Wall clock time and date at job start Wed Apr 1 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46762 * 252.17348 * 3 2 1 5 5 C 1.37099 * 119.99492 * 269.01881 * 4 3 2 6 6 H 1.08002 * 120.00013 * 188.08003 * 5 4 3 7 7 C 1.38946 * 120.00577 * 8.08376 * 5 4 3 8 8 N 1.31417 * 119.99974 * 30.23291 * 7 5 4 9 9 Si 1.86795 * 120.00440 * 210.23859 * 7 5 4 10 10 H 1.48505 * 109.46921 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47418 * 119.99345 * 9 7 5 12 12 H 1.48499 * 109.47274 * 239.99886 * 9 7 5 13 13 C 1.34771 * 120.00256 * 89.02014 * 4 3 2 14 14 O 1.21293 * 119.99992 * 2.82743 * 13 4 3 15 15 C 1.50696 * 120.00010 * 182.82152 * 13 4 3 16 16 H 1.08999 * 109.47721 * 306.02774 * 15 13 4 17 17 C 1.52999 * 109.47133 * 66.03202 * 15 13 4 18 18 N 1.46503 * 109.46971 * 186.03134 * 15 13 4 19 19 C 1.34783 * 119.99747 * 155.00273 * 18 15 13 20 20 O 1.21553 * 120.00098 * 359.97438 * 19 18 15 21 21 C 1.47847 * 119.99574 * 179.97438 * 19 18 15 22 22 C 1.39599 * 120.14771 * 359.72283 * 21 19 18 23 23 C 1.37933 * 119.85255 * 179.76743 * 22 21 19 24 24 C 1.38382 * 120.14748 * 0.50907 * 23 22 21 25 25 C 1.38342 * 120.28788 * 359.74373 * 24 23 22 26 26 N 1.48014 * 119.92440 * 179.97438 * 25 24 23 27 27 O 1.21796 * 120.00046 * 180.02562 * 26 25 24 28 28 O 1.21799 * 120.00356 * 0.02865 * 26 25 24 29 29 C 1.37972 * 120.14977 * 359.97438 * 25 24 23 30 30 H 4.40643 * 5.51444 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.47054 * 132.17711 * 3 2 1 32 32 H 1.09001 * 109.47321 * 12.16975 * 3 2 1 33 33 H 0.96990 * 119.99939 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47251 * 55.23626 * 17 15 13 35 35 H 1.09001 * 109.47316 * 175.23922 * 17 15 13 36 36 H 1.09000 * 109.47417 * 295.23655 * 17 15 13 37 37 H 0.96999 * 120.00450 * 334.99746 * 18 15 13 38 38 H 1.08003 * 120.06736 * 0.02562 * 22 21 19 39 39 H 1.08005 * 119.92688 * 180.25583 * 23 22 21 40 40 H 1.07998 * 119.85347 * 179.76647 * 24 23 22 41 41 H 1.07998 * 120.07826 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4237 1.3150 5 6 3.3811 1.7498 1.5603 6 1 3.8622 2.0484 2.4799 7 6 3.0124 2.7097 0.6258 8 7 1.9706 2.5064 -0.1490 9 14 3.9977 4.2891 0.4706 10 1 5.1146 4.2739 1.4492 11 1 4.5470 4.3967 -0.9049 12 1 3.1153 5.4519 0.7436 13 6 3.3403 -0.4905 2.2834 14 8 3.1710 -1.6689 2.0510 15 6 3.7813 -0.0489 3.6551 16 1 4.6777 0.5652 3.5684 17 6 2.6657 0.7669 4.3114 18 7 4.0736 -1.2261 4.4767 19 6 4.9304 -1.1290 5.5125 20 8 5.4610 -0.0649 5.7648 21 6 5.2249 -2.3170 6.3420 22 6 4.6128 -3.5392 6.0586 23 6 4.8956 -4.6447 6.8334 24 6 5.7758 -4.5417 7.8962 25 6 6.3817 -3.3322 8.1857 26 7 7.3215 -3.2311 9.3247 27 8 7.8554 -2.1668 9.5811 28 8 7.5610 -4.2121 10.0057 29 6 6.1120 -2.2201 7.4150 30 1 -1.0501 0.0001 -0.0002 31 1 3.0090 0.6908 -0.7616 32 1 3.0099 -1.0037 -0.2166 33 1 1.7134 3.1764 -0.8015 34 1 1.7458 0.1822 4.3215 35 1 2.9501 1.0146 5.3341 36 1 2.5063 1.6852 3.7462 37 1 3.6504 -2.0754 4.2752 38 1 3.9225 -3.6198 5.2318 39 1 4.4259 -5.5919 6.6127 40 1 5.9909 -5.4095 8.5021 41 1 6.5860 -1.2765 7.6417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282127529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:22 Heat of formation + Delta-G solvation = 30.305028 kcal Electronic energy + Delta-G solvation = -29168.285982 eV Core-core repulsion = 24826.398616 eV Total energy + Delta-G solvation = -4341.887366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -42.42103 -40.58046 -39.31102 -38.34128 -36.78607 -35.58915 -34.59434 -32.78892 -32.10124 -31.97906 -31.64142 -29.97910 -26.83170 -26.61803 -25.26917 -24.76706 -22.89171 -22.82624 -20.84337 -19.71428 -19.34804 -18.85902 -18.31279 -17.75978 -17.41636 -16.94417 -16.77177 -15.96256 -15.83122 -15.18757 -14.97621 -14.78030 -14.47160 -14.43076 -14.31665 -13.82186 -13.40919 -13.16159 -12.81770 -12.69540 -12.27524 -12.18237 -12.03068 -11.83563 -11.77978 -11.54185 -11.43223 -11.35028 -11.21306 -11.01286 -10.61968 -10.51869 -10.08471 -10.08050 -9.79875 -9.54154 -9.44681 -9.06266 -8.90911 -8.59974 -8.20976 -6.65182 -4.09241 -0.49645 0.22969 1.00090 1.09568 2.42368 2.94938 2.97365 3.13704 3.18290 3.27481 3.45867 3.76052 3.99397 3.99832 4.08592 4.10389 4.32492 4.35488 4.44384 4.70147 4.75848 4.80400 5.12499 5.26437 5.47401 5.49539 5.51990 5.66199 5.73491 5.75648 5.78622 6.13258 6.15795 6.27253 6.47154 6.56223 6.66835 6.76183 6.99128 7.21836 7.35599 7.39579 7.54896 8.05356 8.15930 8.78798 8.81156 9.15249 9.54994 10.33903 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.002501 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.058645 B =11192.530327 C =12394.541852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.105 4.105 3 C 0.237 3.763 4 N -0.420 5.420 5 C -0.361 4.361 6 H 0.111 0.889 7 C 0.048 3.952 8 N -0.831 5.831 9 Si 0.908 3.092 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.446 3.554 14 O -0.611 6.611 15 C 0.144 3.856 16 H 0.108 0.892 17 C -0.156 4.156 18 N -0.695 5.695 19 C 0.556 3.444 20 O -0.530 6.530 21 C -0.121 4.121 22 C -0.035 4.035 23 C -0.121 4.121 24 C -0.037 4.037 25 C -0.054 4.054 26 N 0.029 4.971 27 O -0.153 6.153 28 O -0.161 6.161 29 C 0.000 4.000 30 H 0.199 0.801 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.273 0.727 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.406 0.594 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -10.536 8.967 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.107 4.107 3 C 0.115 3.885 4 N -0.135 5.135 5 C -0.488 4.488 6 H 0.128 0.872 7 C -0.161 4.161 8 N -0.465 5.465 9 Si 0.734 3.266 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.234 3.766 14 O -0.499 6.499 15 C 0.037 3.963 16 H 0.125 0.875 17 C -0.214 4.214 18 N -0.348 5.348 19 C 0.341 3.659 20 O -0.407 6.407 21 C -0.125 4.125 22 C -0.054 4.054 23 C -0.139 4.139 24 C -0.057 4.057 25 C -0.136 4.136 26 N 0.549 4.451 27 O -0.370 6.370 28 O -0.376 6.376 29 C -0.020 4.020 30 H 0.216 0.784 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.244 0.756 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.093 -10.249 8.249 13.322 hybrid contribution 0.063 0.657 -0.011 0.660 sum 2.156 -9.592 8.238 12.826 Atomic orbital electron populations 1.24218 0.95328 1.06705 1.02047 1.23032 0.94219 0.95010 0.98420 1.18144 0.84364 0.99228 0.86750 1.43679 1.54083 1.06857 1.08929 1.19716 1.40498 0.80811 1.07739 0.87167 1.25223 0.94677 0.99624 0.96573 1.70238 1.18903 1.36027 1.21336 0.86178 0.80469 0.81147 0.78854 1.18773 1.20281 1.20664 1.19805 0.84911 0.86016 0.85835 1.90510 1.60123 1.17316 1.81984 1.20616 1.00671 0.86026 0.89021 0.87476 1.22102 0.96992 1.01756 1.00597 1.45753 1.44867 1.14571 1.29581 1.17841 0.79712 0.87475 0.80900 1.90823 1.51301 1.28658 1.69942 1.20036 0.99846 0.95136 0.97514 1.21980 0.94861 0.91244 0.97282 1.21209 0.98209 1.00051 0.94454 1.21270 0.92315 0.95982 0.96107 1.20997 1.01115 0.97765 0.93765 1.43558 0.99981 1.00403 1.01113 1.94586 1.51147 1.16840 1.74477 1.94528 1.66698 1.28451 1.47953 1.21115 0.92453 0.98471 0.89945 0.78431 0.87735 0.90853 0.91643 0.92903 0.92561 0.88476 0.75648 0.83073 0.82687 0.82512 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.52 19.25 29.55 0.57 -4.95 16 2 C -0.11 -2.39 11.59 -37.12 -0.43 -2.82 16 3 C 0.24 5.30 5.18 -6.82 -0.04 5.26 16 4 N -0.42 -9.53 2.59 -117.93 -0.30 -9.83 16 5 C -0.36 -8.24 7.84 -14.93 -0.12 -8.36 16 6 H 0.11 2.42 5.43 -52.49 -0.29 2.13 16 7 C 0.05 1.09 4.75 -17.47 -0.08 1.01 16 8 N -0.83 -19.72 9.55 55.50 0.53 -19.19 16 9 Si 0.91 17.98 29.65 -169.99 -5.04 12.94 16 10 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 C 0.45 9.58 7.03 -10.99 -0.08 9.50 16 14 O -0.61 -13.85 15.40 5.55 0.09 -13.77 16 15 C 0.14 2.65 2.14 -69.08 -0.15 2.51 16 16 H 0.11 2.09 6.78 -51.93 -0.35 1.74 16 17 C -0.16 -2.74 9.13 37.16 0.34 -2.40 16 18 N -0.70 -10.76 4.94 -55.88 -0.28 -11.03 16 19 C 0.56 8.31 7.74 -12.33 -0.10 8.22 16 20 O -0.53 -9.61 16.01 5.32 0.09 -9.53 16 21 C -0.12 -1.39 5.87 -104.96 -0.62 -2.00 16 22 C -0.03 -0.29 9.54 -39.19 -0.37 -0.66 16 23 C -0.12 -0.76 10.03 -39.64 -0.40 -1.16 16 24 C -0.04 -0.29 9.55 -39.49 -0.38 -0.67 16 25 C -0.05 -0.57 6.84 -80.01 -0.55 -1.12 16 26 N 0.03 0.37 4.45 33.93 0.15 0.52 16 27 O -0.15 -2.14 18.44 -29.46 -0.54 -2.68 16 28 O -0.16 -2.03 18.44 -29.46 -0.54 -2.57 16 29 C 0.00 0.00 9.10 -39.18 -0.36 -0.36 16 30 H 0.20 3.34 7.80 -54.09 -0.42 2.92 16 31 H 0.10 2.36 6.38 -51.93 -0.33 2.03 16 32 H 0.07 1.57 7.41 -51.93 -0.38 1.18 16 33 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.85 5.80 -51.93 -0.30 1.55 16 37 H 0.41 5.66 5.77 -40.82 -0.24 5.43 16 38 H 0.15 1.05 6.41 -52.48 -0.34 0.72 16 39 H 0.16 0.49 8.06 -52.48 -0.42 0.06 16 40 H 0.16 0.90 7.60 -52.49 -0.40 0.50 16 41 H 0.17 2.06 7.20 -52.49 -0.38 1.68 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -29.11 365.60 -6.92 -36.03 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -3.83 Total: 11.60 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.75 Total: 2.00 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.10 Total: -39.53 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.92 Total: -28.55 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.04 Total: 12.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.11 -6.92 -36.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282127529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.338 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds