Wall clock time and date at job start Wed Apr 1 2020 03:09:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34768 * 120.00252 * 2 1
4 4 O 1.21488 * 120.00296 * 359.97438 * 3 2 1
5 5 C 1.48339 * 120.00149 * 179.97438 * 3 2 1
6 6 C 1.39299 * 119.57558 * 179.97438 * 5 3 2
7 7 C 1.38449 * 119.18996 * 179.97438 * 6 5 3
8 8 C 1.39860 * 118.36356 * 0.02562 * 7 6 5
9 9 C 1.48001 * 120.46725 * 179.97438 * 8 7 6
10 10 O 1.21533 * 119.99995 * 132.59811 * 9 8 7
11 11 N 1.34774 * 120.00094 * 312.60417 * 9 8 7
12 12 C 1.46503 * 120.00149 * 186.03769 * 11 9 8
13 13 C 1.50696 * 109.47274 * 89.99564 * 12 11 9
14 14 H 1.08004 * 120.00045 * 359.97438 * 13 12 11
15 15 C 1.37881 * 120.00155 * 179.97438 * 13 12 11
16 16 N 1.31517 * 119.99674 * 0.02562 * 15 13 12
17 17 Si 1.86800 * 120.00022 * 179.97438 * 15 13 12
18 18 H 1.48492 * 109.47256 * 0.02562 * 17 15 13
19 19 H 1.48506 * 109.46780 * 120.00279 * 17 15 13
20 20 H 1.48497 * 109.47339 * 239.99847 * 17 15 13
21 21 C 1.46504 * 119.99817 * 6.03172 * 11 9 8
22 22 C 1.53002 * 109.46914 * 104.59675 * 21 11 9
23 23 F 1.39891 * 109.47167 * 67.41366 * 22 21 11
24 24 F 1.39899 * 109.46955 * 187.41686 * 22 21 11
25 25 F 1.39902 * 109.46841 * 307.41027 * 22 21 11
26 26 C 1.39733 * 119.07003 * 359.97438 * 8 7 6
27 27 N 1.31412 * 120.72054 * 0.02562 * 26 8 7
28 28 H 1.08994 * 109.47428 * 300.00543 * 1 2 3
29 29 H 1.09008 * 109.46915 * 60.00219 * 1 2 3
30 30 H 1.08997 * 109.47394 * 179.97438 * 1 2 3
31 31 H 0.97009 * 119.99732 * 179.97438 * 2 1 3
32 32 H 1.07999 * 120.40273 * 0.25926 * 6 5 3
33 33 H 1.08004 * 120.81471 * 180.02562 * 7 6 5
34 34 H 1.08997 * 109.47201 * 209.99858 * 12 11 9
35 35 H 1.09000 * 109.46742 * 329.99446 * 12 11 9
36 36 H 0.96996 * 119.99757 * 179.97438 * 16 15 13
37 37 H 1.09002 * 109.47092 * 224.59596 * 21 11 9
38 38 H 1.08998 * 109.47214 * 344.59626 * 21 11 9
39 39 H 1.08002 * 119.63569 * 179.97438 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 1.5315 2.2193 -0.0005
5 6 3.6223 1.1671 0.0006
6 6 4.3098 2.3785 0.0000
7 6 5.6943 2.3692 0.0011
8 6 6.3504 1.1340 0.0022
9 6 7.8290 1.0697 0.0028
10 8 8.4048 0.3321 0.7783
11 7 8.5369 1.8292 -0.8565
12 6 9.9903 1.6700 -0.9488
13 6 10.3168 0.6319 -1.9912
14 1 9.5212 0.1396 -2.5308
15 6 11.6312 0.3106 -2.2562
16 7 12.6000 0.9098 -1.5988
17 14 12.0358 -0.9768 -3.5479
18 1 10.7771 -1.4978 -4.1388
19 1 12.8663 -0.3631 -4.6151
20 1 12.7859 -2.0924 -2.9170
21 6 7.8529 2.8140 -1.6985
22 6 8.1021 4.2186 -1.1454
23 9 9.4533 4.5470 -1.2983
24 9 7.3159 5.1411 -1.8441
25 9 7.7647 4.2519 0.2119
26 6 5.5903 -0.0385 0.0026
27 7 4.2772 0.0127 0.0016
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0276 -0.0005
31 1 1.9500 -0.8401 0.0004
32 1 3.7695 3.3136 0.0034
33 1 6.2538 3.2930 0.0011
34 1 10.4430 2.6212 -1.2290
35 1 10.3829 1.3514 0.0168
36 1 13.5246 0.6834 -1.7850
37 1 8.2371 2.7509 -2.7166
38 1 6.7824 2.6090 -1.7008
39 1 6.0875 -0.9972 0.0030
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000266772425.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:42
Heat of formation + Delta-G solvation = -169.619664 kcal
Electronic energy + Delta-G solvation = -30753.706466 eV
Core-core repulsion = 25861.292975 eV
Total energy + Delta-G solvation = -4892.413491 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.109 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-50.08654 -47.63707 -47.44624 -41.04343 -39.70187 -38.53499 -35.64159 -34.98155
-33.32144 -32.52154 -31.76168 -29.48786 -28.01267 -27.02534 -24.86865 -24.06721
-23.38031 -22.76483 -21.10996 -19.86461 -18.80855 -18.49775 -18.30933 -17.76917
-17.16111 -16.80235 -16.26638 -15.91567 -15.72349 -15.60923 -15.25041 -14.78073
-14.54591 -14.37898 -14.31022 -14.23824 -13.99536 -13.89913 -13.84190 -13.61828
-13.44182 -13.05184 -12.94032 -12.61023 -12.56100 -12.49085 -12.19895 -12.02385
-11.39035 -11.06828 -10.76099 -10.64248 -10.35038 -10.15403 -10.03157 -9.86411
-9.57742 -9.43419 -9.25136 -8.57716 -8.22623 -6.19334 -4.26008 0.18633
0.92153 2.31494 2.67798 2.81061 3.02338 3.21750 3.24642 3.30198
3.33850 3.62272 3.83174 3.91726 4.06041 4.19927 4.31882 4.50940
4.57191 4.60291 4.77168 4.87880 4.95435 5.03850 5.16461 5.17077
5.41185 5.43538 5.49173 5.67290 5.74610 6.04131 6.22793 6.64410
7.04894 7.07625 7.24091 7.45235 7.73810 7.82653 7.86634 8.00436
8.42311 8.77540 9.39809 10.89117
Molecular weight = 345.11amu
Principal moments of inertia in cm(-1)
A = 0.012438 B = 0.003466 C = 0.002930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2250.633759 B = 8077.178722 C = 9555.029644
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.717 5.717
3 C 0.573 3.427
4 O -0.531 6.531
5 C 0.083 3.917
6 C -0.111 4.111
7 C -0.080 4.080
8 C -0.145 4.145
9 C 0.560 3.440
10 O -0.504 6.504
11 N -0.585 5.585
12 C 0.234 3.766
13 C -0.537 4.537
14 H 0.061 0.939
15 C 0.065 3.935
16 N -0.888 5.888
17 Si 0.901 3.099
18 H -0.273 1.273
19 H -0.282 1.282
20 H -0.282 1.282
21 C 0.058 3.942
22 C 0.430 3.570
23 F -0.166 7.166
24 F -0.183 7.183
25 F -0.179 7.179
26 C 0.150 3.850
27 N -0.460 5.460
28 H 0.062 0.938
29 H 0.062 0.938
30 H 0.078 0.922
31 H 0.414 0.586
32 H 0.155 0.845
33 H 0.158 0.842
34 H 0.050 0.950
35 H 0.054 0.946
36 H 0.265 0.735
37 H 0.130 0.870
38 H 0.118 0.882
39 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.691 2.297 0.554 18.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.368 5.368
3 C 0.358 3.642
4 O -0.407 6.407
5 C -0.055 4.055
6 C -0.132 4.132
7 C -0.106 4.106
8 C -0.151 4.151
9 C 0.345 3.655
10 O -0.379 6.379
11 N -0.316 5.316
12 C 0.117 3.883
13 C -0.576 4.576
14 H 0.079 0.921
15 C -0.138 4.138
16 N -0.526 5.526
17 Si 0.728 3.272
18 H -0.197 1.197
19 H -0.208 1.208
20 H -0.208 1.208
21 C -0.069 4.069
22 C 0.374 3.626
23 F -0.148 7.148
24 F -0.165 7.165
25 F -0.161 7.161
26 C -0.010 4.010
27 N -0.171 5.171
28 H 0.080 0.920
29 H 0.081 0.919
30 H 0.097 0.903
31 H 0.250 0.750
32 H 0.172 0.828
33 H 0.175 0.825
34 H 0.068 0.932
35 H 0.072 0.928
36 H 0.075 0.925
37 H 0.148 0.852
38 H 0.136 0.864
39 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges -19.110 1.898 1.019 19.232
hybrid contribution 1.121 -0.010 -0.649 1.296
sum -17.989 1.888 0.370 18.092
Atomic orbital electron populations
1.21610 0.79066 1.02580 1.02515 1.45632 1.07805 1.09159 1.74210
1.17920 0.85743 0.84057 0.76469 1.90786 1.68838 1.31290 1.49774
1.21203 0.94103 0.89978 1.00239 1.22053 0.94006 0.99558 0.97560
1.22570 0.94688 0.98985 0.94352 1.21507 0.96174 0.95408 1.01966
1.17970 0.85295 0.81066 0.81155 1.90821 1.70696 1.38510 1.37869
1.48125 1.11231 1.34848 1.37362 1.19722 0.70485 0.98591 0.99508
1.21370 0.92392 1.22665 1.21158 0.92057 1.24930 0.96029 0.96397
0.96476 1.69938 0.99850 1.41943 1.40886 0.86403 0.78475 0.81265
0.81052 1.19709 1.20840 1.20754 1.22910 1.01918 0.83448 0.98671
1.21540 0.74945 0.90352 0.75783 1.93245 1.32645 1.93718 1.95153
1.93182 1.74743 1.69679 1.78905 1.93011 1.91256 1.96803 1.34988
1.22890 0.87895 0.98240 0.91965 1.67574 1.10202 1.28032 1.11285
0.91968 0.91946 0.90314 0.74982 0.82778 0.82528 0.93212 0.92821
0.92482 0.85189 0.86417 0.80737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.58 10.70 59.85 0.64 1.22 16
2 N -0.72 -6.50 5.70 -67.89 -0.39 -6.89 16
3 C 0.57 6.92 7.82 -12.11 -0.09 6.82 16
4 O -0.53 -7.68 16.31 5.38 0.09 -7.59 16
5 C 0.08 1.02 6.75 -82.93 -0.56 0.46 16
6 C -0.11 -1.31 9.62 -39.11 -0.38 -1.69 16
7 C -0.08 -1.01 7.47 -38.90 -0.29 -1.30 16
8 C -0.14 -2.14 5.09 -104.73 -0.53 -2.67 16
9 C 0.56 10.60 7.28 -12.26 -0.09 10.51 16
10 O -0.50 -11.52 16.57 5.34 0.09 -11.43 16
11 N -0.58 -11.15 2.29 -176.11 -0.40 -11.55 16
12 C 0.23 5.63 5.11 -5.19 -0.03 5.60 16
13 C -0.54 -14.00 9.39 -34.44 -0.32 -14.32 16
14 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16
15 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16
16 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16
17 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16
18 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16
19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
21 C 0.06 0.84 5.10 -4.04 -0.02 0.82 16
22 C 0.43 6.20 2.92 37.16 0.11 6.30 16
23 F -0.17 -2.84 15.32 2.25 0.03 -2.80 16
24 F -0.18 -2.32 17.32 2.25 0.04 -2.29 16
25 F -0.18 -2.63 14.41 2.25 0.03 -2.60 16
26 C 0.15 2.01 10.87 -17.17 -0.19 1.83 16
27 N -0.46 -5.67 9.52 -9.48 -0.09 -5.76 16
28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16
30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16
31 H 0.41 3.22 8.15 -40.82 -0.33 2.88 16
32 H 0.15 1.61 7.63 -52.49 -0.40 1.21 16
33 H 0.16 1.92 3.40 -52.48 -0.18 1.74 16
34 H 0.05 1.22 6.15 -51.93 -0.32 0.90 16
35 H 0.05 1.47 7.35 -51.93 -0.38 1.09 16
36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16
37 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16
38 H 0.12 1.40 4.65 -51.93 -0.24 1.16 16
39 H 0.18 2.19 8.06 -52.49 -0.42 1.76 16
LS Contribution 349.22 15.07 5.26 5.26
Total: -1.00 -32.04 349.22 -4.98 -37.02
By element:
Atomic # 1 Polarization: 5.67 SS G_CDS: -3.51 Total: 2.15 kcal
Atomic # 6 Polarization: 17.08 SS G_CDS: -1.85 Total: 15.24 kcal
Atomic # 7 Polarization: -48.41 SS G_CDS: -0.14 Total: -48.56 kcal
Atomic # 8 Polarization: -19.20 SS G_CDS: 0.18 Total: -19.02 kcal
Atomic # 9 Polarization: -7.79 SS G_CDS: 0.11 Total: -7.69 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -32.04 -4.98 -37.02 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000266772425.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -132.598 kcal
(2) G-P(sol) polarization free energy of solvation -32.040 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.639 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.981 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) -169.620 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds