Wall clock time and date at job start Wed Apr 1 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47428 * 2 1 4 4 C 1.50697 * 109.47130 * 120.00206 * 2 1 3 5 5 H 1.08001 * 119.99793 * 119.99511 * 4 2 1 6 6 C 1.37871 * 119.99833 * 299.99977 * 4 2 1 7 7 N 1.31512 * 120.00204 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00161 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46736 * 269.99906 * 8 6 4 10 10 H 1.48498 * 109.47070 * 29.99273 * 8 6 4 11 11 H 1.48492 * 109.47277 * 149.99812 * 8 6 4 12 12 N 1.46506 * 109.46752 * 240.00221 * 2 1 3 13 13 C 1.46504 * 120.00001 * 299.99671 * 12 2 1 14 14 C 1.34775 * 119.99963 * 120.00770 * 12 2 1 15 15 O 1.21352 * 119.99978 * 356.41159 * 14 12 2 16 16 C 1.49370 * 119.99818 * 176.42077 * 14 12 2 17 17 O 1.21362 * 119.99915 * 5.91411 * 16 14 12 18 18 N 1.34776 * 120.00049 * 185.91155 * 16 14 12 19 19 C 1.39237 * 120.00509 * 174.94987 * 18 16 14 20 20 C 1.39077 * 119.70655 * 185.05588 * 19 18 16 21 21 C 1.38358 * 119.10271 * 179.97438 * 20 19 18 22 22 C 1.50704 * 120.75349 * 179.97438 * 21 20 19 23 23 F 1.39892 * 109.47032 * 89.99861 * 22 21 20 24 24 F 1.39901 * 109.46977 * 210.00095 * 22 21 20 25 25 F 1.39899 * 109.46735 * 329.99812 * 22 21 20 26 26 C 1.38836 * 118.49512 * 0.02562 * 21 20 19 27 27 C 1.38103 * 119.31672 * 0.02562 * 26 21 20 28 28 N 1.31918 * 120.85225 * 359.71803 * 27 26 21 29 29 H 1.09000 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46912 * 300.00467 * 1 2 3 31 31 H 1.09007 * 109.47039 * 59.99732 * 1 2 3 32 32 H 0.96999 * 120.00184 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46511 * 95.98313 * 13 12 2 34 34 H 1.08997 * 109.47145 * 215.98259 * 13 12 2 35 35 H 1.09004 * 109.47216 * 335.98842 * 13 12 2 36 36 H 0.97012 * 119.99818 * 354.95363 * 18 16 14 37 37 H 1.08000 * 120.44734 * 0.02562 * 20 19 18 38 38 H 1.07997 * 120.34240 * 179.97438 * 26 21 20 39 39 H 1.08001 * 119.56982 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6033 8 14 2.3225 -1.1196 4.0079 9 1 1.3447 -2.1616 4.4122 10 1 3.6308 -1.7567 3.7119 11 1 2.4873 -0.1403 5.1119 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.0330 1.1434 -1.9253 16 6 3.3568 -0.7610 -3.2612 17 8 3.0315 -1.9098 -3.4789 18 7 4.2266 -0.1398 -4.0822 19 6 4.8325 -0.8462 -5.1179 20 6 5.8069 -0.2293 -5.8952 21 6 6.4012 -0.9430 -6.9207 22 6 7.4606 -0.3110 -7.7864 23 9 8.7202 -0.5363 -7.2211 24 9 7.4155 -0.8757 -9.0656 25 9 7.2291 1.0658 -7.8760 26 6 5.9987 -2.2544 -7.1349 27 6 5.0243 -2.8035 -6.3248 28 7 4.4786 -2.1004 -5.3511 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7096 1.1617 3.4843 33 1 0.7982 -2.1450 -2.0878 34 1 2.5056 -2.6083 -1.8918 35 1 1.4259 -2.5697 -0.4772 36 1 4.4305 0.7996 -3.9516 37 1 6.0963 0.7928 -5.7004 38 1 6.4425 -2.8388 -7.9273 39 1 4.7084 -3.8234 -6.4876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194088270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:55 Heat of formation + Delta-G solvation = -166.313459 kcal Electronic energy + Delta-G solvation = -29717.645943 eV Core-core repulsion = 24825.375819 eV Total energy + Delta-G solvation = -4892.270124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.26379 -48.76854 -48.73359 -42.38434 -41.19180 -39.49941 -37.61823 -36.27753 -34.71243 -34.42550 -31.58306 -31.37465 -28.05636 -27.80757 -27.34465 -26.46035 -24.62777 -23.84014 -22.26147 -20.99551 -19.98271 -19.59010 -19.54786 -18.89239 -18.37380 -18.15700 -17.51337 -17.20785 -17.05103 -16.86691 -16.60138 -16.02246 -15.85924 -15.57613 -15.52939 -15.24078 -15.12806 -15.01682 -14.86811 -14.84043 -14.70425 -14.38388 -14.01422 -13.60415 -13.50287 -13.42820 -13.16741 -13.02521 -12.75622 -12.71251 -12.37116 -12.24971 -12.13268 -12.09340 -11.34000 -11.23562 -10.95082 -10.56305 -10.12996 -9.64565 -9.48210 -8.18023 -6.34464 -0.37891 -0.27324 0.51627 1.05678 1.42843 1.43894 1.48429 1.54251 2.06564 2.32027 2.45738 2.52713 2.55414 2.87797 3.09551 3.12006 3.28594 3.49236 3.67849 3.73867 3.97485 4.35927 4.44043 4.48945 4.69722 4.71143 4.77148 4.84260 4.87980 4.98872 5.12306 5.32969 5.39396 5.44121 5.60544 5.72365 5.91878 6.08619 6.34679 6.57788 6.70403 6.90541 6.96466 7.36353 8.86776 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.002232 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.126846 B =12544.054888 C =12713.663983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.259 3.741 3 H 0.025 0.975 4 C -0.544 4.544 5 H 0.061 0.939 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.283 1.283 12 N -0.560 5.560 13 C 0.075 3.925 14 C 0.488 3.512 15 O -0.564 6.564 16 C 0.513 3.487 17 O -0.456 6.456 18 N -0.630 5.630 19 C 0.347 3.653 20 C -0.151 4.151 21 C -0.117 4.117 22 C 0.520 3.480 23 F -0.174 7.174 24 F -0.169 7.169 25 F -0.175 7.175 26 C -0.141 4.141 27 C 0.137 3.863 28 N -0.491 5.491 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.267 0.733 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.438 0.562 37 H 0.170 0.830 38 H 0.181 0.819 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -6.280 -22.428 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.158 3.842 3 H 0.043 0.957 4 C -0.582 4.582 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.196 1.196 11 H -0.209 1.209 12 N -0.290 5.290 13 C -0.067 4.067 14 C 0.270 3.730 15 O -0.444 6.444 16 C 0.293 3.707 17 O -0.325 6.325 18 N -0.279 5.279 19 C 0.117 3.883 20 C -0.174 4.174 21 C -0.126 4.126 22 C 0.466 3.534 23 F -0.156 7.156 24 F -0.150 7.150 25 F -0.156 7.156 26 C -0.162 4.162 27 C -0.021 4.021 28 N -0.206 5.206 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.279 0.721 37 H 0.187 0.813 38 H 0.198 0.802 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 10.526 -6.734 -21.720 25.058 hybrid contribution 0.936 0.971 0.543 1.454 sum 11.462 -5.762 -21.176 24.759 Atomic orbital electron populations 1.21901 0.96550 1.00355 1.00445 1.18832 0.92118 0.92697 0.80533 0.95703 1.21504 1.32478 1.13317 0.90903 0.92117 1.25672 0.94910 0.95557 1.01820 1.69994 1.36915 1.23558 1.24685 0.85447 0.78826 0.78281 0.78431 1.19403 1.19637 1.20886 1.48247 1.45614 1.13787 1.21343 1.22259 1.02354 0.80049 1.02049 1.20170 0.81257 0.87068 0.84533 1.90694 1.61097 1.16315 1.76343 1.20254 0.80062 0.86751 0.83586 1.90734 1.55519 1.16268 1.69942 1.43168 1.41984 1.15476 1.27318 1.18382 0.91493 0.89601 0.88787 1.21333 0.97078 1.03054 0.95951 1.20208 0.98018 0.96861 0.97554 1.17954 0.80710 0.76226 0.78544 1.93254 1.43104 1.94364 1.84853 1.93223 1.96425 1.84721 1.40630 1.93224 1.94407 1.31756 1.96214 1.22268 0.98393 0.93600 1.01968 1.23319 0.90721 1.00660 0.87434 1.67662 1.27463 1.05680 1.19798 0.93572 0.90700 0.95757 0.92392 0.91872 0.88441 0.90945 0.72067 0.81294 0.80153 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.97 71.98 0.65 -5.74 16 2 C 0.26 13.24 2.63 44.24 0.12 13.36 16 3 H 0.03 1.47 6.90 -2.39 -0.02 1.46 16 4 C -0.54 -29.10 7.95 25.60 0.20 -28.89 16 5 H 0.06 3.19 7.44 -2.91 -0.02 3.17 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -51.09 11.32 21.44 0.24 -50.85 16 8 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.56 -24.40 2.75 -828.46 -2.28 -26.68 16 13 C 0.07 2.73 8.49 127.77 1.08 3.82 16 14 C 0.49 20.09 7.73 87.24 0.67 20.76 16 15 O -0.56 -25.74 15.82 -3.25 -0.05 -25.79 16 16 C 0.51 17.25 7.73 87.24 0.67 17.92 16 17 O -0.46 -15.89 11.40 -3.28 -0.04 -15.93 16 18 N -0.63 -16.69 5.38 -309.79 -1.67 -18.35 16 19 C 0.35 8.10 7.42 132.97 0.99 9.08 16 20 C -0.15 -2.59 9.31 22.50 0.21 -2.38 16 21 C -0.12 -1.72 5.47 -19.69 -0.11 -1.83 16 22 C 0.52 7.33 3.39 71.24 0.24 7.57 16 23 F -0.17 -2.73 17.30 44.97 0.78 -1.95 16 24 F -0.17 -2.25 16.55 44.97 0.74 -1.51 16 25 F -0.17 -2.69 16.55 44.97 0.74 -1.95 16 26 C -0.14 -1.69 9.48 22.38 0.21 -1.47 16 27 C 0.14 2.12 11.18 84.65 0.95 3.06 16 28 N -0.49 -12.00 7.88 -193.11 -1.52 -13.52 16 29 H 0.05 2.03 7.67 -2.39 -0.02 2.01 16 30 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 31 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 3.43 5.36 -2.48 -0.01 3.41 16 35 H 0.07 2.71 7.12 -2.39 -0.02 2.69 16 36 H 0.44 9.94 8.18 -92.70 -0.76 9.18 16 37 H 0.17 2.18 7.69 -2.91 -0.02 2.16 16 38 H 0.18 0.99 7.69 -2.91 -0.02 0.97 16 39 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -67.07 347.63 5.70 -61.37 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.38 Total: 14.04 kcal Atomic # 6 Polarization: 30.49 SS G_CDS: 6.34 Total: 36.82 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -5.23 Total: -109.41 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.09 Total: -41.72 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 2.27 Total: -5.41 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.07 5.70 -61.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194088270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.942 kcal (2) G-P(sol) polarization free energy of solvation -67.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds