 4.159 23 C 0.072 3.928 24 C 0.521 3.479 25 F -0.153 7.153 26 F -0.173 7.173 27 F -0.173 7.173 28 N -0.442 5.442 29 H 0.034 0.966 30 H 0.013 0.987 31 H 0.098 0.902 32 H 0.265 0.735 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.432 0.568 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -3.343 22.922 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.156 3.844 3 H 0.085 0.915 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.201 1.201 12 N -0.278 5.278 13 C -0.072 4.072 14 C 0.275 3.725 15 O -0.417 6.417 16 C 0.278 3.722 17 O -0.307 6.307 18 N -0.290 5.290 19 C 0.142 3.858 20 C -0.198 4.198 21 C -0.069 4.069 22 C -0.181 4.181 23 C -0.069 4.069 24 C 0.466 3.534 25 F -0.134 7.134 26 F -0.155 7.155 27 F -0.154 7.154 28 N -0.156 5.156 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.272 0.728 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.490 -3.996 21.912 23.199 hybrid contribution 0.781 0.154 -0.323 0.859 sum 7.270 -3.842 21.589 23.102 Atomic orbital electron populations 1.22122 0.97529 0.99886 1.01131 1.19189 0.91294 0.94563 0.79388 0.91516 1.21243 1.32267 1.13201 0.89983 0.92043 1.24879 0.94812 0.94944 0.98990 1.69858 1.36120 1.22545 1.24070 0.86494 0.79271 0.79640 0.81668 1.21114 1.20167 1.20099 1.48291 1.45210 1.12619 1.21712 1.22177 1.01185 0.81130 1.02739 1.19545 0.82068 0.86746 0.84190 1.90719 1.56194 1.17717 1.77073 1.21184 0.78692 0.87235 0.85044 1.90792 1.48317 1.14494 1.77130 1.43463 1.55000 1.18195 1.12315 1.18309 0.92815 0.88132 0.86525 1.21773 1.02593 1.01974 0.93461 1.21379 0.95260 0.93577 0.96692 1.21703 1.00750 0.95823 0.99811 1.20736 1.00589 0.93709 0.91840 1.17877 0.74602 0.86275 0.74674 1.93303 1.87939 1.88414 1.43768 1.93221 1.49988 1.80741 1.91530 1.93225 1.63335 1.96294 1.62574 1.67078 1.18052 1.08938 1.21561 0.94672 0.96778 0.88386 0.92494 0.92761 0.89413 0.90994 0.72816 0.83114 0.82974 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.96 37.16 0.33 -3.15 16 2 C 0.25 6.41 2.63 -69.08 -0.18 6.23 16 3 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.94 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.55 -11.99 2.75 -175.80 -0.48 -12.47 16 13 C 0.07 1.35 8.75 59.85 0.52 1.88 16 14 C 0.49 10.10 7.73 -11.62 -0.09 10.01 16 15 O -0.54 -11.93 15.82 5.49 0.09 -11.85 16 16 C 0.50 8.56 7.73 -11.62 -0.09 8.47 16 17 O -0.44 -8.23 11.40 5.49 0.06 -8.17 16 18 N -0.64 -8.51 5.38 -11.86 -0.06 -8.58 16 19 C 0.37 4.56 7.42 -154.82 -1.15 3.41 16 20 C -0.17 -1.35 9.94 -39.23 -0.39 -1.74 16 21 C -0.04 -0.27 10.17 -39.31 -0.40 -0.67 16 22 C -0.16 -1.26 9.60 -39.41 -0.38 -1.63 16 23 C 0.07 0.84 6.26 -82.61 -0.52 0.32 16 24 C 0.52 6.20 3.31 36.01 0.12 6.32 16 25 F -0.15 -2.26 16.85 2.25 0.04 -2.22 16 26 F -0.17 -1.88 17.16 2.25 0.04 -1.84 16 27 F -0.17 -1.93 17.28 2.25 0.04 -1.89 16 28 N -0.44 -6.33 7.26 -8.62 -0.06 -6.40 16 29 H 0.03 0.77 6.67 -51.93 -0.35 0.43 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.60 5.36 -51.93 -0.28 1.32 16 35 H 0.07 1.35 6.44 -51.93 -0.33 1.02 16 36 H 0.43 4.69 8.18 -40.82 -0.33 4.36 16 37 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.15 0.38 8.06 -52.49 -0.42 -0.05 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -32.14 348.28 -5.71 -37.84 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.62 Total: 1.72 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: -2.60 Total: 16.64 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.02 Total: -51.43 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.15 Total: -20.01 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.12 Total: -5.95 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.14 -5.71 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190982207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.991 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds