Wall clock time and date at job start Wed Apr 1 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47751 * 2 1 4 4 C 1.50705 * 109.46967 * 239.99556 * 2 1 3 5 5 H 1.07994 * 120.00171 * 240.00039 * 4 2 1 6 6 C 1.37876 * 119.99819 * 60.00840 * 4 2 1 7 7 N 1.31520 * 120.00118 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47008 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.46666 * 299.99556 * 8 6 4 11 11 H 1.48491 * 109.47131 * 59.99491 * 8 6 4 12 12 N 1.46501 * 109.47060 * 119.99930 * 2 1 3 13 13 C 1.46501 * 119.99695 * 60.00099 * 12 2 1 14 14 C 1.34771 * 120.00034 * 239.99385 * 12 2 1 15 15 O 1.21354 * 120.00409 * 356.43194 * 14 12 2 16 16 C 1.49371 * 119.99933 * 176.42120 * 14 12 2 17 17 O 1.21359 * 119.99955 * 5.92164 * 16 14 12 18 18 N 1.34776 * 120.00119 * 185.92123 * 16 14 12 19 19 C 1.39247 * 120.00352 * 174.95341 * 18 16 14 20 20 C 1.39080 * 119.70248 * 185.06747 * 19 18 16 21 21 C 1.38358 * 119.09777 * 179.73349 * 20 19 18 22 22 C 1.38842 * 118.49314 * 0.53625 * 21 20 19 23 23 C 1.38089 * 119.31841 * 359.72226 * 22 21 20 24 24 C 1.50708 * 119.57344 * 180.02562 * 23 22 21 25 25 F 1.39905 * 109.47161 * 184.98417 * 24 23 22 26 26 F 1.39902 * 109.46846 * 304.97808 * 24 23 22 27 27 F 1.39894 * 109.47090 * 64.98244 * 24 23 22 28 28 N 1.31916 * 120.85597 * 0.02562 * 23 22 21 29 29 H 1.08996 * 109.47751 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46806 * 300.00867 * 1 2 3 31 31 H 1.09005 * 109.47135 * 59.99634 * 1 2 3 32 32 H 0.96992 * 120.00192 * 180.02562 * 7 6 4 33 33 H 1.08990 * 109.47498 * 95.98315 * 13 12 2 34 34 H 1.09011 * 109.46789 * 215.98339 * 13 12 2 35 35 H 1.09000 * 109.47339 * 335.97801 * 13 12 2 36 36 H 0.97005 * 120.00247 * 354.96011 * 18 16 14 37 37 H 1.07998 * 120.45140 * 0.02562 * 20 19 18 38 38 H 1.07995 * 120.75625 * 180.23891 * 21 20 19 39 39 H 1.07998 * 120.33913 * 179.75315 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1205 -4.0080 9 1 1.8260 -0.4207 -5.2204 10 1 3.8063 -1.1212 -4.0081 11 1 1.8257 -2.5203 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.1400 1.1056 1.8597 16 6 3.2250 -0.7144 3.3418 17 8 2.9695 -1.8878 3.5168 18 7 3.8984 -0.0237 4.2831 19 6 4.2090 -0.6258 5.4997 20 6 4.8095 0.1234 6.5059 21 6 5.1076 -0.4860 7.7117 22 6 4.8040 -1.8319 7.8666 23 6 4.2127 -2.5161 6.8229 24 6 3.8801 -3.9771 6.9850 25 9 3.3984 -4.4829 5.7728 26 9 5.0314 -4.6788 7.3584 27 9 2.9019 -4.1257 7.9740 28 7 3.9352 -1.9075 5.6859 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 0.7083 1.1609 -3.4844 33 1 2.4671 -2.7352 1.0657 34 1 1.5196 -2.2597 2.4955 35 1 0.7428 -2.3282 0.8954 36 1 4.1666 0.8929 4.1132 37 1 5.0357 1.1678 6.3498 38 1 5.5705 0.0713 8.5126 39 1 5.0275 -2.3384 8.7939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190982207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:53 Heat of formation + Delta-G solvation = -164.503898 kcal Electronic energy + Delta-G solvation = -30316.162216 eV Core-core repulsion = 25423.970561 eV Total energy + Delta-G solvation = -4892.191655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.19799 -48.73594 -48.65166 -42.38219 -41.20228 -39.50648 -37.63581 -36.30843 -34.73310 -33.86039 -32.06732 -31.45531 -28.10484 -27.71605 -27.34860 -26.50187 -24.33330 -23.83145 -22.39083 -20.97571 -19.98733 -19.59929 -19.45721 -18.79054 -18.34504 -18.29705 -17.57795 -17.23627 -17.15483 -16.78403 -16.60157 -16.00072 -15.89899 -15.55985 -15.41982 -15.11722 -15.02657 -14.81804 -14.81106 -14.72409 -14.50713 -14.47426 -14.07257 -13.72780 -13.60707 -13.45775 -13.02517 -13.01378 -12.77746 -12.73102 -12.39595 -12.23158 -12.17909 -12.03918 -11.25940 -11.10048 -10.99954 -10.56808 -10.13931 -9.69698 -9.51419 -8.18739 -6.35119 -0.44976 -0.02430 0.54223 1.09825 1.40903 1.42447 1.43335 1.51361 2.04215 2.30207 2.41158 2.49312 2.56720 2.91777 3.09541 3.21955 3.33943 3.60105 3.78770 3.92345 4.06474 4.26940 4.39643 4.62505 4.69672 4.74150 4.84551 4.92637 4.97086 4.98302 5.12352 5.35457 5.36359 5.48072 5.59418 5.68311 5.90284 6.07528 6.32390 6.54860 6.68248 6.83964 6.95368 7.35502 8.85641 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002692 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.952773 B =10400.388010 C =11175.360677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.260 3.740 3 H 0.027 0.973 4 C -0.546 4.546 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.964 3.036 9 H -0.279 1.279 10 H -0.277 1.277 11 H -0.267 1.267 12 N -0.561 5.561 13 C 0.080 3.920 14 C 0.489 3.511 15 O -0.561 6.561 16 C 0.507 3.493 17 O -0.461 6.461 18 N -0.627 5.627 19 C 0.339 3.661 20 C -0.152 4.152 21 C -0.029 4.029 22 C -0.139 4.139 23 C 0.040 3.960 24 C 0.520 3.480 25 F -0.177 7.177 26 F -0.169 7.169 27 F -0.171 7.171 28 N -0.488 5.488 29 H 0.045 0.955 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.267 0.733 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.442 0.558 37 H 0.187 0.813 38 H 0.204 0.796 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.557 -3.063 25.377 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.159 3.841 3 H 0.045 0.955 4 C -0.584 4.584 5 H 0.074 0.926 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.788 3.212 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.192 1.192 12 N -0.291 5.291 13 C -0.062 4.062 14 C 0.271 3.729 15 O -0.442 6.442 16 C 0.288 3.712 17 O -0.330 6.330 18 N -0.277 5.277 19 C 0.107 3.893 20 C -0.174 4.174 21 C -0.055 4.055 22 C -0.160 4.160 23 C -0.099 4.099 24 C 0.464 3.536 25 F -0.158 7.158 26 F -0.150 7.150 27 F -0.152 7.152 28 N -0.203 5.203 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.284 0.716 37 H 0.205 0.795 38 H 0.221 0.779 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.972 -3.722 24.435 25.971 hybrid contribution 0.416 0.115 -0.896 0.995 sum 8.388 -3.607 23.539 25.248 Atomic orbital electron populations 1.21925 0.96442 1.00380 1.00647 1.18829 0.92095 0.92691 0.80493 0.95474 1.21472 1.32562 1.13263 0.91132 0.92592 1.25647 0.94883 0.95575 1.01707 1.69975 1.36754 1.23531 1.24770 0.85528 0.78484 0.78890 0.78252 1.20420 1.20224 1.19188 1.48240 1.45950 1.13509 1.21381 1.22185 1.00968 0.79626 1.03451 1.20166 0.81109 0.86527 0.85108 1.90686 1.56763 1.18816 1.77888 1.20355 0.79446 0.86877 0.84558 1.90782 1.49855 1.14991 1.77380 1.43165 1.54010 1.18300 1.12270 1.18599 0.95498 0.88374 0.86806 1.22224 0.99630 1.03232 0.92356 1.22007 0.93609 0.92795 0.97041 1.22175 0.97792 0.96618 0.99435 1.20792 1.03108 0.93373 0.92659 1.18061 0.74622 0.86991 0.73899 1.93245 1.88330 1.88849 1.45398 1.93220 1.49601 1.80810 1.91385 1.93220 1.63359 1.96366 1.62290 1.66776 1.19496 1.10512 1.23480 0.93585 0.95472 0.90537 0.92326 0.93148 0.88274 0.90829 0.71638 0.79532 0.77908 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.50 8.96 71.98 0.64 -5.86 16 2 C 0.26 13.50 2.63 44.25 0.12 13.62 16 3 H 0.03 1.62 6.90 -2.39 -0.02 1.60 16 4 C -0.55 -30.05 8.37 25.60 0.21 -29.84 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.05 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -51.49 11.32 21.45 0.24 -51.24 16 8 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 12 N -0.56 -25.24 2.75 -828.48 -2.28 -27.52 16 13 C 0.08 3.13 8.75 127.77 1.12 4.24 16 14 C 0.49 20.57 7.73 87.25 0.67 21.24 16 15 O -0.56 -25.69 15.82 -3.26 -0.05 -25.74 16 16 C 0.51 17.73 7.73 87.24 0.67 18.41 16 17 O -0.46 -17.60 11.40 -3.27 -0.04 -17.64 16 18 N -0.63 -16.27 5.38 -309.78 -1.67 -17.94 16 19 C 0.34 7.69 7.42 132.97 0.99 8.68 16 20 C -0.15 -1.73 9.94 22.50 0.22 -1.50 16 21 C -0.03 -0.20 10.17 22.44 0.23 0.03 16 22 C -0.14 -1.66 9.60 22.38 0.21 -1.44 16 23 C 0.04 0.87 6.26 42.51 0.27 1.14 16 24 C 0.52 12.16 3.31 71.24 0.24 12.40 16 25 F -0.18 -5.39 16.85 44.97 0.76 -4.64 16 26 F -0.17 -3.51 17.16 44.97 0.77 -2.74 16 27 F -0.17 -3.71 17.28 44.97 0.78 -2.93 16 28 N -0.49 -13.70 7.26 -181.18 -1.32 -15.02 16 29 H 0.05 2.05 6.67 -2.39 -0.02 2.04 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 4.01 6.07 -2.38 -0.01 4.00 16 32 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.10 3.69 5.36 -2.47 -0.01 3.68 16 35 H 0.07 2.80 6.44 -2.39 -0.02 2.79 16 36 H 0.44 9.18 8.18 -92.70 -0.76 8.42 16 37 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 38 H 0.20 -0.56 8.06 -2.91 -0.02 -0.58 16 39 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -73.66 348.28 5.66 -68.00 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.38 Total: 9.38 kcal Atomic # 6 Polarization: 36.73 SS G_CDS: 6.05 Total: 42.78 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -5.02 Total: -111.71 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.09 Total: -43.38 kcal Atomic # 9 Polarization: -12.61 SS G_CDS: 2.31 Total: -10.31 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.66 5.66 -68.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190982207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.504 kcal (2) G-P(sol) polarization free energy of solvation -73.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds