Wall clock time and date at job start Wed Apr 1 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34500 * 124.44963 * 2 1 4 4 O 1.21479 * 125.67670 * 0.03129 * 3 2 1 5 5 C 1.47576 * 108.65033 * 179.97438 * 3 2 1 6 6 C 1.38795 * 134.18900 * 180.02562 * 5 3 2 7 7 C 1.38268 * 119.83611 * 179.71710 * 6 5 3 8 8 C 1.39016 * 120.39215 * 0.25936 * 7 6 5 9 9 N 1.39279 * 119.85482 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00049 * 33.71549 * 9 8 7 11 11 O 1.21366 * 120.00272 * 5.27763 * 10 9 8 12 12 C 1.49369 * 120.00109 * 185.28171 * 10 9 8 13 13 O 1.21356 * 119.99615 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00109 * 179.97438 * 12 10 9 15 15 C 1.46497 * 119.99794 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.46854 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47140 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99669 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99965 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00015 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46816 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47418 * 119.99611 * 21 19 17 24 24 H 1.48499 * 109.46951 * 240.00057 * 21 19 17 25 25 C 1.39484 * 120.28514 * 359.97438 * 8 7 6 26 26 C 1.38308 * 119.64655 * 0.02562 * 25 8 7 27 27 C 1.34535 * 124.44371 * 180.59594 * 2 1 3 28 28 O 1.21440 * 125.73811 * 359.41053 * 27 2 1 29 29 H 1.09001 * 109.46707 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47319 * 119.97277 * 1 2 3 31 31 H 1.09000 * 109.47380 * 239.98177 * 1 2 3 32 32 H 1.07997 * 120.07925 * 359.97438 * 6 5 3 33 33 H 1.07994 * 119.80320 * 180.27035 * 7 6 5 34 34 H 0.97001 * 120.00404 * 213.71450 * 9 8 7 35 35 H 0.97005 * 120.00199 * 359.97438 * 14 12 10 36 36 H 1.08997 * 109.47722 * 299.99583 * 15 14 12 37 37 H 1.09003 * 109.47499 * 60.00309 * 15 14 12 38 38 H 1.09002 * 109.47383 * 300.00383 * 16 15 14 39 39 H 1.09003 * 109.47169 * 60.00264 * 16 15 14 40 40 H 0.97001 * 119.99620 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.17492 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2258 1.1091 0.0000 4 8 1.8129 2.2516 0.0005 5 6 3.6459 0.7073 0.0006 6 6 4.8477 1.4015 0.0013 7 6 6.0433 0.7070 0.0077 8 6 6.0491 -0.6831 0.0080 9 7 7.2600 -1.3714 0.0139 10 6 8.3225 -0.8602 0.6668 11 8 8.1998 0.1497 1.3286 12 6 9.6512 -1.5365 0.5758 13 8 9.7738 -2.5466 -0.0857 14 7 10.7138 -1.0251 1.2282 15 6 12.0168 -1.6888 1.1393 16 6 13.0431 -0.9101 1.9648 17 6 14.3837 -1.5925 1.8729 18 1 14.4928 -2.4913 1.2843 19 6 15.4707 -1.0692 2.5403 20 7 15.3379 0.0258 3.2566 21 14 17.1326 -1.9145 2.4258 22 1 17.0172 -3.1183 1.5639 23 1 18.1248 -0.9785 1.8391 24 1 17.5765 -2.3194 3.7838 25 6 4.8476 -1.3916 0.0024 26 6 3.6478 -0.7037 -0.0040 27 6 2.2259 -1.1094 -0.0115 28 8 1.8142 -2.2519 -0.0133 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5134 -0.8902 31 1 -0.3634 -0.5141 0.8898 32 1 4.8490 2.4815 0.0011 33 1 6.9781 1.2477 0.0127 34 1 7.3386 -2.2186 -0.4518 35 1 10.6159 -0.2175 1.7567 36 1 11.9344 -2.7045 1.5260 37 1 12.3378 -1.7213 0.0982 38 1 13.1254 0.1056 1.5777 39 1 12.7223 -0.8772 3.0060 40 1 16.1028 0.3941 3.7258 41 1 4.8542 -2.4716 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344415674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:13 Heat of formation + Delta-G solvation = -81.099746 kcal Electronic energy + Delta-G solvation = -27892.572164 eV Core-core repulsion = 23545.853924 eV Total energy + Delta-G solvation = -4346.718239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.76679 -41.24967 -39.35679 -39.08037 -38.20604 -36.38681 -35.71966 -34.91020 -32.96531 -32.24636 -31.17486 -29.96298 -28.03469 -26.23281 -25.43560 -24.15121 -23.61204 -22.36180 -21.21012 -20.74169 -20.14188 -19.01039 -18.45995 -17.76247 -17.26892 -17.07609 -16.82465 -16.32973 -16.09254 -15.89244 -15.32279 -15.22279 -14.99072 -14.58377 -14.54540 -14.44351 -14.40850 -13.96311 -13.76789 -13.67087 -13.29381 -13.14569 -13.00060 -12.43266 -12.39640 -11.81223 -11.33303 -11.23298 -11.14362 -10.97788 -10.82851 -10.71501 -10.51500 -10.33537 -9.98686 -9.76904 -9.61538 -9.33277 -8.92514 -8.85836 -8.50034 -6.17021 -4.21044 -0.47932 0.37802 1.13096 1.60349 1.80527 2.06123 2.45354 2.97265 3.13914 3.19064 3.23651 3.31678 3.35524 3.50471 3.80089 4.05660 4.31123 4.40325 4.44656 4.56377 4.62613 4.75187 4.76341 4.92683 5.07921 5.13571 5.20304 5.26033 5.43443 5.51904 5.67892 6.02724 6.09934 6.11051 6.15150 6.38534 6.55048 6.57555 6.70475 7.16532 7.20230 7.40814 7.47614 7.60190 7.79353 8.01018 8.19070 8.84690 9.44545 10.94374 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.033454 B = 0.001634 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.776310 B =17128.893703 C =17730.821297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.581 5.581 3 C 0.579 3.421 4 O -0.465 6.465 5 C -0.163 4.163 6 C -0.015 4.015 7 C -0.102 4.102 8 C 0.179 3.821 9 N -0.649 5.649 10 C 0.512 3.488 11 O -0.491 6.491 12 C 0.500 3.500 13 O -0.526 6.526 14 N -0.680 5.680 15 C 0.118 3.882 16 C 0.010 3.990 17 C -0.525 4.525 18 H 0.061 0.939 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.067 4.067 26 C -0.120 4.120 27 C 0.579 3.421 28 O -0.460 6.460 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.429 0.571 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.263 0.737 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.533 1.053 -7.803 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.324 5.324 3 C 0.369 3.631 4 O -0.336 6.336 5 C -0.168 4.168 6 C -0.035 4.035 7 C -0.123 4.123 8 C 0.083 3.917 9 N -0.297 5.297 10 C 0.295 3.705 11 O -0.363 6.363 12 C 0.279 3.721 13 O -0.404 6.404 14 N -0.331 5.331 15 C -0.004 4.004 16 C -0.027 4.027 17 C -0.563 4.563 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.088 4.088 26 C -0.124 4.124 27 C 0.368 3.632 28 O -0.331 6.331 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.269 0.731 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.847 1.155 -7.664 28.906 hybrid contribution 0.847 -0.440 0.091 0.958 sum -27.001 0.715 -7.573 28.052 Atomic orbital electron populations 1.21924 0.75151 1.05055 1.03906 1.46391 1.09408 1.08366 1.68208 1.18278 0.86473 0.83991 0.74354 1.90824 1.79345 1.19296 1.44170 1.20443 0.93822 0.94212 1.08307 1.20638 0.88739 1.01023 0.93069 1.21475 0.99663 0.92372 0.98759 1.17774 0.84904 0.91620 0.97429 1.43176 1.08211 1.25960 1.52313 1.20814 0.85861 0.84978 0.78894 1.90801 1.84435 1.23732 1.37294 1.19593 0.84814 0.85454 0.82252 1.90776 1.84680 1.24210 1.40689 1.46265 1.09639 1.29640 1.47561 1.22014 0.79359 0.97098 1.01882 1.19377 0.92408 0.95852 0.95104 1.21031 0.93271 1.11145 1.30884 0.92064 1.25001 0.99338 0.94941 0.94957 1.69964 1.31056 1.20647 1.31300 0.86436 0.83499 0.79577 0.77929 1.19565 1.20892 1.20899 1.20422 0.88354 1.00944 0.99107 1.20143 0.93302 0.94286 1.04656 1.18278 0.86281 0.84031 0.74639 1.90825 1.79349 1.19280 1.43660 0.88502 0.90183 0.90156 0.83328 0.82635 0.73129 0.75222 0.91583 0.91578 0.95587 0.95589 0.92767 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.87 59.85 0.65 1.07 16 2 N -0.58 -4.71 3.02 -125.10 -0.38 -5.09 16 3 C 0.58 5.33 8.01 -12.58 -0.10 5.23 16 4 O -0.46 -5.24 17.43 5.38 0.09 -5.15 16 5 C -0.16 -1.39 6.40 -104.80 -0.67 -2.06 16 6 C -0.02 -0.12 10.08 -39.36 -0.40 -0.51 16 7 C -0.10 -0.86 8.63 -39.28 -0.34 -1.20 16 8 C 0.18 1.51 6.27 -83.72 -0.53 0.99 16 9 N -0.65 -5.84 5.30 -10.25 -0.05 -5.89 16 10 C 0.51 6.09 7.61 -11.62 -0.09 6.01 16 11 O -0.49 -6.52 14.16 5.48 0.08 -6.44 16 12 C 0.50 7.26 7.89 -11.62 -0.09 7.17 16 13 O -0.53 -8.59 16.48 5.49 0.09 -8.50 16 14 N -0.68 -10.80 5.55 -60.76 -0.34 -11.14 16 15 C 0.12 2.24 5.61 -4.04 -0.02 2.22 16 16 C 0.01 0.23 5.09 -27.88 -0.14 0.09 16 17 C -0.52 -13.83 9.11 -34.44 -0.31 -14.15 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 21 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.07 -0.51 10.01 -39.09 -0.39 -0.90 16 26 C -0.12 -1.01 6.40 -104.85 -0.67 -1.68 16 27 C 0.58 5.31 8.03 -12.43 -0.10 5.21 16 28 O -0.46 -5.19 17.80 5.42 0.10 -5.09 16 29 H 0.10 0.44 7.58 -51.93 -0.39 0.05 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.16 1.38 6.40 -52.49 -0.34 1.05 16 34 H 0.43 3.14 8.29 -40.82 -0.34 2.80 16 35 H 0.41 6.14 7.94 -40.82 -0.32 5.81 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -32.31 370.58 -6.73 -39.04 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.32 Total: 2.59 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -3.30 Total: 9.00 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.03 Total: -46.66 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: 0.36 Total: -25.18 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.31 -6.73 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344415674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.061 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds