Wall clock time and date at job start Wed Apr 1 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35809 * 117.00188 * 2 1 4 4 C 1.38932 * 119.90091 * 180.02562 * 3 2 1 5 5 C 1.37757 * 120.09885 * 180.02562 * 4 3 2 6 6 C 1.39777 * 119.90123 * 359.97365 * 5 4 3 7 7 C 1.47466 * 120.10125 * 179.97438 * 6 5 4 8 8 O 1.34777 * 126.77057 * 309.59429 * 7 6 5 9 9 C 1.34084 * 108.24382 * 180.22889 * 8 7 6 10 10 N 1.29897 * 109.80252 * 359.77058 * 9 8 7 11 11 C 1.35935 * 108.74679 * 359.97438 * 10 9 8 12 12 C 1.47027 * 126.62952 * 179.97438 * 11 10 9 13 13 O 1.21662 * 120.00293 * 174.94320 * 12 11 10 14 14 N 1.34781 * 120.00033 * 354.95486 * 12 11 10 15 15 C 1.46501 * 120.00099 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46717 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00421 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99459 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99539 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00325 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99788 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00158 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99916 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46765 * 90.00226 * 23 21 19 25 25 H 1.48501 * 109.47130 * 209.99907 * 23 21 19 26 26 H 1.48501 * 109.47118 * 329.99943 * 23 21 19 27 27 C 1.39770 * 119.79936 * 0.25583 * 6 5 4 28 28 C 1.37769 * 119.89874 * 359.48899 * 27 6 5 29 29 H 1.08994 * 109.47194 * 299.99785 * 1 2 3 30 30 H 1.09001 * 109.47285 * 60.00043 * 1 2 3 31 31 H 1.09005 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.94877 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.05094 * 179.97438 * 5 4 3 34 34 H 1.08000 * 125.10202 * 179.73986 * 9 8 7 35 35 H 0.97000 * 119.99803 * 359.97438 * 14 12 11 36 36 H 1.08992 * 109.47071 * 299.99728 * 15 14 12 37 37 H 1.09003 * 109.47053 * 59.99877 * 15 14 12 38 38 H 0.96996 * 120.00517 * 0.02562 * 18 16 15 39 39 H 0.97000 * 119.99786 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.05172 * 179.72139 * 27 6 5 41 41 H 1.07995 * 119.94935 * 180.23240 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 3.4331 1.2803 -0.0005 5 6 4.0628 2.5055 0.0000 6 6 3.3036 3.6792 0.0005 7 6 3.9731 4.9931 0.0017 8 8 4.9521 5.3990 0.8342 9 6 5.2840 6.6570 0.5101 10 7 4.5612 7.0587 -0.4916 11 6 3.7220 6.0532 -0.8557 12 6 2.7339 6.0860 -1.9440 13 8 2.1061 5.0828 -2.2261 14 7 2.5238 7.2274 -2.6293 15 6 1.5397 7.2599 -3.7141 16 6 1.4972 8.6425 -4.3123 17 8 2.2182 9.5146 -3.8759 18 7 0.6585 8.9094 -5.3330 19 6 0.6194 10.1673 -5.8770 20 1 1.2609 10.9441 -5.4878 21 6 -0.2456 10.4428 -6.9290 22 7 -0.2827 11.6483 -7.4507 23 14 -1.3556 9.0993 -7.6016 24 1 -2.6454 9.1084 -6.8656 25 1 -1.6076 9.3418 -9.0449 26 1 -0.6964 7.7799 -7.4290 27 6 1.9080 3.6036 0.0059 28 6 1.2868 2.3739 0.0000 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 4.0189 0.3730 -0.0005 33 1 5.1415 2.5593 0.0000 34 1 6.0387 7.2480 1.0077 35 1 3.0242 8.0273 -2.4042 36 1 1.8216 6.5398 -4.4821 37 1 0.5560 7.0045 -3.3200 38 1 0.0821 8.2119 -5.6823 39 1 -0.8868 11.8406 -8.1848 40 1 1.3174 4.5078 0.0109 41 1 0.2085 2.3146 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344977174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:37 Heat of formation + Delta-G solvation = -47.748230 kcal Electronic energy + Delta-G solvation = -28626.888466 eV Core-core repulsion = 24281.616457 eV Total energy + Delta-G solvation = -4345.272009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.48586 -40.38565 -39.53710 -38.27724 -37.74110 -35.03770 -34.51597 -33.73094 -32.18645 -31.79498 -31.41041 -29.28591 -28.13414 -27.32161 -24.89703 -23.72641 -23.36478 -22.74506 -21.44714 -20.37821 -19.65544 -18.91130 -18.53953 -18.09192 -17.09550 -17.00477 -16.31959 -16.08735 -16.02750 -15.60349 -15.35644 -15.33148 -14.79974 -14.77403 -14.32707 -14.06699 -13.89750 -13.76466 -13.65538 -13.11139 -12.99125 -12.63103 -12.47510 -12.29077 -12.18093 -12.15781 -11.56759 -11.50582 -11.23669 -11.20765 -10.93609 -10.64355 -10.15996 -10.04955 -9.69213 -9.43402 -9.30033 -8.89569 -8.76329 -8.29810 -8.23788 -6.39879 -3.92387 0.43009 1.08883 1.32066 1.92018 2.30915 2.89314 2.99445 3.03777 3.11261 3.17195 3.29044 3.45760 3.57560 3.89866 4.03878 4.32604 4.47558 4.52881 4.54508 4.74278 4.78120 4.81031 4.95757 5.08803 5.12924 5.14485 5.20279 5.24725 5.42243 5.63716 5.71548 5.74760 5.78855 5.88516 5.91378 6.03286 6.16980 6.32491 6.51463 7.00131 7.22660 7.45108 7.75279 8.00872 8.28170 8.46530 8.82765 9.30496 9.64349 10.72355 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.002519 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.155597 B =11112.134194 C =13258.766122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.147 3.853 4 C -0.159 4.159 5 C -0.046 4.046 6 C -0.068 4.068 7 C 0.083 3.917 8 O -0.194 6.194 9 C 0.176 3.824 10 N -0.454 5.454 11 C -0.053 4.053 12 C 0.597 3.403 13 O -0.536 6.536 14 N -0.688 5.688 15 C 0.106 3.894 16 C 0.438 3.562 17 O -0.574 6.574 18 N -0.577 5.577 19 C -0.309 4.309 20 H 0.122 0.878 21 C 0.045 3.955 22 N -0.875 5.875 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C -0.002 4.002 28 C -0.209 4.209 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.257 0.743 35 H 0.421 0.579 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.374 0.626 39 H 0.275 0.725 40 H 0.130 0.870 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 -22.347 18.097 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.101 3.899 4 C -0.178 4.178 5 C -0.065 4.065 6 C -0.069 4.069 7 C 0.026 3.974 8 O -0.080 6.080 9 C -0.052 4.052 10 N -0.182 5.182 11 C -0.175 4.175 12 C 0.382 3.618 13 O -0.414 6.414 14 N -0.342 5.342 15 C -0.021 4.021 16 C 0.224 3.776 17 O -0.458 6.458 18 N -0.215 5.215 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.514 5.514 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C -0.021 4.021 28 C -0.228 4.228 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.272 0.728 35 H 0.260 0.740 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.207 0.793 39 H 0.086 0.914 40 H 0.148 0.852 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.119 -21.865 17.716 28.604 hybrid contribution -0.827 -0.724 -0.356 1.155 sum 4.292 -22.589 17.361 28.811 Atomic orbital electron populations 1.23123 0.77976 1.04132 1.01804 1.86046 1.21777 1.26908 1.88140 1.19231 0.92360 0.84198 0.94099 1.20238 0.91300 0.98348 1.07900 1.20992 0.99759 0.90342 0.95361 1.17306 0.92510 0.87017 1.10020 1.21680 0.89906 0.95173 0.90592 1.84489 1.43767 1.30600 1.49153 1.28054 1.00959 0.80880 0.95289 1.70739 1.06418 1.28971 1.12118 1.21962 1.02692 0.91071 1.01733 1.16547 0.81240 0.83542 0.80498 1.90837 1.49174 1.33622 1.67767 1.45519 1.41227 1.13567 1.33893 1.21029 0.93345 0.97393 0.90356 1.19608 0.84884 0.89198 0.83958 1.90565 1.44397 1.47525 1.63287 1.42112 1.36198 1.12332 1.30833 1.19448 1.22850 0.86935 1.14540 0.86055 1.25065 0.97621 0.96673 0.96572 1.69619 1.37402 1.19407 1.24930 0.86672 0.81460 0.81526 0.79832 1.19417 1.19994 1.19233 1.20840 0.92214 0.97717 0.91279 1.21107 1.00392 0.91642 1.09656 0.92407 0.92175 0.88095 0.84591 0.84881 0.72761 0.73959 0.89432 0.89455 0.79272 0.91402 0.85163 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.94 10.49 -19.14 -0.20 -3.14 16 3 C 0.15 1.50 6.69 -39.07 -0.26 1.24 16 4 C -0.16 -1.53 9.97 -39.50 -0.39 -1.93 16 5 C -0.05 -0.47 9.78 -39.18 -0.38 -0.85 16 6 C -0.07 -0.81 5.27 -104.99 -0.55 -1.36 16 7 C 0.08 1.05 6.84 -35.68 -0.24 0.81 16 8 O -0.19 -2.03 10.75 4.98 0.05 -1.98 16 9 C 0.18 1.63 13.16 51.94 0.68 2.32 16 10 N -0.45 -6.13 11.04 -11.04 -0.12 -6.25 16 11 C -0.05 -0.78 7.04 -82.34 -0.58 -1.36 16 12 C 0.60 9.85 7.74 -12.70 -0.10 9.76 16 13 O -0.54 -9.29 13.83 5.22 0.07 -9.22 16 14 N -0.69 -12.01 5.52 -62.69 -0.35 -12.36 16 15 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 16 C 0.44 9.81 7.85 -10.98 -0.09 9.73 16 17 O -0.57 -14.96 15.24 5.55 0.08 -14.87 16 18 N -0.58 -13.51 5.09 -10.96 -0.06 -13.57 16 19 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 22 N -0.87 -25.08 13.96 55.50 0.77 -24.31 16 23 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 27 C 0.00 -0.03 7.72 -39.18 -0.30 -0.33 16 28 C -0.21 -2.14 9.02 -39.49 -0.36 -2.50 16 29 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 30 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.26 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.42 7.78 7.17 -40.82 -0.29 7.48 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 39 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.13 1.56 7.60 -52.49 -0.40 1.17 16 41 H 0.14 1.09 6.27 -52.49 -0.33 0.76 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -35.04 363.49 -4.98 -40.03 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -4.14 Total: 15.03 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -1.86 Total: 10.87 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.25 Total: -56.48 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: 0.01 Total: -29.22 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.04 -4.98 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344977174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.719 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds