Wall clock time and date at job start Wed Apr 1 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46696 * 176.00299 * 3 2 1 5 5 C 1.37093 * 120.00113 * 85.63212 * 4 3 2 6 6 H 1.07999 * 120.00056 * 179.62427 * 5 4 3 7 7 C 1.38950 * 120.00004 * 359.62015 * 5 4 3 8 8 N 1.31413 * 120.00036 * 328.30531 * 7 5 4 9 9 Si 1.86801 * 120.00318 * 148.30718 * 7 5 4 10 10 H 1.48501 * 109.47088 * 59.99865 * 9 7 5 11 11 H 1.48492 * 109.47180 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47063 * 300.00211 * 9 7 5 13 13 C 1.34778 * 119.99825 * 265.62464 * 4 3 2 14 14 O 1.21289 * 120.00114 * 4.53649 * 13 4 3 15 15 C 1.50699 * 119.99802 * 184.53337 * 13 4 3 16 16 H 1.09007 * 109.47039 * 51.65553 * 15 13 4 17 17 C 1.53002 * 109.47295 * 291.65618 * 15 13 4 18 18 N 1.46502 * 109.47117 * 171.65288 * 15 13 4 19 19 C 1.34779 * 120.00182 * 204.99943 * 18 15 13 20 20 O 1.21551 * 119.99783 * 0.02562 * 19 18 15 21 21 C 1.47839 * 120.00210 * 179.97438 * 19 18 15 22 22 C 1.39596 * 120.14460 * 359.72953 * 21 19 18 23 23 C 1.37935 * 119.85268 * 179.76518 * 22 21 19 24 24 C 1.38378 * 120.14626 * 0.50634 * 23 22 21 25 25 C 1.38338 * 120.29049 * 359.74329 * 24 23 22 26 26 N 1.48015 * 119.92327 * 179.97438 * 25 24 23 27 27 O 1.21803 * 119.99407 * 180.02562 * 26 25 24 28 28 O 1.21794 * 120.00445 * 0.02562 * 26 25 24 29 29 C 1.37974 * 120.14884 * 0.02562 * 25 24 23 30 30 H 4.40637 * 5.51511 * 180.02562 * 4 1 2 31 31 H 1.08995 * 109.46769 * 56.00395 * 3 2 1 32 32 H 1.08992 * 109.47091 * 296.00211 * 3 2 1 33 33 H 0.97003 * 120.00450 * 180.02562 * 8 7 5 34 34 H 1.08990 * 109.46884 * 55.45649 * 17 15 13 35 35 H 1.08997 * 109.46798 * 175.46243 * 17 15 13 36 36 H 1.08999 * 109.46742 * 295.45627 * 17 15 13 37 37 H 0.96998 * 120.00169 * 25.00173 * 18 15 13 38 38 H 1.08007 * 120.07312 * 0.02562 * 22 21 19 39 39 H 1.08003 * 119.92433 * 180.25450 * 23 22 21 40 40 H 1.07998 * 119.85097 * 179.76515 * 24 23 22 41 41 H 1.07990 * 120.07688 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3788 -0.0963 5 6 3.2765 2.1361 1.0375 6 1 3.6417 3.1500 0.9671 7 6 2.9513 1.5993 2.2772 8 7 1.9893 0.7095 2.3760 9 14 3.8816 2.1423 3.8033 10 1 3.7135 3.6058 3.9909 11 1 3.3467 1.4271 4.9897 12 1 5.3236 1.8263 3.6427 13 6 3.4419 1.9019 -1.2995 14 8 3.2384 1.2618 -2.3094 15 6 4.0395 3.2824 -1.3901 16 1 4.9005 3.3500 -0.7250 17 6 2.9931 4.3193 -0.9766 18 7 4.4652 3.5408 -2.7679 19 6 5.4424 4.4356 -3.0147 20 8 5.9709 5.0278 -2.0941 21 6 5.8724 4.6960 -4.4050 22 6 5.2722 4.0126 -5.4640 23 6 5.6747 4.2638 -6.7592 24 6 6.6783 5.1831 -7.0092 25 6 7.2808 5.8599 -5.9639 26 7 8.3539 6.8411 -6.2405 27 8 8.8856 7.4373 -5.3211 28 8 8.7053 7.0522 -7.3874 29 6 6.8844 5.6215 -4.6640 30 1 -1.0502 -0.0003 0.0002 31 1 3.0096 -0.5738 -0.8520 32 1 3.0095 -0.4497 0.9236 33 1 1.7620 0.3350 3.2414 34 1 2.6176 4.0796 0.0181 35 1 3.4481 5.3097 -0.9644 36 1 2.1683 4.3071 -1.6891 37 1 4.0437 3.0680 -3.5025 38 1 4.4915 3.2920 -5.2700 39 1 5.2083 3.7388 -7.5798 40 1 6.9923 5.3733 -8.0249 41 1 7.3552 6.1508 -3.8489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282127531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:27 Heat of formation + Delta-G solvation = 34.133740 kcal Electronic energy + Delta-G solvation = -29152.811187 eV Core-core repulsion = 24811.089846 eV Total energy + Delta-G solvation = -4341.721341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.42300 -40.58499 -39.31871 -38.34499 -36.78840 -35.60265 -34.60488 -32.80089 -32.07082 -31.98537 -31.66405 -30.00382 -26.83595 -26.59143 -25.32775 -24.74874 -22.88562 -22.81780 -20.84197 -19.71169 -19.34145 -18.86228 -18.36981 -17.76184 -17.40947 -16.94518 -16.76832 -15.96450 -15.83975 -15.18569 -14.98446 -14.76395 -14.45618 -14.44041 -14.32622 -13.82667 -13.41740 -13.15692 -12.82570 -12.71731 -12.30364 -12.21549 -12.08700 -11.84736 -11.78225 -11.53997 -11.43460 -11.35251 -11.19221 -11.02492 -10.59708 -10.44603 -10.08450 -10.08016 -9.80200 -9.52498 -9.43406 -9.05830 -8.85832 -8.58668 -8.25063 -6.67165 -4.07314 -0.49923 0.22641 0.99808 1.09316 2.42002 2.95610 2.98704 3.12567 3.15692 3.27088 3.47270 3.75704 3.99169 3.99976 4.08587 4.12947 4.32192 4.35306 4.44120 4.67530 4.78087 4.80291 5.12242 5.26146 5.47355 5.51661 5.52245 5.64018 5.72295 5.74834 5.77940 6.12995 6.15408 6.24393 6.47205 6.54973 6.70683 6.72823 7.01455 7.22586 7.34815 7.39336 7.54421 8.05056 8.15437 8.78264 8.83982 9.15722 9.55146 10.31542 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.017897 B = 0.002502 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.094963 B =11186.932285 C =12409.684254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.101 4.101 3 C 0.235 3.765 4 N -0.420 5.420 5 C -0.368 4.368 6 H 0.116 0.884 7 C 0.051 3.949 8 N -0.829 5.829 9 Si 0.908 3.092 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.443 3.557 14 O -0.612 6.612 15 C 0.144 3.856 16 H 0.109 0.891 17 C -0.164 4.164 18 N -0.695 5.695 19 C 0.556 3.444 20 O -0.529 6.529 21 C -0.121 4.121 22 C -0.035 4.035 23 C -0.121 4.121 24 C -0.037 4.037 25 C -0.054 4.054 26 N 0.029 4.971 27 O -0.153 6.153 28 O -0.161 6.161 29 C 0.000 4.000 30 H 0.198 0.802 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.274 0.726 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.406 0.594 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 4.187 -13.024 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.103 4.103 3 C 0.113 3.887 4 N -0.135 5.135 5 C -0.494 4.494 6 H 0.133 0.867 7 C -0.159 4.159 8 N -0.463 5.463 9 Si 0.733 3.267 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.232 3.768 14 O -0.500 6.500 15 C 0.037 3.963 16 H 0.127 0.873 17 C -0.222 4.222 18 N -0.348 5.348 19 C 0.341 3.659 20 O -0.407 6.407 21 C -0.125 4.125 22 C -0.054 4.054 23 C -0.139 4.139 24 C -0.057 4.057 25 C -0.136 4.136 26 N 0.549 4.451 27 O -0.371 6.371 28 O -0.376 6.376 29 C -0.020 4.020 30 H 0.215 0.785 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.244 0.756 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.346 3.652 -12.495 13.441 hybrid contribution 0.071 0.285 0.598 0.666 sum 3.417 3.937 -11.897 12.989 Atomic orbital electron populations 1.24211 0.95326 1.02150 1.07011 1.23013 0.94187 0.98222 0.94843 1.18299 0.84444 0.84158 1.01801 1.43706 1.53318 1.11016 1.05501 1.19757 1.46700 0.99584 0.83321 0.86709 1.25231 0.94599 0.96564 0.99459 1.70255 1.21345 1.28237 1.26428 0.86294 0.80692 0.79334 0.80371 1.19468 1.20859 1.19448 1.19734 0.85591 0.87913 0.83569 1.90509 1.61689 1.62765 1.35064 1.20604 0.99323 0.94202 0.82166 0.87325 1.22240 0.97964 0.97736 1.04288 1.45752 1.37266 1.41440 1.10320 1.17839 0.80126 0.80473 0.87479 1.90821 1.55482 1.49460 1.44947 1.20033 0.98549 0.99188 0.94773 1.21982 0.96270 0.95057 0.92063 1.21209 0.96979 0.98116 0.97621 1.21268 0.92912 0.92055 0.99435 1.20996 0.96891 0.99545 0.96210 1.43559 1.00659 1.00243 1.00596 1.94587 1.55787 1.48485 1.38196 1.94527 1.66689 1.69595 1.06808 1.21114 0.92424 0.93193 0.95245 0.78475 0.90923 0.87485 0.91487 0.88214 0.92326 0.92871 0.75621 0.83063 0.82687 0.82513 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.66 19.25 29.55 0.57 -5.09 16 2 C -0.10 -2.32 11.53 -37.12 -0.43 -2.75 16 3 C 0.24 5.28 5.24 -6.83 -0.04 5.24 16 4 N -0.42 -9.55 2.59 -117.94 -0.31 -9.86 16 5 C -0.37 -8.40 8.08 -14.93 -0.12 -8.52 16 6 H 0.12 2.49 4.94 -52.49 -0.26 2.23 16 7 C 0.05 1.16 4.85 -17.47 -0.08 1.07 16 8 N -0.83 -19.66 9.27 55.50 0.51 -19.14 16 9 Si 0.91 18.00 29.65 -169.99 -5.04 12.96 16 10 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 13 C 0.44 9.51 7.04 -10.99 -0.08 9.43 16 14 O -0.61 -13.88 15.38 5.55 0.09 -13.79 16 15 C 0.14 2.64 2.15 -69.08 -0.15 2.49 16 16 H 0.11 2.11 7.09 -51.92 -0.37 1.74 16 17 C -0.16 -2.84 9.05 37.16 0.34 -2.50 16 18 N -0.70 -10.68 4.95 -55.88 -0.28 -10.95 16 19 C 0.56 8.26 7.74 -12.33 -0.10 8.17 16 20 O -0.53 -9.55 16.01 5.32 0.09 -9.47 16 21 C -0.12 -1.38 5.87 -104.97 -0.62 -1.99 16 22 C -0.03 -0.29 9.54 -39.19 -0.37 -0.66 16 23 C -0.12 -0.76 10.03 -39.64 -0.40 -1.16 16 24 C -0.04 -0.29 9.55 -39.49 -0.38 -0.66 16 25 C -0.05 -0.57 6.84 -80.01 -0.55 -1.12 16 26 N 0.03 0.37 4.45 33.93 0.15 0.52 16 27 O -0.15 -2.14 18.44 -29.46 -0.54 -2.68 16 28 O -0.16 -2.02 18.44 -29.46 -0.54 -2.56 16 29 C 0.00 0.00 9.10 -39.18 -0.36 -0.36 16 30 H 0.20 3.38 7.80 -54.08 -0.42 2.96 16 31 H 0.07 1.56 7.36 -51.93 -0.38 1.18 16 32 H 0.11 2.43 6.27 -51.93 -0.33 2.11 16 33 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 34 H 0.10 1.88 5.38 -51.93 -0.28 1.60 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 5.63 5.76 -40.82 -0.24 5.39 16 38 H 0.15 1.04 6.41 -52.48 -0.34 0.71 16 39 H 0.16 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.16 0.89 7.60 -52.49 -0.40 0.49 16 41 H 0.17 2.05 7.20 -52.49 -0.38 1.67 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -29.11 364.81 -6.92 -36.03 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -3.79 Total: 11.85 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.75 Total: 1.60 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.08 Total: -39.43 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.92 Total: -28.51 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.04 Total: 12.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.11 -6.92 -36.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282127531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.164 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds