Wall clock time and date at job start Wed Apr 1 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47428 * 2 1 4 4 C 1.50697 * 109.47130 * 120.00206 * 2 1 3 5 5 H 1.08001 * 119.99793 * 119.99511 * 4 2 1 6 6 C 1.37871 * 119.99833 * 299.99977 * 4 2 1 7 7 N 1.31512 * 120.00204 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00161 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46736 * 269.99906 * 8 6 4 10 10 H 1.48498 * 109.47070 * 29.99273 * 8 6 4 11 11 H 1.48492 * 109.47277 * 149.99812 * 8 6 4 12 12 N 1.46506 * 109.46752 * 240.00221 * 2 1 3 13 13 C 1.46504 * 120.00001 * 299.99671 * 12 2 1 14 14 C 1.34775 * 119.99963 * 120.00770 * 12 2 1 15 15 O 1.21352 * 119.99978 * 356.41159 * 14 12 2 16 16 C 1.49370 * 119.99818 * 176.42077 * 14 12 2 17 17 O 1.21362 * 119.99915 * 5.91411 * 16 14 12 18 18 N 1.34776 * 120.00049 * 185.91155 * 16 14 12 19 19 C 1.39237 * 120.00509 * 174.94987 * 18 16 14 20 20 C 1.39077 * 119.70655 * 185.05588 * 19 18 16 21 21 C 1.38358 * 119.10271 * 179.97438 * 20 19 18 22 22 C 1.50704 * 120.75349 * 179.97438 * 21 20 19 23 23 F 1.39892 * 109.47032 * 89.99861 * 22 21 20 24 24 F 1.39901 * 109.46977 * 210.00095 * 22 21 20 25 25 F 1.39899 * 109.46735 * 329.99812 * 22 21 20 26 26 C 1.38836 * 118.49512 * 0.02562 * 21 20 19 27 27 C 1.38103 * 119.31672 * 0.02562 * 26 21 20 28 28 N 1.31918 * 120.85225 * 359.71803 * 27 26 21 29 29 H 1.09000 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46912 * 300.00467 * 1 2 3 31 31 H 1.09007 * 109.47039 * 59.99732 * 1 2 3 32 32 H 0.96999 * 120.00184 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46511 * 95.98313 * 13 12 2 34 34 H 1.08997 * 109.47145 * 215.98259 * 13 12 2 35 35 H 1.09004 * 109.47216 * 335.98842 * 13 12 2 36 36 H 0.97012 * 119.99818 * 354.95363 * 18 16 14 37 37 H 1.08000 * 120.44734 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.34240 * 179.97438 * 26 21 20 39 39 H 1.08001 * 119.56982 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6033 8 14 2.3225 -1.1196 4.0079 9 1 1.3447 -2.1616 4.4122 10 1 3.6308 -1.7567 3.7119 11 1 2.4873 -0.1403 5.1119 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.0330 1.1434 -1.9253 16 6 3.3568 -0.7610 -3.2612 17 8 3.0315 -1.9098 -3.4789 18 7 4.2266 -0.1398 -4.0822 19 6 4.8325 -0.8462 -5.1179 20 6 5.8069 -0.2293 -5.8952 21 6 6.4012 -0.9430 -6.9207 22 6 7.4606 -0.3110 -7.7864 23 9 8.7202 -0.5363 -7.2211 24 9 7.4155 -0.8757 -9.0656 25 9 7.2291 1.0658 -7.8760 26 6 5.9987 -2.2544 -7.1349 27 6 5.0243 -2.8035 -6.3248 28 7 4.4786 -2.1004 -5.3511 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7096 1.1617 3.4843 33 1 0.7982 -2.1450 -2.0878 34 1 2.5056 -2.6083 -1.8918 35 1 1.4259 -2.5697 -0.4772 36 1 4.4305 0.7996 -3.9516 37 1 6.0963 0.7928 -5.7004 38 1 6.4425 -2.8388 -7.9273 39 1 4.7084 -3.8234 -6.4876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194088270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:55 Heat of formation + Delta-G solvation = -147.652698 kcal Electronic energy + Delta-G solvation = -29716.836751 eV Core-core repulsion = 24825.375819 eV Total energy + Delta-G solvation = -4891.460932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.59913 -48.11086 -48.06038 -41.31923 -39.98611 -38.07765 -36.05325 -34.98262 -33.65611 -32.82298 -30.64499 -29.56279 -27.24975 -26.36699 -25.37129 -25.08068 -23.85367 -22.67892 -20.92218 -19.61705 -19.06141 -18.92419 -18.78508 -17.51297 -17.09789 -16.48487 -16.33409 -16.03358 -15.94916 -15.70575 -15.10756 -14.95587 -14.86229 -14.59263 -14.55537 -14.46090 -14.38285 -14.20323 -14.16930 -13.47766 -13.27418 -12.81220 -12.59647 -12.56942 -12.42283 -11.90979 -11.68137 -11.25905 -11.16110 -10.90646 -10.81865 -10.70426 -10.53851 -10.35856 -10.24703 -9.95258 -9.28173 -8.79501 -8.73221 -8.51005 -7.80718 -6.16303 -4.25054 0.39482 0.53179 1.82623 2.05332 2.37350 3.19067 3.20291 3.22875 3.29988 3.32991 3.53184 3.61975 3.70171 3.95477 4.19536 4.33395 4.40393 4.42325 4.60946 4.77814 5.05412 5.11721 5.15604 5.42049 5.71976 6.01425 6.15094 6.22677 6.55362 6.64776 6.70510 6.75484 6.93025 7.14312 7.32180 7.52566 7.60776 7.83274 7.94027 8.03701 8.28158 8.51405 8.80108 9.41442 10.89153 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.002232 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.126846 B =12544.054888 C =12713.663983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.255 3.745 3 H 0.067 0.933 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.548 5.548 13 C 0.068 3.932 14 C 0.494 3.506 15 O -0.537 6.537 16 C 0.501 3.499 17 O -0.445 6.445 18 N -0.640 5.640 19 C 0.376 3.624 20 C -0.160 4.160 21 C -0.109 4.109 22 C 0.513 3.487 23 F -0.171 7.171 24 F -0.172 7.172 25 F -0.172 7.172 26 C -0.165 4.165 27 C 0.144 3.856 28 N -0.456 5.456 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.431 0.569 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.208 -4.679 -20.852 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.569 4.569 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.278 5.278 13 C -0.075 4.075 14 C 0.274 3.726 15 O -0.417 6.417 16 C 0.283 3.717 17 O -0.312 6.312 18 N -0.289 5.289 19 C 0.144 3.856 20 C -0.184 4.184 21 C -0.119 4.119 22 C 0.458 3.542 23 F -0.152 7.152 24 F -0.154 7.154 25 F -0.153 7.153 26 C -0.186 4.186 27 C -0.015 4.015 28 N -0.170 5.170 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.281 -5.124 -20.090 22.715 hybrid contribution 1.222 0.474 0.225 1.329 sum 10.502 -4.650 -19.865 22.946 Atomic orbital electron populations 1.22094 0.97468 0.99861 1.01092 1.19200 0.91442 0.94579 0.79241 0.91518 1.21276 1.32344 1.13277 0.89980 0.91948 1.24882 0.94803 0.94927 0.99011 1.69870 1.36093 1.22420 1.24005 0.86439 0.79272 0.79289 0.82103 1.20481 1.19842 1.21027 1.48293 1.44980 1.12727 1.21834 1.22204 1.01437 0.81784 1.02108 1.19552 0.82014 0.87215 0.83779 1.90723 1.60471 1.15012 1.75454 1.21135 0.79301 0.87187 0.84103 1.90752 1.54626 1.16178 1.69617 1.43447 1.42800 1.15173 1.27471 1.18337 0.89973 0.89174 0.88137 1.21230 0.98286 1.02302 0.96607 1.20069 0.97867 0.96308 0.97647 1.18097 0.81061 0.76410 0.78584 1.93254 1.42870 1.94359 1.84765 1.93213 1.96460 1.84804 1.40889 1.93224 1.94415 1.31492 1.96204 1.21892 1.00121 0.94101 1.02525 1.22815 0.90696 0.99752 0.88241 1.67775 1.26097 1.05035 1.18136 0.94781 0.88477 0.96773 0.92508 0.93307 0.89292 0.90312 0.72903 0.82989 0.83329 0.80943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.25 6.33 2.63 -69.08 -0.18 6.15 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -13.97 7.95 -34.44 -0.27 -14.25 16 5 H 0.06 1.63 7.44 -52.49 -0.39 1.24 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.55 -11.76 2.75 -175.80 -0.48 -12.24 16 13 C 0.07 1.25 8.49 59.85 0.51 1.75 16 14 C 0.49 9.96 7.73 -11.62 -0.09 9.87 16 15 O -0.54 -11.85 15.82 5.50 0.09 -11.77 16 16 C 0.50 8.43 7.73 -11.62 -0.09 8.34 16 17 O -0.44 -7.87 11.40 5.49 0.06 -7.81 16 18 N -0.64 -8.58 5.38 -11.86 -0.06 -8.65 16 19 C 0.38 4.60 7.42 -154.83 -1.15 3.45 16 20 C -0.16 -1.52 9.31 -39.23 -0.37 -1.89 16 21 C -0.11 -0.95 5.47 -104.35 -0.57 -1.52 16 22 C 0.51 4.27 3.39 36.01 0.12 4.39 16 23 F -0.17 -1.54 17.30 2.25 0.04 -1.50 16 24 F -0.17 -1.40 16.55 2.25 0.04 -1.37 16 25 F -0.17 -1.51 16.55 2.25 0.04 -1.47 16 26 C -0.16 -1.26 9.48 -39.41 -0.37 -1.63 16 27 C 0.14 1.30 11.18 -17.56 -0.20 1.11 16 28 N -0.46 -5.92 7.88 -12.39 -0.10 -6.01 16 29 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 30 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 31 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.59 5.36 -51.94 -0.28 1.31 16 35 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 36 H 0.43 4.90 8.18 -40.81 -0.33 4.56 16 37 H 0.15 1.12 7.69 -52.49 -0.40 0.71 16 38 H 0.15 0.75 7.69 -52.49 -0.40 0.34 16 39 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -30.73 347.63 -5.61 -36.34 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.65 Total: 3.01 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: -2.42 Total: 14.35 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.02 Total: -50.60 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.15 Total: -19.57 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.11 Total: -4.34 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.73 -5.61 -36.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194088270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.311 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds