Wall clock time and date at job start Wed Apr 1 2020 03:09:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34768 * 120.00252 * 2 1
4 4 O 1.21488 * 120.00296 * 359.97438 * 3 2 1
5 5 C 1.48339 * 120.00149 * 179.97438 * 3 2 1
6 6 C 1.39299 * 119.57558 * 179.97438 * 5 3 2
7 7 C 1.38449 * 119.18996 * 179.97438 * 6 5 3
8 8 C 1.39860 * 118.36356 * 0.02562 * 7 6 5
9 9 C 1.48001 * 120.46725 * 179.97438 * 8 7 6
10 10 O 1.21533 * 119.99995 * 132.59811 * 9 8 7
11 11 N 1.34774 * 120.00094 * 312.60417 * 9 8 7
12 12 C 1.46503 * 120.00149 * 186.03769 * 11 9 8
13 13 C 1.50696 * 109.47274 * 89.99564 * 12 11 9
14 14 H 1.08004 * 120.00045 * 359.97438 * 13 12 11
15 15 C 1.37881 * 120.00155 * 179.97438 * 13 12 11
16 16 N 1.31517 * 119.99674 * 0.02562 * 15 13 12
17 17 Si 1.86800 * 120.00022 * 179.97438 * 15 13 12
18 18 H 1.48492 * 109.47256 * 0.02562 * 17 15 13
19 19 H 1.48506 * 109.46780 * 120.00279 * 17 15 13
20 20 H 1.48497 * 109.47339 * 239.99847 * 17 15 13
21 21 C 1.46504 * 119.99817 * 6.03172 * 11 9 8
22 22 C 1.53002 * 109.46914 * 104.59675 * 21 11 9
23 23 F 1.39891 * 109.47167 * 67.41366 * 22 21 11
24 24 F 1.39899 * 109.46955 * 187.41686 * 22 21 11
25 25 F 1.39902 * 109.46841 * 307.41027 * 22 21 11
26 26 C 1.39733 * 119.07003 * 359.97438 * 8 7 6
27 27 N 1.31412 * 120.72054 * 0.02562 * 26 8 7
28 28 H 1.08994 * 109.47428 * 300.00543 * 1 2 3
29 29 H 1.09008 * 109.46915 * 60.00219 * 1 2 3
30 30 H 1.08997 * 109.47394 * 179.97438 * 1 2 3
31 31 H 0.97009 * 119.99732 * 179.97438 * 2 1 3
32 32 H 1.07999 * 120.40273 * 0.25926 * 6 5 3
33 33 H 1.08004 * 120.81471 * 180.02562 * 7 6 5
34 34 H 1.08997 * 109.47201 * 209.99858 * 12 11 9
35 35 H 1.09000 * 109.46742 * 329.99446 * 12 11 9
36 36 H 0.96996 * 119.99757 * 179.97438 * 16 15 13
37 37 H 1.09002 * 109.47092 * 224.59596 * 21 11 9
38 38 H 1.08998 * 109.47214 * 344.59626 * 21 11 9
39 39 H 1.08002 * 119.63569 * 179.97438 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 1.5315 2.2193 -0.0005
5 6 3.6223 1.1671 0.0006
6 6 4.3098 2.3785 0.0000
7 6 5.6943 2.3692 0.0011
8 6 6.3504 1.1340 0.0022
9 6 7.8290 1.0697 0.0028
10 8 8.4048 0.3321 0.7783
11 7 8.5369 1.8292 -0.8565
12 6 9.9903 1.6700 -0.9488
13 6 10.3168 0.6319 -1.9912
14 1 9.5212 0.1396 -2.5308
15 6 11.6312 0.3106 -2.2562
16 7 12.6000 0.9098 -1.5988
17 14 12.0358 -0.9768 -3.5479
18 1 10.7771 -1.4978 -4.1388
19 1 12.8663 -0.3631 -4.6151
20 1 12.7859 -2.0924 -2.9170
21 6 7.8529 2.8140 -1.6985
22 6 8.1021 4.2186 -1.1454
23 9 9.4533 4.5470 -1.2983
24 9 7.3159 5.1411 -1.8441
25 9 7.7647 4.2519 0.2119
26 6 5.5903 -0.0385 0.0026
27 7 4.2772 0.0127 0.0016
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0276 -0.0005
31 1 1.9500 -0.8401 0.0004
32 1 3.7695 3.3136 0.0034
33 1 6.2538 3.2930 0.0011
34 1 10.4430 2.6212 -1.2290
35 1 10.3829 1.3514 0.0168
36 1 13.5246 0.6834 -1.7850
37 1 8.2371 2.7509 -2.7166
38 1 6.7824 2.6090 -1.7008
39 1 6.0875 -0.9972 0.0030
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000266772425.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:41
Heat of formation + Delta-G solvation = -191.808236 kcal
Electronic energy + Delta-G solvation = -30754.668635 eV
Core-core repulsion = 25861.292975 eV
Total energy + Delta-G solvation = -4893.375660 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.109 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-51.28713 -48.82591 -48.67178 -42.15080 -40.90090 -39.71891 -37.20662 -35.81055
-35.02770 -33.88099 -32.83678 -30.96951 -29.35057 -28.19888 -26.06462 -25.32040
-24.61145 -24.25112 -22.03701 -21.26485 -19.84006 -19.70683 -19.42842 -19.17276
-18.53354 -18.18703 -17.78128 -17.33122 -16.64686 -16.55661 -16.43630 -16.29508
-15.77676 -15.64967 -15.61661 -15.40957 -15.18868 -14.99060 -14.94452 -14.84722
-14.77400 -14.31199 -14.07818 -13.81749 -13.75150 -13.66733 -13.32534 -13.21984
-13.08053 -12.88397 -12.59832 -12.23719 -11.76935 -11.63170 -11.37085 -11.11917
-10.74403 -10.64044 -10.51668 -10.15768 -9.90112 -8.23491 -6.37670 -0.88477
-0.09313 1.16333 1.41115 1.42811 1.52723 1.53055 1.62838 1.92860
2.00087 2.40118 2.57664 2.70596 2.80243 2.87508 3.01967 3.10314
3.35317 3.53532 3.58464 3.75604 3.81498 3.94564 4.24296 4.43093
4.53586 4.64133 4.67042 4.70474 4.87137 4.95533 5.16173 5.21199
5.30664 5.32298 5.71244 5.98910 6.17559 6.24766 6.52031 6.69684
6.93868 7.01805 7.33104 8.85177
Molecular weight = 345.11amu
Principal moments of inertia in cm(-1)
A = 0.012438 B = 0.003466 C = 0.002930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2250.633759 B = 8077.178722 C = 9555.029644
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -0.705 5.705
3 C 0.569 3.431
4 O -0.558 6.558
5 C 0.085 3.915
6 C -0.104 4.104
7 C -0.068 4.068
8 C -0.157 4.157
9 C 0.560 3.440
10 O -0.555 6.555
11 N -0.590 5.590
12 C 0.250 3.750
13 C -0.545 4.545
14 H 0.065 0.935
15 C 0.011 3.989
16 N -0.926 5.926
17 Si 0.968 3.032
18 H -0.262 1.262
19 H -0.274 1.274
20 H -0.284 1.284
21 C 0.057 3.943
22 C 0.435 3.565
23 F -0.184 7.184
24 F -0.167 7.167
25 F -0.181 7.181
26 C 0.153 3.847
27 N -0.451 5.451
28 H 0.058 0.942
29 H 0.059 0.941
30 H 0.112 0.888
31 H 0.422 0.578
32 H 0.172 0.828
33 H 0.162 0.838
34 H 0.042 0.958
35 H 0.010 0.990
36 H 0.267 0.733
37 H 0.141 0.859
38 H 0.149 0.851
39 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.160 1.860 -0.718 21.254
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.355 5.355
3 C 0.354 3.646
4 O -0.437 6.437
5 C -0.054 4.054
6 C -0.124 4.124
7 C -0.094 4.094
8 C -0.162 4.162
9 C 0.348 3.652
10 O -0.433 6.433
11 N -0.320 5.320
12 C 0.131 3.869
13 C -0.584 4.584
14 H 0.083 0.917
15 C -0.188 4.188
16 N -0.565 5.565
17 Si 0.792 3.208
18 H -0.185 1.185
19 H -0.200 1.200
20 H -0.210 1.210
21 C -0.069 4.069
22 C 0.379 3.621
23 F -0.166 7.166
24 F -0.149 7.149
25 F -0.162 7.162
26 C -0.007 4.007
27 N -0.162 5.162
28 H 0.077 0.923
29 H 0.078 0.922
30 H 0.130 0.870
31 H 0.259 0.741
32 H 0.190 0.810
33 H 0.179 0.821
34 H 0.060 0.940
35 H 0.028 0.972
36 H 0.076 0.924
37 H 0.159 0.841
38 H 0.167 0.833
39 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -21.632 1.457 -0.273 21.683
hybrid contribution 1.752 0.149 -0.209 1.771
sum -19.879 1.606 -0.483 19.950
Atomic orbital electron populations
1.21831 0.77400 1.04768 1.02209 1.45697 1.08949 1.08583 1.72313
1.17911 0.85510 0.84516 0.76683 1.90779 1.69125 1.32286 1.51464
1.21470 0.94632 0.90132 0.99118 1.22206 0.93379 1.00234 0.96621
1.22535 0.95037 0.98179 0.93662 1.21110 0.93254 0.96949 1.04931
1.18531 0.86977 0.79793 0.79910 1.90786 1.72153 1.40547 1.39773
1.47942 1.09742 1.36056 1.38227 1.19160 0.73519 0.97581 0.96670
1.21688 0.92634 1.22855 1.21192 0.91683 1.25822 0.96022 0.98423
0.98564 1.70061 1.00252 1.43605 1.42600 0.85360 0.78519 0.78415
0.78479 1.18543 1.19977 1.21013 1.23181 1.03287 0.82184 0.98246
1.21403 0.74321 0.90516 0.75812 1.93214 1.34245 1.93855 1.95252
1.93216 1.74094 1.69065 1.78493 1.93014 1.91179 1.96830 1.35189
1.22956 0.88181 0.98054 0.91546 1.67632 1.09371 1.28020 1.11191
0.92295 0.92188 0.86966 0.74123 0.81025 0.82061 0.93969 0.97206
0.92371 0.84098 0.83328 0.80275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.87 10.70 127.77 1.37 2.23 16
2 N -0.70 -10.97 5.70 -487.01 -2.78 -13.75 16
3 C 0.57 12.44 7.82 86.93 0.68 13.12 16
4 O -0.56 -15.03 16.31 -3.68 -0.06 -15.09 16
5 C 0.09 1.89 6.75 41.96 0.28 2.17 16
6 C -0.10 -2.18 9.62 22.58 0.22 -1.97 16
7 C -0.07 -1.60 7.47 22.71 0.17 -1.43 16
8 C -0.16 -4.47 5.09 -19.93 -0.10 -4.57 16
9 C 0.56 21.51 7.28 86.83 0.63 22.14 16
10 O -0.55 -26.36 16.57 -3.82 -0.06 -26.42 16
11 N -0.59 -22.72 2.29 -829.39 -1.90 -24.62 16
12 C 0.25 12.46 5.11 85.63 0.44 12.89 16
13 C -0.55 -28.81 9.39 25.60 0.24 -28.57 16
14 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16
15 C 0.01 0.62 5.46 84.66 0.46 1.08 16
16 N -0.93 -53.58 13.29 21.45 0.28 -53.29 16
17 Si 0.97 42.29 29.54 68.60 2.03 44.32 16
18 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16
19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
21 C 0.06 1.58 5.10 86.38 0.44 2.02 16
22 C 0.44 12.11 2.92 71.98 0.21 12.32 16
23 F -0.18 -6.30 15.32 44.97 0.69 -5.61 16
24 F -0.17 -3.88 17.32 44.97 0.78 -3.10 16
25 F -0.18 -5.16 14.41 44.97 0.65 -4.51 16
26 C 0.15 3.89 10.87 85.12 0.93 4.82 16
27 N -0.45 -10.17 9.52 -183.90 -1.75 -11.92 16
28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16
30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16
31 H 0.42 5.36 8.15 -92.70 -0.76 4.61 16
32 H 0.17 3.07 7.63 -2.91 -0.02 3.05 16
33 H 0.16 3.63 3.40 -2.91 -0.01 3.62 16
34 H 0.04 2.15 6.15 -2.39 -0.01 2.13 16
35 H 0.01 0.57 7.35 -2.39 -0.02 0.55 16
36 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16
37 H 0.14 3.65 8.14 -2.39 -0.02 3.63 16
38 H 0.15 3.20 4.65 -2.39 -0.01 3.18 16
39 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16
Total: -1.00 -70.74 349.22 4.24 -66.50
By element:
Atomic # 1 Polarization: 10.85 SS G_CDS: 0.40 Total: 11.25 kcal
Atomic # 6 Polarization: 30.29 SS G_CDS: 5.96 Total: 36.25 kcal
Atomic # 7 Polarization: -97.44 SS G_CDS: -6.14 Total: -103.58 kcal
Atomic # 8 Polarization: -41.38 SS G_CDS: -0.12 Total: -41.51 kcal
Atomic # 9 Polarization: -15.34 SS G_CDS: 2.12 Total: -13.23 kcal
Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal
Total: -70.74 4.24 -66.50 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000266772425.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -125.305 kcal
(2) G-P(sol) polarization free energy of solvation -70.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.048 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) -191.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds