Wall clock time and date at job start Wed Apr 1 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46762 * 252.17348 * 3 2 1 5 5 C 1.37099 * 119.99492 * 269.01881 * 4 3 2 6 6 H 1.08002 * 120.00013 * 188.08003 * 5 4 3 7 7 C 1.38946 * 120.00577 * 8.08376 * 5 4 3 8 8 N 1.31417 * 119.99974 * 30.23291 * 7 5 4 9 9 Si 1.86795 * 120.00440 * 210.23859 * 7 5 4 10 10 H 1.48505 * 109.46921 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47418 * 119.99345 * 9 7 5 12 12 H 1.48499 * 109.47274 * 239.99886 * 9 7 5 13 13 C 1.34771 * 120.00256 * 89.02014 * 4 3 2 14 14 O 1.21293 * 119.99992 * 2.82743 * 13 4 3 15 15 C 1.50696 * 120.00010 * 182.82152 * 13 4 3 16 16 H 1.08999 * 109.47721 * 306.02774 * 15 13 4 17 17 C 1.52999 * 109.47133 * 66.03202 * 15 13 4 18 18 N 1.46503 * 109.46971 * 186.03134 * 15 13 4 19 19 C 1.34783 * 119.99747 * 155.00273 * 18 15 13 20 20 O 1.21553 * 120.00098 * 359.97438 * 19 18 15 21 21 C 1.47847 * 119.99574 * 179.97438 * 19 18 15 22 22 C 1.39599 * 120.14771 * 359.72283 * 21 19 18 23 23 C 1.37933 * 119.85255 * 179.76743 * 22 21 19 24 24 C 1.38382 * 120.14748 * 0.50907 * 23 22 21 25 25 C 1.38342 * 120.28788 * 359.74373 * 24 23 22 26 26 N 1.48014 * 119.92440 * 179.97438 * 25 24 23 27 27 O 1.21796 * 120.00046 * 180.02562 * 26 25 24 28 28 O 1.21799 * 120.00356 * 0.02865 * 26 25 24 29 29 C 1.37972 * 120.14977 * 359.97438 * 25 24 23 30 30 H 4.40643 * 5.51444 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.47054 * 132.17711 * 3 2 1 32 32 H 1.09001 * 109.47321 * 12.16975 * 3 2 1 33 33 H 0.96990 * 119.99939 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47251 * 55.23626 * 17 15 13 35 35 H 1.09001 * 109.47316 * 175.23922 * 17 15 13 36 36 H 1.09000 * 109.47417 * 295.23655 * 17 15 13 37 37 H 0.96999 * 120.00450 * 334.99746 * 18 15 13 38 38 H 1.08003 * 120.06736 * 0.02562 * 22 21 19 39 39 H 1.08005 * 119.92688 * 180.25583 * 23 22 21 40 40 H 1.07998 * 119.85347 * 179.76647 * 24 23 22 41 41 H 1.07998 * 120.07826 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4237 1.3150 5 6 3.3811 1.7498 1.5603 6 1 3.8622 2.0484 2.4799 7 6 3.0124 2.7097 0.6258 8 7 1.9706 2.5064 -0.1490 9 14 3.9977 4.2891 0.4706 10 1 5.1146 4.2739 1.4492 11 1 4.5470 4.3967 -0.9049 12 1 3.1153 5.4519 0.7436 13 6 3.3403 -0.4905 2.2834 14 8 3.1710 -1.6689 2.0510 15 6 3.7813 -0.0489 3.6551 16 1 4.6777 0.5652 3.5684 17 6 2.6657 0.7669 4.3114 18 7 4.0736 -1.2261 4.4767 19 6 4.9304 -1.1290 5.5125 20 8 5.4610 -0.0649 5.7648 21 6 5.2249 -2.3170 6.3420 22 6 4.6128 -3.5392 6.0586 23 6 4.8956 -4.6447 6.8334 24 6 5.7758 -4.5417 7.8962 25 6 6.3817 -3.3322 8.1857 26 7 7.3215 -3.2311 9.3247 27 8 7.8554 -2.1668 9.5811 28 8 7.5610 -4.2121 10.0057 29 6 6.1120 -2.2201 7.4150 30 1 -1.0501 0.0001 -0.0002 31 1 3.0090 0.6908 -0.7616 32 1 3.0099 -1.0037 -0.2166 33 1 1.7134 3.1764 -0.8015 34 1 1.7458 0.1822 4.3215 35 1 2.9501 1.0146 5.3341 36 1 2.5063 1.6852 3.7462 37 1 3.6504 -2.0754 4.2752 38 1 3.9225 -3.6198 5.2318 39 1 4.4259 -5.5919 6.6127 40 1 5.9909 -5.4095 8.5021 41 1 6.5860 -1.2765 7.6417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282127529.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:21 Heat of formation + Delta-G solvation = 14.248252 kcal Electronic energy + Delta-G solvation = -29168.982256 eV Core-core repulsion = 24826.398616 eV Total energy + Delta-G solvation = -4342.583640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.35082 -41.73075 -40.69820 -39.52715 -37.75692 -37.24504 -36.07318 -33.92718 -33.75945 -33.20113 -32.71544 -31.32643 -28.32625 -27.70678 -26.91875 -25.92736 -24.18869 -23.62908 -21.95673 -21.14937 -20.64887 -19.93819 -19.74965 -18.70236 -18.69668 -18.30588 -17.78753 -17.30177 -17.13106 -16.42989 -16.32069 -16.08333 -15.95558 -15.87876 -15.31351 -15.12793 -14.78999 -14.42269 -14.13033 -13.89688 -13.66058 -13.47098 -13.42567 -13.11914 -13.07713 -12.82110 -12.75488 -12.54194 -12.36528 -12.35570 -12.31899 -12.10952 -11.34807 -11.23702 -11.17583 -10.84360 -10.63051 -10.59702 -10.46702 -10.17452 -9.97355 -8.39560 -5.87808 -1.34912 -0.58607 0.16834 0.23421 1.34189 1.47784 1.50614 1.59978 1.69350 1.82935 2.13556 2.32229 2.35012 2.40226 2.97816 3.08148 3.21992 3.32205 3.53414 3.60561 3.76572 3.87809 3.98724 4.10020 4.21492 4.23961 4.45768 4.55361 4.64302 4.76917 4.80888 4.83985 4.86639 4.90209 5.04117 5.16862 5.26704 5.32914 5.38747 5.47230 5.63720 6.28226 6.35771 6.39509 6.95660 7.02899 7.13181 7.42622 7.81255 8.59850 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.002501 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.058645 B =11192.530327 C =12394.541852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.150 4.150 3 C 0.239 3.761 4 N -0.430 5.430 5 C -0.373 4.373 6 H 0.113 0.887 7 C 0.016 3.984 8 N -0.853 5.853 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.282 1.282 13 C 0.442 3.558 14 O -0.624 6.624 15 C 0.151 3.849 16 H 0.093 0.907 17 C -0.144 4.144 18 N -0.690 5.690 19 C 0.557 3.443 20 O -0.569 6.569 21 C -0.136 4.136 22 C -0.023 4.023 23 C -0.098 4.098 24 C -0.020 4.020 25 C -0.066 4.066 26 N 0.030 4.970 27 O -0.210 6.210 28 O -0.139 6.139 29 C -0.010 4.010 30 H 0.234 0.766 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.273 0.727 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.415 0.585 38 H 0.169 0.831 39 H 0.203 0.797 40 H 0.186 0.814 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 -12.920 9.426 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.152 4.152 3 C 0.117 3.883 4 N -0.146 5.146 5 C -0.499 4.499 6 H 0.131 0.869 7 C -0.191 4.191 8 N -0.488 5.488 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.232 3.768 14 O -0.513 6.513 15 C 0.044 3.956 16 H 0.111 0.889 17 C -0.202 4.202 18 N -0.343 5.343 19 C 0.345 3.655 20 O -0.450 6.450 21 C -0.140 4.140 22 C -0.042 4.042 23 C -0.115 4.115 24 C -0.039 4.039 25 C -0.149 4.149 26 N 0.547 4.453 27 O -0.414 6.414 28 O -0.363 6.363 29 C -0.031 4.031 30 H 0.251 0.749 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.254 0.746 38 H 0.187 0.813 39 H 0.220 0.780 40 H 0.203 0.797 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.080 -12.548 8.706 15.310 hybrid contribution 0.299 1.196 -0.152 1.242 sum 1.379 -11.352 8.553 14.280 Atomic orbital electron populations 1.25110 0.96310 1.04901 1.00255 1.23361 0.94943 0.96706 1.00144 1.18057 0.84801 0.98901 0.86580 1.43843 1.54356 1.07085 1.09324 1.19915 1.40685 0.81105 1.08180 0.86912 1.25842 0.95055 1.01897 0.96269 1.70308 1.19744 1.36870 1.21840 0.85278 0.79020 0.78006 0.78491 1.18798 1.20264 1.20842 1.20259 0.84276 0.85736 0.86574 1.90479 1.60620 1.17760 1.82490 1.20363 1.00167 0.87066 0.88050 0.88870 1.21969 0.96740 1.00833 1.00701 1.45615 1.45272 1.14025 1.29421 1.18331 0.78520 0.88153 0.80501 1.90800 1.52612 1.30609 1.70931 1.19674 1.01708 0.95023 0.97637 1.22251 0.93946 0.90340 0.97633 1.21707 0.96530 1.00909 0.92395 1.21749 0.90799 0.95255 0.96123 1.21097 1.01694 0.98790 0.93319 1.43840 1.00010 1.00020 1.01461 1.94603 1.53344 1.17465 1.75988 1.94481 1.65911 1.28096 1.47843 1.20932 0.93045 0.98345 0.90736 0.74924 0.88726 0.90732 0.91640 0.92653 0.91551 0.90076 0.74572 0.81344 0.77972 0.79661 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.99 19.25 74.32 1.43 -8.56 16 2 C -0.15 -6.79 11.59 31.13 0.36 -6.43 16 3 C 0.24 10.83 5.18 84.57 0.44 11.27 16 4 N -0.43 -19.77 2.59 -645.41 -1.67 -21.44 16 5 C -0.37 -17.21 7.84 84.04 0.66 -16.55 16 6 H 0.11 5.04 5.43 -2.91 -0.02 5.03 16 7 C 0.02 0.74 4.75 84.92 0.40 1.14 16 8 N -0.85 -40.64 9.55 21.66 0.21 -40.43 16 9 Si 0.97 37.14 29.65 68.60 2.03 39.18 16 10 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 11 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 12 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 13 C 0.44 19.09 7.03 87.66 0.62 19.70 16 14 O -0.62 -28.06 15.40 -3.07 -0.05 -28.10 16 15 C 0.15 5.64 2.14 44.24 0.09 5.74 16 16 H 0.09 3.75 6.78 -2.39 -0.02 3.74 16 17 C -0.14 -5.07 9.13 71.98 0.66 -4.42 16 18 N -0.69 -21.04 4.94 -448.97 -2.22 -23.25 16 19 C 0.56 16.76 7.74 86.79 0.67 17.44 16 20 O -0.57 -21.47 16.01 -3.88 -0.06 -21.54 16 21 C -0.14 -2.99 5.87 -20.09 -0.12 -3.11 16 22 C -0.02 -0.31 9.54 22.53 0.21 -0.09 16 23 C -0.10 -0.72 10.03 22.23 0.22 -0.50 16 24 C -0.02 -0.23 9.55 22.33 0.21 -0.01 16 25 C -0.07 -1.31 6.84 36.34 0.25 -1.07 16 26 N 0.03 0.76 4.45 -46.56 -0.21 0.55 16 27 O -0.21 -6.19 18.44 18.89 0.35 -5.85 16 28 O -0.14 -3.27 18.44 18.89 0.35 -2.93 16 29 C -0.01 -0.24 9.10 22.53 0.20 -0.04 16 30 H 0.23 7.23 7.80 -4.41 -0.03 7.19 16 31 H 0.09 4.39 6.38 -2.39 -0.02 4.38 16 32 H 0.07 3.25 7.41 -2.39 -0.02 3.23 16 33 H 0.27 12.42 8.31 -92.72 -0.77 11.65 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 3.13 5.80 -2.39 -0.01 3.11 16 37 H 0.41 10.99 5.77 -92.71 -0.54 10.46 16 38 H 0.17 1.68 6.41 -2.91 -0.02 1.66 16 39 H 0.20 -0.24 8.06 -2.91 -0.02 -0.26 16 40 H 0.19 1.11 7.60 -2.91 -0.02 1.09 16 41 H 0.15 3.95 7.20 -2.91 -0.02 3.93 16 Total: -1.00 -65.07 365.60 5.63 -59.44 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.58 Total: 29.87 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 6.32 Total: 14.51 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -3.89 Total: -84.58 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: 0.59 Total: -58.41 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.18 kcal Total: -65.07 5.63 -59.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282127529.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.691 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds