Wall clock time and date at job start Wed Apr 1 2020 03:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99832 * 2 1 4 4 O 1.20821 * 120.00067 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99561 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46656 * 180.02562 * 5 3 2 7 7 C 1.37106 * 120.00045 * 269.99789 * 6 5 3 8 8 H 1.08001 * 120.00189 * 203.00168 * 7 6 5 9 9 C 1.38950 * 119.99731 * 22.99848 * 7 6 5 10 10 N 1.31414 * 119.99952 * 351.25508 * 9 7 6 11 11 Si 1.86797 * 119.99885 * 171.25769 * 9 7 6 12 12 H 1.48500 * 109.47280 * 90.00162 * 11 9 7 13 13 H 1.48504 * 109.47321 * 209.99909 * 11 9 7 14 14 H 1.48499 * 109.47172 * 329.99910 * 11 9 7 15 15 C 1.34777 * 120.00280 * 90.00032 * 6 5 3 16 16 O 1.21292 * 119.99667 * 5.01652 * 15 6 5 17 17 C 1.50702 * 120.00067 * 185.01616 * 15 6 5 18 18 N 1.46494 * 109.46813 * 174.78388 * 17 15 6 19 19 C 1.34783 * 119.99546 * 179.97438 * 18 17 15 20 20 O 1.21540 * 120.00386 * 359.97438 * 19 18 17 21 21 C 1.47912 * 119.99479 * 179.97438 * 19 18 17 22 22 C 1.39631 * 119.99117 * 179.97438 * 21 19 18 23 23 C 1.37734 * 120.00644 * 179.97438 * 22 21 19 24 24 C 1.39673 * 119.99108 * 0.02562 * 23 22 21 25 25 C 1.43201 * 120.00259 * 179.97438 * 24 23 22 26 26 N 9.80964 * 125.55877 * 226.31638 * 15 1 2 27 27 C 1.39675 * 119.99294 * 0.25444 * 24 23 22 28 28 C 1.37734 * 119.98989 * 359.50647 * 27 24 23 29 29 H 1.09006 * 109.46826 * 299.99299 * 1 2 3 30 30 H 1.09004 * 109.47475 * 59.99493 * 1 2 3 31 31 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47368 * 60.00468 * 5 3 2 33 33 H 1.08995 * 109.46915 * 299.99652 * 5 3 2 34 34 H 0.97006 * 119.99430 * 185.00757 * 10 9 7 35 35 H 1.08995 * 109.47083 * 54.78197 * 17 15 6 36 36 H 1.09006 * 109.47045 * 294.78115 * 17 15 6 37 37 H 0.97003 * 120.00657 * 0.02562 * 18 17 15 38 38 H 1.07994 * 119.99999 * 359.97438 * 22 21 19 39 39 H 1.08000 * 120.00005 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00828 * 179.74900 * 27 24 23 41 41 H 1.07997 * 119.99681 * 180.21692 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1756 3.3379 -1.1869 8 1 4.8140 4.2082 -1.2238 9 6 3.5508 2.8851 -2.3424 10 7 2.9157 1.7345 -2.3383 11 14 3.6135 3.9117 -3.9017 12 1 4.8088 3.5318 -4.6968 13 1 2.3877 3.6688 -4.7040 14 1 3.6938 5.3507 -3.5440 15 6 4.1732 3.3252 1.1677 16 8 4.0908 2.7203 2.2157 17 6 4.4898 4.7986 1.1709 18 7 4.5287 5.2866 2.5517 19 6 4.7962 6.5840 2.8005 20 8 5.0056 7.3489 1.8795 21 6 4.8348 7.0768 4.1946 22 6 5.1125 8.4207 4.4524 23 6 5.1481 8.8800 5.7504 24 6 4.9068 8.0012 6.8088 25 6 4.9443 8.4784 8.1585 26 7 4.9754 8.8592 9.2275 27 6 4.6348 6.6557 6.5511 28 6 4.5946 6.1979 5.2526 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7806 0.8891 34 1 2.5421 1.3839 -3.1620 35 1 3.7208 5.3367 0.6169 36 1 5.4591 4.9630 0.7001 37 1 4.3626 4.6760 3.2868 38 1 5.2994 9.1001 3.6340 39 1 5.3632 9.9195 5.9497 40 1 4.4523 5.9751 7.3695 41 1 4.3808 5.1583 5.0530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353424014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:47 Heat of formation + Delta-G solvation = -78.888610 kcal Electronic energy + Delta-G solvation = -28979.324359 eV Core-core repulsion = 24632.702001 eV Total energy + Delta-G solvation = -4346.622357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40010 -39.60178 -38.87418 -38.19578 -36.65103 -35.69496 -34.76983 -34.15679 -31.95084 -31.72943 -31.44297 -29.17171 -27.41925 -26.18192 -25.04116 -24.19822 -22.94920 -20.82359 -20.36514 -19.52346 -19.27026 -18.43299 -17.11611 -16.65117 -16.25342 -15.99178 -15.63191 -15.28200 -15.22866 -15.15796 -14.93522 -14.62346 -14.39247 -14.31114 -13.97143 -13.94815 -13.85782 -13.24507 -13.10146 -12.76487 -12.73938 -12.43870 -12.41651 -12.39996 -11.77523 -11.59557 -11.44455 -11.35852 -11.28999 -10.93262 -10.70928 -10.51041 -9.95775 -9.91004 -9.67313 -9.44077 -9.32738 -9.13176 -8.92702 -8.82607 -8.15053 -6.60073 -4.24953 0.10562 0.96289 2.29180 2.31115 2.98779 3.08898 3.10838 3.14834 3.20044 3.36805 3.48262 3.62369 3.66769 3.83690 3.99611 4.42769 4.47635 4.53114 4.69532 4.87442 4.91101 5.06569 5.27574 5.57120 5.63644 5.69203 5.72757 5.78122 5.86485 5.87904 5.96496 6.01766 6.13520 6.18718 6.33632 6.36907 6.54932 6.76822 7.10783 7.18019 7.33478 7.47827 7.68787 8.05745 8.29964 8.79009 9.00019 9.12245 9.49247 10.40650 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002532 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.523762 B =11056.187400 C =12499.424052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.372 6.372 3 C 0.491 3.509 4 O -0.514 6.514 5 C 0.152 3.848 6 N -0.421 5.421 7 C -0.335 4.335 8 H 0.107 0.893 9 C 0.047 3.953 10 N -0.880 5.880 11 Si 0.934 3.066 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.265 1.265 15 C 0.460 3.540 16 O -0.605 6.605 17 C 0.120 3.880 18 N -0.703 5.703 19 C 0.550 3.450 20 O -0.536 6.536 21 C -0.094 4.094 22 C -0.063 4.063 23 C -0.079 4.079 24 C -0.013 4.013 25 C 0.256 3.744 26 N -0.415 5.415 27 C -0.076 4.076 28 C -0.086 4.086 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.276 0.724 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 3.755 8.247 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.289 6.289 3 C 0.333 3.667 4 O -0.400 6.400 5 C 0.027 3.973 6 N -0.138 5.138 7 C -0.462 4.462 8 H 0.124 0.876 9 C -0.157 4.157 10 N -0.519 5.519 11 Si 0.760 3.240 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.190 1.190 15 C 0.249 3.751 16 O -0.492 6.492 17 C -0.007 4.007 18 N -0.356 5.356 19 C 0.336 3.664 20 O -0.415 6.415 21 C -0.098 4.098 22 C -0.082 4.082 23 C -0.099 4.099 24 C -0.017 4.017 25 C -0.060 4.060 26 N -0.090 5.090 27 C -0.096 4.096 28 C -0.105 4.105 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.158 0.842 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.247 0.753 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.797 4.758 9.567 10.835 hybrid contribution -0.527 -0.052 -1.169 1.284 sum 1.269 4.706 8.398 9.710 Atomic orbital electron populations 1.22934 0.78773 1.01861 1.01532 1.86460 1.21550 1.35358 1.85570 1.23881 0.92268 0.80482 0.70073 1.90512 1.66720 1.36455 1.46318 1.20697 0.87108 0.85110 1.04351 1.43247 1.56841 1.08565 1.05175 1.19743 1.28206 1.13281 0.84964 0.87559 1.25331 0.93779 0.96198 1.00433 1.69601 1.35639 1.17771 1.28882 0.85790 0.77859 0.80233 0.80078 1.20113 1.20691 1.18959 1.19994 0.82787 0.88506 0.83834 1.90516 1.59118 1.68126 1.31482 1.20955 1.03877 0.93601 0.82230 1.45743 1.70253 1.09552 1.10090 1.18149 0.77771 0.82227 0.88276 1.90789 1.49557 1.55663 1.45462 1.20300 1.01273 0.94854 0.93406 1.21240 0.95537 0.94575 0.96816 1.21151 0.97965 0.99683 0.91109 1.16150 1.05530 0.94398 0.85574 1.25674 0.93840 0.93697 0.92773 1.81235 1.08436 1.07816 1.11559 1.21126 0.97510 0.93516 0.97449 1.21410 0.97228 1.00361 0.91521 0.93186 0.92744 0.89544 0.84178 0.90231 0.91309 0.88340 0.89129 0.75279 0.83360 0.84298 0.84242 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.56 101.05 1.07 1.79 16 2 O -0.37 -7.65 10.57 -39.26 -0.41 -8.07 16 3 C 0.49 11.50 5.92 36.01 0.21 11.72 16 4 O -0.51 -13.48 15.94 -18.75 -0.30 -13.78 16 5 C 0.15 3.43 5.29 -5.19 -0.03 3.40 16 6 N -0.42 -9.75 2.11 -116.09 -0.25 -9.99 16 7 C -0.34 -7.81 9.00 -14.93 -0.13 -7.94 16 8 H 0.11 2.31 6.72 -52.49 -0.35 1.96 16 9 C 0.05 1.10 5.41 -17.47 -0.09 1.01 16 10 N -0.88 -21.24 8.21 55.50 0.46 -20.78 16 11 Si 0.93 18.80 29.56 -169.99 -5.03 13.77 16 12 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 15 C 0.46 10.02 7.69 -10.98 -0.08 9.94 16 16 O -0.61 -13.72 15.23 5.55 0.08 -13.64 16 17 C 0.12 2.24 4.70 -5.20 -0.02 2.22 16 18 N -0.70 -11.15 5.47 -62.41 -0.34 -11.50 16 19 C 0.55 8.25 7.77 -12.30 -0.10 8.15 16 20 O -0.54 -9.65 16.33 5.33 0.09 -9.56 16 21 C -0.09 -1.05 5.88 -104.90 -0.62 -1.67 16 22 C -0.06 -0.59 9.58 -39.25 -0.38 -0.97 16 23 C -0.08 -0.59 9.73 -39.23 -0.38 -0.98 16 24 C -0.01 -0.10 5.73 -106.90 -0.61 -0.72 16 25 C 0.26 2.43 15.32 -22.50 -0.34 2.09 16 26 N -0.42 -4.91 18.53 41.81 0.77 -4.13 16 27 C -0.08 -0.58 9.74 -39.23 -0.38 -0.96 16 28 C -0.09 -0.79 9.52 -39.25 -0.37 -1.16 16 29 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.05 0.94 8.13 -51.93 -0.42 0.51 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.14 3.18 6.28 -51.93 -0.33 2.85 16 33 H 0.08 1.68 7.36 -51.93 -0.38 1.30 16 34 H 0.28 6.43 8.32 -40.82 -0.34 6.09 16 35 H 0.10 1.96 8.03 -51.93 -0.42 1.54 16 36 H 0.09 1.63 7.75 -51.93 -0.40 1.22 16 37 H 0.41 6.02 5.47 -40.82 -0.22 5.80 16 38 H 0.15 1.37 7.64 -52.49 -0.40 0.96 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.14 1.19 6.38 -52.49 -0.34 0.86 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -31.00 369.60 -5.71 -36.71 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.09 Total: 9.50 kcal Atomic # 6 Polarization: 28.18 SS G_CDS: -2.27 Total: 25.91 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.64 Total: -46.41 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.54 Total: -45.05 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.00 -5.71 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353424014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.183 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds