Wall clock time and date at job start Wed Apr 1 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46696 * 176.00299 * 3 2 1 5 5 C 1.37093 * 120.00113 * 85.63212 * 4 3 2 6 6 H 1.07999 * 120.00056 * 179.62427 * 5 4 3 7 7 C 1.38950 * 120.00004 * 359.62015 * 5 4 3 8 8 N 1.31413 * 120.00036 * 328.30531 * 7 5 4 9 9 Si 1.86801 * 120.00318 * 148.30718 * 7 5 4 10 10 H 1.48501 * 109.47088 * 59.99865 * 9 7 5 11 11 H 1.48492 * 109.47180 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47063 * 300.00211 * 9 7 5 13 13 C 1.34778 * 119.99825 * 265.62464 * 4 3 2 14 14 O 1.21289 * 120.00114 * 4.53649 * 13 4 3 15 15 C 1.50699 * 119.99802 * 184.53337 * 13 4 3 16 16 H 1.09007 * 109.47039 * 51.65553 * 15 13 4 17 17 C 1.53002 * 109.47295 * 291.65618 * 15 13 4 18 18 N 1.46502 * 109.47117 * 171.65288 * 15 13 4 19 19 C 1.34779 * 120.00182 * 204.99943 * 18 15 13 20 20 O 1.21551 * 119.99783 * 0.02562 * 19 18 15 21 21 C 1.47839 * 120.00210 * 179.97438 * 19 18 15 22 22 C 1.39596 * 120.14460 * 359.72953 * 21 19 18 23 23 C 1.37935 * 119.85268 * 179.76518 * 22 21 19 24 24 C 1.38378 * 120.14626 * 0.50634 * 23 22 21 25 25 C 1.38338 * 120.29049 * 359.74329 * 24 23 22 26 26 N 1.48015 * 119.92327 * 179.97438 * 25 24 23 27 27 O 1.21803 * 119.99407 * 180.02562 * 26 25 24 28 28 O 1.21794 * 120.00445 * 0.02562 * 26 25 24 29 29 C 1.37974 * 120.14884 * 0.02562 * 25 24 23 30 30 H 4.40637 * 5.51511 * 180.02562 * 4 1 2 31 31 H 1.08995 * 109.46769 * 56.00395 * 3 2 1 32 32 H 1.08992 * 109.47091 * 296.00211 * 3 2 1 33 33 H 0.97003 * 120.00450 * 180.02562 * 8 7 5 34 34 H 1.08990 * 109.46884 * 55.45649 * 17 15 13 35 35 H 1.08997 * 109.46798 * 175.46243 * 17 15 13 36 36 H 1.08999 * 109.46742 * 295.45627 * 17 15 13 37 37 H 0.96998 * 120.00169 * 25.00173 * 18 15 13 38 38 H 1.08007 * 120.07312 * 0.02562 * 22 21 19 39 39 H 1.08003 * 119.92433 * 180.25450 * 23 22 21 40 40 H 1.07998 * 119.85097 * 179.76515 * 24 23 22 41 41 H 1.07990 * 120.07688 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3788 -0.0963 5 6 3.2765 2.1361 1.0375 6 1 3.6417 3.1500 0.9671 7 6 2.9513 1.5993 2.2772 8 7 1.9893 0.7095 2.3760 9 14 3.8816 2.1423 3.8033 10 1 3.7135 3.6058 3.9909 11 1 3.3467 1.4271 4.9897 12 1 5.3236 1.8263 3.6427 13 6 3.4419 1.9019 -1.2995 14 8 3.2384 1.2618 -2.3094 15 6 4.0395 3.2824 -1.3901 16 1 4.9005 3.3500 -0.7250 17 6 2.9931 4.3193 -0.9766 18 7 4.4652 3.5408 -2.7679 19 6 5.4424 4.4356 -3.0147 20 8 5.9709 5.0278 -2.0941 21 6 5.8724 4.6960 -4.4050 22 6 5.2722 4.0126 -5.4640 23 6 5.6747 4.2638 -6.7592 24 6 6.6783 5.1831 -7.0092 25 6 7.2808 5.8599 -5.9639 26 7 8.3539 6.8411 -6.2405 27 8 8.8856 7.4373 -5.3211 28 8 8.7053 7.0522 -7.3874 29 6 6.8844 5.6215 -4.6640 30 1 -1.0502 -0.0003 0.0002 31 1 3.0096 -0.5738 -0.8520 32 1 3.0095 -0.4497 0.9236 33 1 1.7620 0.3350 3.2414 34 1 2.6176 4.0796 0.0181 35 1 3.4481 5.3097 -0.9644 36 1 2.1683 4.3071 -1.6891 37 1 4.0437 3.0680 -3.5025 38 1 4.4915 3.2920 -5.2700 39 1 5.2083 3.7388 -7.5798 40 1 6.9923 5.3733 -8.0249 41 1 7.3552 6.1508 -3.8489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282127531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:26 Heat of formation + Delta-G solvation = 18.077958 kcal Electronic energy + Delta-G solvation = -29153.507418 eV Core-core repulsion = 24811.089846 eV Total energy + Delta-G solvation = -4342.417571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.34944 -41.72882 -40.70228 -39.52413 -37.75618 -37.25810 -36.07556 -33.92633 -33.75833 -33.20957 -32.71372 -31.34389 -28.30490 -27.70560 -26.95827 -25.90618 -24.16618 -23.62750 -21.94979 -21.12755 -20.65556 -19.98392 -19.76119 -18.69705 -18.68815 -18.30035 -17.78972 -17.29647 -17.12853 -16.43069 -16.30347 -16.08118 -15.94431 -15.88028 -15.31638 -15.13094 -14.77756 -14.44106 -14.13580 -13.91501 -13.73528 -13.47944 -13.43091 -13.13606 -13.07643 -12.78503 -12.75383 -12.54751 -12.36472 -12.35520 -12.18423 -12.09807 -11.34382 -11.23040 -11.16517 -10.84147 -10.60154 -10.58199 -10.45671 -10.16824 -10.00977 -8.41274 -5.85557 -1.34830 -0.58397 0.16925 0.23541 1.36638 1.47688 1.50805 1.56047 1.71033 1.82442 2.14059 2.32053 2.35262 2.41173 2.95525 3.10483 3.22356 3.32369 3.53646 3.60752 3.76753 3.89892 3.98654 4.09058 4.22997 4.23893 4.45989 4.55378 4.64256 4.76765 4.80415 4.85047 4.86759 4.95196 5.04200 5.17255 5.23189 5.32947 5.39619 5.49352 5.63232 6.27904 6.36468 6.39560 6.96217 7.02478 7.14403 7.43401 7.81610 8.57628 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.017897 B = 0.002502 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.094963 B =11186.932285 C =12409.684254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.146 4.146 3 C 0.237 3.763 4 N -0.431 5.431 5 C -0.381 4.381 6 H 0.121 0.879 7 C 0.018 3.982 8 N -0.851 5.851 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.440 3.560 14 O -0.626 6.626 15 C 0.152 3.848 16 H 0.095 0.905 17 C -0.153 4.153 18 N -0.690 5.690 19 C 0.558 3.442 20 O -0.569 6.569 21 C -0.136 4.136 22 C -0.023 4.023 23 C -0.098 4.098 24 C -0.020 4.020 25 C -0.066 4.066 26 N 0.030 4.970 27 O -0.210 6.210 28 O -0.139 6.139 29 C -0.010 4.010 30 H 0.234 0.766 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.274 0.726 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.169 0.831 39 H 0.203 0.797 40 H 0.186 0.814 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 3.883 -15.439 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.147 4.147 3 C 0.114 3.886 4 N -0.147 5.147 5 C -0.507 4.507 6 H 0.138 0.862 7 C -0.189 4.189 8 N -0.485 5.485 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.230 3.770 14 O -0.515 6.515 15 C 0.044 3.956 16 H 0.113 0.887 17 C -0.211 4.211 18 N -0.343 5.343 19 C 0.345 3.655 20 O -0.449 6.449 21 C -0.140 4.140 22 C -0.042 4.042 23 C -0.116 4.116 24 C -0.039 4.039 25 C -0.149 4.149 26 N 0.547 4.453 27 O -0.414 6.414 28 O -0.363 6.363 29 C -0.031 4.031 30 H 0.250 0.750 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.187 0.813 39 H 0.220 0.780 40 H 0.203 0.797 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.427 3.380 -14.828 15.401 hybrid contribution 0.285 0.302 1.153 1.226 sum 2.712 3.682 -13.675 14.419 Atomic orbital electron populations 1.25105 0.96319 1.00415 1.05223 1.23362 0.94940 0.99907 0.96522 1.18207 0.84846 0.84265 1.01259 1.43880 1.53646 1.11171 1.05965 1.20016 1.46887 1.00087 0.83668 0.86163 1.25857 0.94847 0.96781 1.01421 1.70330 1.22165 1.29222 1.26787 0.85400 0.79176 0.78890 0.77481 1.19201 1.20889 1.19723 1.20213 0.85015 0.88760 0.83042 1.90479 1.62192 1.63462 1.35360 1.20358 0.98785 0.92689 0.83784 0.88720 1.22113 0.97818 0.97739 1.03432 1.45615 1.37629 1.41831 1.09261 1.18322 0.79092 0.79330 0.88749 1.90798 1.56627 1.50816 1.46671 1.19674 0.99910 1.00986 0.93467 1.22253 0.95729 0.94132 0.92060 1.21706 0.95418 0.96675 0.97754 1.21746 0.91882 0.90587 0.99727 1.21098 0.97040 1.00049 0.96720 1.43843 1.00874 1.00326 1.00290 1.94604 1.57726 1.50596 1.38473 1.94481 1.66213 1.68906 1.06745 1.20933 0.92965 0.93688 0.95467 0.74967 0.90856 0.88476 0.91564 0.89822 0.91436 0.92162 0.74554 0.81332 0.77988 0.79680 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.32 19.25 74.32 1.43 -8.89 16 2 C -0.15 -6.67 11.53 31.13 0.36 -6.31 16 3 C 0.24 10.80 5.24 84.58 0.44 11.25 16 4 N -0.43 -19.85 2.59 -645.43 -1.67 -21.53 16 5 C -0.38 -17.60 8.08 84.04 0.68 -16.92 16 6 H 0.12 5.30 4.94 -2.91 -0.01 5.29 16 7 C 0.02 0.83 4.85 84.93 0.41 1.24 16 8 N -0.85 -40.57 9.27 21.66 0.20 -40.37 16 9 Si 0.97 37.14 29.65 68.60 2.03 39.18 16 10 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 13 C 0.44 18.96 7.04 87.66 0.62 19.57 16 14 O -0.63 -28.13 15.38 -3.06 -0.05 -28.17 16 15 C 0.15 5.60 2.15 44.24 0.09 5.69 16 16 H 0.09 3.78 7.09 -2.38 -0.02 3.76 16 17 C -0.15 -5.26 9.05 71.98 0.65 -4.61 16 18 N -0.69 -20.83 4.95 -448.97 -2.22 -23.05 16 19 C 0.56 16.63 7.74 86.78 0.67 17.30 16 20 O -0.57 -21.29 16.01 -3.88 -0.06 -21.35 16 21 C -0.14 -2.96 5.87 -20.09 -0.12 -3.08 16 22 C -0.02 -0.30 9.54 22.53 0.21 -0.09 16 23 C -0.10 -0.72 10.03 22.23 0.22 -0.49 16 24 C -0.02 -0.23 9.55 22.33 0.21 -0.02 16 25 C -0.07 -1.31 6.84 36.34 0.25 -1.06 16 26 N 0.03 0.75 4.45 -46.56 -0.21 0.55 16 27 O -0.21 -6.18 18.44 18.88 0.35 -5.83 16 28 O -0.14 -3.27 18.44 18.89 0.35 -2.92 16 29 C -0.01 -0.24 9.10 22.53 0.20 -0.03 16 30 H 0.23 7.33 7.80 -4.41 -0.03 7.29 16 31 H 0.07 3.23 7.36 -2.39 -0.02 3.21 16 32 H 0.10 4.55 6.27 -2.39 -0.01 4.53 16 33 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 34 H 0.08 3.17 5.38 -2.39 -0.01 3.16 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 10.89 5.76 -92.71 -0.53 10.35 16 38 H 0.17 1.66 6.41 -2.91 -0.02 1.64 16 39 H 0.20 -0.25 8.06 -2.91 -0.02 -0.27 16 40 H 0.19 1.10 7.60 -2.91 -0.02 1.08 16 41 H 0.15 3.93 7.20 -2.92 -0.02 3.91 16 Total: -1.00 -65.11 364.81 5.65 -59.46 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.58 Total: 30.51 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.34 Total: 13.54 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -3.90 Total: -84.40 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: 0.59 Total: -58.28 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.18 kcal Total: -65.11 5.65 -59.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282127531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.540 kcal (2) G-P(sol) polarization free energy of solvation -65.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds