Wall clock time and date at job start Wed Apr 1 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34500 * 124.44963 * 2 1 4 4 O 1.21479 * 125.67670 * 0.03129 * 3 2 1 5 5 C 1.47576 * 108.65033 * 179.97438 * 3 2 1 6 6 C 1.38795 * 134.18900 * 180.02562 * 5 3 2 7 7 C 1.38268 * 119.83611 * 179.71710 * 6 5 3 8 8 C 1.39016 * 120.39215 * 0.25936 * 7 6 5 9 9 N 1.39279 * 119.85482 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00049 * 33.71549 * 9 8 7 11 11 O 1.21366 * 120.00272 * 5.27763 * 10 9 8 12 12 C 1.49369 * 120.00109 * 185.28171 * 10 9 8 13 13 O 1.21356 * 119.99615 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00109 * 179.97438 * 12 10 9 15 15 C 1.46497 * 119.99794 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.46854 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47140 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99669 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99965 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00015 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46816 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47418 * 119.99611 * 21 19 17 24 24 H 1.48499 * 109.46951 * 240.00057 * 21 19 17 25 25 C 1.39484 * 120.28514 * 359.97438 * 8 7 6 26 26 C 1.38308 * 119.64655 * 0.02562 * 25 8 7 27 27 C 1.34535 * 124.44371 * 180.59594 * 2 1 3 28 28 O 1.21440 * 125.73811 * 359.41053 * 27 2 1 29 29 H 1.09001 * 109.46707 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47319 * 119.97277 * 1 2 3 31 31 H 1.09000 * 109.47380 * 239.98177 * 1 2 3 32 32 H 1.07997 * 120.07925 * 359.97438 * 6 5 3 33 33 H 1.07994 * 119.80320 * 180.27035 * 7 6 5 34 34 H 0.97001 * 120.00404 * 213.71450 * 9 8 7 35 35 H 0.97005 * 120.00199 * 359.97438 * 14 12 10 36 36 H 1.08997 * 109.47722 * 299.99583 * 15 14 12 37 37 H 1.09003 * 109.47499 * 60.00309 * 15 14 12 38 38 H 1.09002 * 109.47383 * 300.00383 * 16 15 14 39 39 H 1.09003 * 109.47169 * 60.00264 * 16 15 14 40 40 H 0.97001 * 119.99620 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.17492 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2258 1.1091 0.0000 4 8 1.8129 2.2516 0.0005 5 6 3.6459 0.7073 0.0006 6 6 4.8477 1.4015 0.0013 7 6 6.0433 0.7070 0.0077 8 6 6.0491 -0.6831 0.0080 9 7 7.2600 -1.3714 0.0139 10 6 8.3225 -0.8602 0.6668 11 8 8.1998 0.1497 1.3286 12 6 9.6512 -1.5365 0.5758 13 8 9.7738 -2.5466 -0.0857 14 7 10.7138 -1.0251 1.2282 15 6 12.0168 -1.6888 1.1393 16 6 13.0431 -0.9101 1.9648 17 6 14.3837 -1.5925 1.8729 18 1 14.4928 -2.4913 1.2843 19 6 15.4707 -1.0692 2.5403 20 7 15.3379 0.0258 3.2566 21 14 17.1326 -1.9145 2.4258 22 1 17.0172 -3.1183 1.5639 23 1 18.1248 -0.9785 1.8391 24 1 17.5765 -2.3194 3.7838 25 6 4.8476 -1.3916 0.0024 26 6 3.6478 -0.7037 -0.0040 27 6 2.2259 -1.1094 -0.0115 28 8 1.8142 -2.2519 -0.0133 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5134 -0.8902 31 1 -0.3634 -0.5141 0.8898 32 1 4.8490 2.4815 0.0011 33 1 6.9781 1.2477 0.0127 34 1 7.3386 -2.2186 -0.4518 35 1 10.6159 -0.2175 1.7567 36 1 11.9344 -2.7045 1.5260 37 1 12.3378 -1.7213 0.0982 38 1 13.1254 0.1056 1.5777 39 1 12.7223 -0.8772 3.0060 40 1 16.1028 0.3941 3.7258 41 1 4.8542 -2.4716 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344415674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:12 Heat of formation + Delta-G solvation = -104.178913 kcal Electronic energy + Delta-G solvation = -27893.572952 eV Core-core repulsion = 23545.853924 eV Total energy + Delta-G solvation = -4347.719027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.45931 -42.21048 -40.38566 -39.85287 -39.12556 -37.20553 -36.88417 -36.01817 -34.81191 -32.87809 -31.87937 -31.67863 -28.69189 -27.48569 -26.47468 -25.38746 -24.26125 -23.37658 -22.69697 -21.71474 -20.91520 -20.01923 -19.30668 -18.57402 -18.45147 -17.95498 -17.83896 -17.61701 -17.14734 -16.68190 -16.51712 -16.37656 -16.05295 -15.99651 -15.47883 -15.23466 -15.16773 -15.06521 -14.67778 -14.47777 -14.32784 -14.30239 -13.83650 -13.55941 -13.24156 -13.13302 -12.95862 -12.85128 -12.50512 -12.28410 -12.00515 -11.70100 -11.68750 -11.58314 -11.40086 -10.99124 -10.83732 -10.61158 -10.38945 -10.22423 -9.62350 -8.22643 -6.33141 -1.19596 -0.29479 0.17602 0.81849 1.03309 1.25004 1.43277 1.45178 1.57286 1.75745 1.96314 2.30664 2.43553 2.44623 2.62764 3.10939 3.13043 3.25243 3.45352 3.75666 3.94777 4.02818 4.16870 4.34368 4.39074 4.39496 4.47816 4.50537 4.62300 4.71504 4.78863 4.84071 4.87927 4.97810 5.04620 5.40279 5.44886 5.48447 5.57395 5.70617 5.79896 5.99084 6.14172 6.22573 6.47656 6.50955 6.78454 6.84789 7.36662 8.89312 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.033454 B = 0.001634 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.776310 B =17128.893703 C =17730.821297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.579 5.579 3 C 0.582 3.418 4 O -0.488 6.488 5 C -0.166 4.166 6 C -0.010 4.010 7 C -0.103 4.103 8 C 0.170 3.830 9 N -0.632 5.632 10 C 0.523 3.477 11 O -0.505 6.505 12 C 0.506 3.494 13 O -0.542 6.542 14 N -0.684 5.684 15 C 0.138 3.862 16 C 0.016 3.984 17 C -0.543 4.543 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.965 3.035 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.280 1.280 25 C -0.054 4.054 26 C -0.126 4.126 27 C 0.583 3.417 28 O -0.483 6.483 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.439 0.561 35 H 0.417 0.583 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.010 0.990 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.227 0.332 -8.456 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.321 5.321 3 C 0.373 3.627 4 O -0.361 6.361 5 C -0.171 4.171 6 C -0.029 4.029 7 C -0.124 4.124 8 C 0.074 3.926 9 N -0.280 5.280 10 C 0.305 3.695 11 O -0.378 6.378 12 C 0.286 3.714 13 O -0.420 6.420 14 N -0.335 5.335 15 C 0.015 3.985 16 C -0.021 4.021 17 C -0.582 4.582 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.075 4.075 26 C -0.130 4.130 27 C 0.373 3.627 28 O -0.356 6.356 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.280 0.720 35 H 0.253 0.747 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -28.594 0.417 -8.342 29.788 hybrid contribution 0.956 -0.200 0.266 1.012 sum -27.638 0.217 -8.075 28.794 Atomic orbital electron populations 1.22174 0.73572 1.05872 1.05074 1.46479 1.10466 1.07739 1.67445 1.18360 0.86838 0.83802 0.73707 1.90814 1.79760 1.20126 1.45424 1.20495 0.93775 0.94358 1.08458 1.20782 0.88069 1.01882 0.92153 1.21525 0.99818 0.92498 0.98538 1.17815 0.84697 0.91698 0.98380 1.42965 1.07614 1.26048 1.51358 1.20124 0.85349 0.84627 0.79352 1.90813 1.84453 1.24293 1.38270 1.19907 0.85398 0.85001 0.81123 1.90769 1.85168 1.24933 1.41118 1.46048 1.09116 1.29928 1.48441 1.21505 0.79951 0.96304 1.00736 1.19201 0.92855 0.95366 0.94702 1.21491 0.94703 1.11372 1.30588 0.91666 1.25877 1.03191 0.95575 0.94657 1.70075 1.32195 1.22116 1.32313 0.85392 0.78874 0.78726 0.78019 1.18590 1.20522 1.20577 1.20539 0.87520 1.01877 0.97550 1.20153 0.93277 0.94289 1.05326 1.18337 0.86605 0.83812 0.73964 1.90816 1.79750 1.20060 1.44939 0.87865 0.88969 0.89130 0.81668 0.82962 0.72009 0.74660 0.91792 0.91712 0.97201 0.97298 0.92643 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.87 127.77 1.39 2.05 16 2 N -0.58 -8.72 3.02 -786.61 -2.38 -11.10 16 3 C 0.58 10.09 8.01 86.75 0.69 10.79 16 4 O -0.49 -10.60 17.43 -3.65 -0.06 -10.66 16 5 C -0.17 -2.59 6.40 -19.98 -0.13 -2.71 16 6 C -0.01 -0.13 10.08 22.41 0.23 0.09 16 7 C -0.10 -1.58 8.63 22.46 0.19 -1.38 16 8 C 0.17 2.53 6.27 38.45 0.24 2.78 16 9 N -0.63 -10.14 5.30 -304.69 -1.61 -11.76 16 10 C 0.52 11.72 7.61 87.24 0.66 12.38 16 11 O -0.50 -12.79 14.16 -3.30 -0.05 -12.84 16 12 C 0.51 14.13 7.89 87.24 0.69 14.82 16 13 O -0.54 -16.99 16.48 -3.27 -0.05 -17.05 16 14 N -0.68 -21.45 5.55 -464.50 -2.58 -24.03 16 15 C 0.14 5.23 5.61 86.38 0.48 5.71 16 16 C 0.02 0.77 5.09 29.85 0.15 0.92 16 17 C -0.54 -28.73 9.11 25.60 0.23 -28.50 16 18 H 0.07 3.32 7.74 -2.91 -0.02 3.29 16 19 C 0.01 0.31 5.46 84.65 0.46 0.77 16 20 N -0.93 -53.18 13.29 21.45 0.28 -52.89 16 21 Si 0.96 42.15 29.54 68.60 2.03 44.17 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 C -0.05 -0.70 10.01 22.59 0.23 -0.48 16 26 C -0.13 -1.92 6.40 -20.01 -0.13 -2.05 16 27 C 0.58 9.95 8.03 86.83 0.70 10.64 16 28 O -0.48 -10.31 17.80 -3.53 -0.06 -10.37 16 29 H 0.10 0.82 7.58 -2.39 -0.02 0.80 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.15 2.49 6.40 -2.91 -0.02 2.48 16 34 H 0.44 5.46 8.29 -92.71 -0.77 4.69 16 35 H 0.42 12.38 7.94 -92.70 -0.74 11.64 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -68.15 370.58 1.23 -66.92 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -0.38 Total: 13.77 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 6.10 Total: 25.84 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -6.29 Total: -99.78 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.23 Total: -50.92 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.15 1.23 -66.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344415674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.262 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds