Wall clock time and date at job start Wed Apr 1 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35809 * 117.00188 * 2 1 4 4 C 1.38932 * 119.90091 * 180.02562 * 3 2 1 5 5 C 1.37757 * 120.09885 * 180.02562 * 4 3 2 6 6 C 1.39777 * 119.90123 * 359.97365 * 5 4 3 7 7 C 1.47466 * 120.10125 * 179.97438 * 6 5 4 8 8 O 1.34777 * 126.77057 * 309.59429 * 7 6 5 9 9 C 1.34084 * 108.24382 * 180.22889 * 8 7 6 10 10 N 1.29897 * 109.80252 * 359.77058 * 9 8 7 11 11 C 1.35935 * 108.74679 * 359.97438 * 10 9 8 12 12 C 1.47027 * 126.62952 * 179.97438 * 11 10 9 13 13 O 1.21662 * 120.00293 * 174.94320 * 12 11 10 14 14 N 1.34781 * 120.00033 * 354.95486 * 12 11 10 15 15 C 1.46501 * 120.00099 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46717 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00421 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99459 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99539 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00325 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99788 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00158 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99916 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46765 * 90.00226 * 23 21 19 25 25 H 1.48501 * 109.47130 * 209.99907 * 23 21 19 26 26 H 1.48501 * 109.47118 * 329.99943 * 23 21 19 27 27 C 1.39770 * 119.79936 * 0.25583 * 6 5 4 28 28 C 1.37769 * 119.89874 * 359.48899 * 27 6 5 29 29 H 1.08994 * 109.47194 * 299.99785 * 1 2 3 30 30 H 1.09001 * 109.47285 * 60.00043 * 1 2 3 31 31 H 1.09005 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.94877 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.05094 * 179.97438 * 5 4 3 34 34 H 1.08000 * 125.10202 * 179.73986 * 9 8 7 35 35 H 0.97000 * 119.99803 * 359.97438 * 14 12 11 36 36 H 1.08992 * 109.47071 * 299.99728 * 15 14 12 37 37 H 1.09003 * 109.47053 * 59.99877 * 15 14 12 38 38 H 0.96996 * 120.00517 * 0.02562 * 18 16 15 39 39 H 0.97000 * 119.99786 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.05172 * 179.72139 * 27 6 5 41 41 H 1.07995 * 119.94935 * 180.23240 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 3.4331 1.2803 -0.0005 5 6 4.0628 2.5055 0.0000 6 6 3.3036 3.6792 0.0005 7 6 3.9731 4.9931 0.0017 8 8 4.9521 5.3990 0.8342 9 6 5.2840 6.6570 0.5101 10 7 4.5612 7.0587 -0.4916 11 6 3.7220 6.0532 -0.8557 12 6 2.7339 6.0860 -1.9440 13 8 2.1061 5.0828 -2.2261 14 7 2.5238 7.2274 -2.6293 15 6 1.5397 7.2599 -3.7141 16 6 1.4972 8.6425 -4.3123 17 8 2.2182 9.5146 -3.8759 18 7 0.6585 8.9094 -5.3330 19 6 0.6194 10.1673 -5.8770 20 1 1.2609 10.9441 -5.4878 21 6 -0.2456 10.4428 -6.9290 22 7 -0.2827 11.6483 -7.4507 23 14 -1.3556 9.0993 -7.6016 24 1 -2.6454 9.1084 -6.8656 25 1 -1.6076 9.3418 -9.0449 26 1 -0.6964 7.7799 -7.4290 27 6 1.9080 3.6036 0.0059 28 6 1.2868 2.3739 0.0000 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 4.0189 0.3730 -0.0005 33 1 5.1415 2.5593 0.0000 34 1 6.0387 7.2480 1.0077 35 1 3.0242 8.0273 -2.4042 36 1 1.8216 6.5398 -4.4821 37 1 0.5560 7.0045 -3.3200 38 1 0.0821 8.2119 -5.6823 39 1 -0.8868 11.8406 -8.1848 40 1 1.3174 4.5078 0.0109 41 1 0.2085 2.3146 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344977174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:37 Heat of formation + Delta-G solvation = -77.095279 kcal Electronic energy + Delta-G solvation = -28628.161049 eV Core-core repulsion = 24281.616457 eV Total energy + Delta-G solvation = -4346.544593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.36223 -41.11848 -40.96069 -39.94193 -38.48309 -36.32376 -35.96305 -35.31584 -33.84943 -33.01117 -32.17116 -30.32148 -29.32271 -28.04496 -26.57174 -24.95244 -24.14338 -23.57559 -22.32868 -21.51290 -21.47498 -20.59384 -19.56056 -19.15272 -18.07506 -17.91649 -17.48174 -17.09299 -16.95376 -16.76901 -16.76235 -16.67679 -16.28130 -15.64003 -15.38808 -15.33630 -15.20222 -14.84218 -14.64306 -14.41923 -14.29386 -14.02736 -13.72026 -13.66560 -13.36264 -12.97717 -12.84439 -12.48691 -12.45638 -12.20472 -12.00661 -11.95393 -11.79507 -11.59409 -11.36517 -10.68860 -10.39618 -10.33287 -10.18668 -10.04194 -9.04661 -8.46239 -6.08696 -0.46248 0.32304 0.46163 1.01922 1.30551 1.33394 1.43350 1.45636 1.76884 1.92710 2.16165 2.20176 2.29926 2.65573 2.81975 3.08540 3.09583 3.46708 3.68090 3.75599 3.85079 3.98855 4.15402 4.27793 4.29662 4.37002 4.37468 4.40200 4.41887 4.51448 4.62045 4.75626 4.95865 5.09484 5.14208 5.15242 5.26448 5.37966 5.47332 5.59253 5.86683 6.23170 6.33532 6.47528 6.53015 6.76944 6.98242 7.27266 7.76918 8.70324 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.002519 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.155597 B =11112.134194 C =13258.766122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.143 3.857 4 C -0.162 4.162 5 C -0.045 4.045 6 C -0.090 4.090 7 C 0.093 3.907 8 O -0.188 6.188 9 C 0.204 3.796 10 N -0.497 5.497 11 C -0.086 4.086 12 C 0.598 3.402 13 O -0.547 6.547 14 N -0.698 5.698 15 C 0.119 3.881 16 C 0.443 3.557 17 O -0.615 6.615 18 N -0.576 5.576 19 C -0.333 4.333 20 H 0.061 0.939 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.961 3.039 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.232 1.232 27 C -0.017 4.017 28 C -0.213 4.213 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.308 0.692 35 H 0.415 0.585 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.393 0.607 39 H 0.282 0.718 40 H 0.119 0.881 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -25.885 18.876 32.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.097 3.903 4 C -0.181 4.181 5 C -0.063 4.063 6 C -0.091 4.091 7 C 0.036 3.964 8 O -0.075 6.075 9 C -0.024 4.024 10 N -0.225 5.225 11 C -0.205 4.205 12 C 0.385 3.615 13 O -0.426 6.426 14 N -0.351 5.351 15 C -0.008 4.008 16 C 0.230 3.770 17 O -0.501 6.501 18 N -0.216 5.216 19 C -0.461 4.461 20 H 0.080 0.920 21 C -0.208 4.208 22 N -0.565 5.565 23 Si 0.780 3.220 24 H -0.179 1.179 25 H -0.198 1.198 26 H -0.155 1.155 27 C -0.035 4.035 28 C -0.231 4.231 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.323 0.677 35 H 0.253 0.747 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.229 0.771 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.702 -25.432 18.505 31.801 hybrid contribution -0.596 0.395 -0.454 0.847 sum 4.106 -25.036 18.051 31.137 Atomic orbital electron populations 1.23403 0.76264 1.05844 1.02395 1.86041 1.23603 1.26411 1.87869 1.19412 0.92809 0.84514 0.93600 1.20533 0.91471 0.98947 1.07108 1.21208 1.00664 0.89837 0.94596 1.17494 0.92819 0.87345 1.11473 1.21769 0.89724 0.94966 0.89988 1.84533 1.43195 1.31150 1.48588 1.29218 0.99662 0.80157 0.93339 1.70711 1.07831 1.29606 1.14342 1.21749 1.03737 0.92537 1.02489 1.16762 0.81324 0.82827 0.80583 1.90813 1.49781 1.33723 1.68281 1.45572 1.41458 1.13798 1.34267 1.20968 0.94989 0.93853 0.90997 1.20496 0.83063 0.90664 0.82741 1.90549 1.45696 1.49600 1.64231 1.41894 1.37120 1.11301 1.31257 1.19027 1.23320 0.87779 1.16022 0.92045 1.26098 0.98910 0.99776 0.96064 1.69785 1.38680 1.22340 1.25740 0.85423 0.79029 0.78829 0.78689 1.17921 1.19788 1.15522 1.20858 0.92368 0.97953 0.92338 1.21282 1.01372 0.91195 1.09293 0.91358 0.92021 0.85931 0.82624 0.83033 0.67695 0.74734 0.87338 0.86937 0.77110 0.90878 0.86253 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.43 10.49 -91.40 -0.96 -6.39 16 3 C 0.14 2.68 6.69 22.60 0.15 2.83 16 4 C -0.16 -2.82 9.97 22.32 0.22 -2.60 16 5 C -0.05 -0.83 9.78 22.53 0.22 -0.61 16 6 C -0.09 -2.09 5.27 -20.10 -0.11 -2.19 16 7 C 0.09 2.27 6.84 24.80 0.17 2.44 16 8 O -0.19 -3.59 10.75 -5.08 -0.05 -3.64 16 9 C 0.20 3.33 13.16 130.53 1.72 5.05 16 10 N -0.50 -13.08 11.04 -303.73 -3.35 -16.43 16 11 C -0.09 -2.49 7.04 40.91 0.29 -2.20 16 12 C 0.60 19.65 7.74 86.55 0.67 20.32 16 13 O -0.55 -18.62 13.83 -4.23 -0.06 -18.67 16 14 N -0.70 -24.33 5.52 -470.47 -2.60 -26.93 16 15 C 0.12 4.06 6.15 85.63 0.53 4.59 16 16 C 0.44 20.03 7.85 87.66 0.69 20.72 16 17 O -0.61 -33.37 15.24 -3.05 -0.05 -33.41 16 18 N -0.58 -26.91 5.09 -306.99 -1.56 -28.48 16 19 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 20 H 0.06 4.20 7.39 -2.91 -0.02 4.17 16 21 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 22 N -0.93 -54.82 13.96 21.66 0.30 -54.52 16 23 Si 0.96 38.15 27.74 68.60 1.90 40.05 16 24 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 26 H -0.23 -7.83 6.52 99.48 0.65 -7.19 16 27 C -0.02 -0.39 7.72 22.53 0.17 -0.21 16 28 C -0.21 -4.12 9.02 22.33 0.20 -3.92 16 29 H 0.07 0.51 7.65 -2.39 -0.02 0.49 16 30 H 0.06 0.57 7.65 -2.39 -0.02 0.56 16 31 H 0.12 0.60 8.14 -2.38 -0.02 0.59 16 32 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.31 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.41 15.72 7.17 -92.71 -0.67 15.06 16 36 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.39 15.24 5.76 -92.71 -0.53 14.71 16 39 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.12 2.92 7.60 -2.91 -0.02 2.90 16 41 H 0.15 2.24 6.27 -2.91 -0.02 2.23 16 Total: -1.00 -81.35 363.49 0.79 -80.55 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -0.13 Total: 40.70 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 7.36 Total: 27.17 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -7.21 Total: -126.36 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -1.12 Total: -62.12 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.90 Total: 40.05 kcal Total: -81.35 0.79 -80.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344977174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.457 kcal (2) G-P(sol) polarization free energy of solvation -81.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds