Wall clock time and date at job start Wed Apr 1 2020 03:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99832 * 2 1 4 4 O 1.20821 * 120.00067 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99561 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46656 * 180.02562 * 5 3 2 7 7 C 1.37106 * 120.00045 * 269.99789 * 6 5 3 8 8 H 1.08001 * 120.00189 * 203.00168 * 7 6 5 9 9 C 1.38950 * 119.99731 * 22.99848 * 7 6 5 10 10 N 1.31414 * 119.99952 * 351.25508 * 9 7 6 11 11 Si 1.86797 * 119.99885 * 171.25769 * 9 7 6 12 12 H 1.48500 * 109.47280 * 90.00162 * 11 9 7 13 13 H 1.48504 * 109.47321 * 209.99909 * 11 9 7 14 14 H 1.48499 * 109.47172 * 329.99910 * 11 9 7 15 15 C 1.34777 * 120.00280 * 90.00032 * 6 5 3 16 16 O 1.21292 * 119.99667 * 5.01652 * 15 6 5 17 17 C 1.50702 * 120.00067 * 185.01616 * 15 6 5 18 18 N 1.46494 * 109.46813 * 174.78388 * 17 15 6 19 19 C 1.34783 * 119.99546 * 179.97438 * 18 17 15 20 20 O 1.21540 * 120.00386 * 359.97438 * 19 18 17 21 21 C 1.47912 * 119.99479 * 179.97438 * 19 18 17 22 22 C 1.39631 * 119.99117 * 179.97438 * 21 19 18 23 23 C 1.37734 * 120.00644 * 179.97438 * 22 21 19 24 24 C 1.39673 * 119.99108 * 0.02562 * 23 22 21 25 25 C 1.43201 * 120.00259 * 179.97438 * 24 23 22 26 26 N 9.80964 * 125.55877 * 226.31638 * 15 1 2 27 27 C 1.39675 * 119.99294 * 0.25444 * 24 23 22 28 28 C 1.37734 * 119.98989 * 359.50647 * 27 24 23 29 29 H 1.09006 * 109.46826 * 299.99299 * 1 2 3 30 30 H 1.09004 * 109.47475 * 59.99493 * 1 2 3 31 31 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47368 * 60.00468 * 5 3 2 33 33 H 1.08995 * 109.46915 * 299.99652 * 5 3 2 34 34 H 0.97006 * 119.99430 * 185.00757 * 10 9 7 35 35 H 1.08995 * 109.47083 * 54.78197 * 17 15 6 36 36 H 1.09006 * 109.47045 * 294.78115 * 17 15 6 37 37 H 0.97003 * 120.00657 * 0.02562 * 18 17 15 38 38 H 1.07994 * 119.99999 * 359.97438 * 22 21 19 39 39 H 1.08000 * 120.00005 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00828 * 179.74900 * 27 24 23 41 41 H 1.07997 * 119.99681 * 180.21692 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1756 3.3379 -1.1869 8 1 4.8140 4.2082 -1.2238 9 6 3.5508 2.8851 -2.3424 10 7 2.9157 1.7345 -2.3383 11 14 3.6135 3.9117 -3.9017 12 1 4.8088 3.5318 -4.6968 13 1 2.3877 3.6688 -4.7040 14 1 3.6938 5.3507 -3.5440 15 6 4.1732 3.3252 1.1677 16 8 4.0908 2.7203 2.2157 17 6 4.4898 4.7986 1.1709 18 7 4.5287 5.2866 2.5517 19 6 4.7962 6.5840 2.8005 20 8 5.0056 7.3489 1.8795 21 6 4.8348 7.0768 4.1946 22 6 5.1125 8.4207 4.4524 23 6 5.1481 8.8800 5.7504 24 6 4.9068 8.0012 6.8088 25 6 4.9443 8.4784 8.1585 26 7 4.9754 8.8592 9.2275 27 6 4.6348 6.6557 6.5511 28 6 4.5946 6.1979 5.2526 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7806 0.8891 34 1 2.5421 1.3839 -3.1620 35 1 3.7208 5.3367 0.6169 36 1 5.4591 4.9630 0.7001 37 1 4.3626 4.6760 3.2868 38 1 5.2994 9.1001 3.6340 39 1 5.3632 9.9195 5.9497 40 1 4.4523 5.9751 7.3695 41 1 4.3808 5.1583 5.0530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353424014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:46 Heat of formation + Delta-G solvation = -97.360127 kcal Electronic energy + Delta-G solvation = -28980.125344 eV Core-core repulsion = 24632.702001 eV Total energy + Delta-G solvation = -4347.423342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57109 -41.18380 -40.25371 -39.50033 -37.50218 -37.39388 -36.55376 -35.54807 -33.53642 -32.80357 -32.14749 -30.78650 -28.82187 -27.71197 -26.49871 -25.41260 -23.66170 -22.25774 -21.77062 -21.24893 -20.01242 -19.76108 -18.69957 -18.37279 -17.78327 -17.31875 -17.22045 -16.86177 -16.63092 -16.26902 -16.11078 -15.82375 -15.66788 -15.51715 -15.15531 -15.06392 -14.64947 -14.48131 -14.28525 -14.25007 -14.00604 -13.91480 -13.52305 -13.30349 -13.20851 -13.14313 -12.98770 -12.86844 -12.66079 -12.40903 -12.14177 -12.12091 -11.56019 -11.48980 -11.17732 -10.93412 -10.67393 -10.31473 -10.09168 -10.00686 -9.92391 -8.37543 -6.06473 -0.67731 0.30658 1.35439 1.40615 1.47622 1.55301 1.56423 1.65436 1.81036 1.96806 2.16695 2.21431 2.34076 2.72480 2.87261 2.90040 3.10103 3.62528 3.79811 3.87319 4.04925 4.19109 4.31707 4.35517 4.37299 4.42207 4.45513 4.57682 4.59686 4.63361 4.74106 4.96152 4.96540 5.05171 5.17819 5.20687 5.29530 5.40884 5.60637 5.65991 5.73877 6.26429 6.36384 6.47780 6.99798 7.08584 7.22515 7.37043 7.72695 8.62705 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002532 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.523762 B =11056.187400 C =12499.424052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.492 3.508 4 O -0.549 6.549 5 C 0.151 3.849 6 N -0.434 5.434 7 C -0.348 4.348 8 H 0.117 0.883 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.993 3.007 12 H -0.263 1.263 13 H -0.291 1.291 14 H -0.265 1.265 15 C 0.456 3.544 16 O -0.616 6.616 17 C 0.130 3.870 18 N -0.702 5.702 19 C 0.551 3.449 20 O -0.571 6.571 21 C -0.111 4.111 22 C -0.065 4.065 23 C -0.064 4.064 24 C -0.008 4.008 25 C 0.280 3.720 26 N -0.454 5.454 27 C -0.064 4.064 28 C -0.084 4.084 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.274 0.726 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.414 0.586 38 H 0.148 0.852 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 4.154 9.168 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.290 6.290 3 C 0.336 3.664 4 O -0.439 6.439 5 C 0.026 3.974 6 N -0.152 5.152 7 C -0.474 4.474 8 H 0.134 0.866 9 C -0.195 4.195 10 N -0.539 5.539 11 Si 0.817 3.183 12 H -0.188 1.188 13 H -0.217 1.217 14 H -0.189 1.189 15 C 0.246 3.754 16 O -0.505 6.505 17 C 0.003 3.997 18 N -0.356 5.356 19 C 0.340 3.660 20 O -0.452 6.452 21 C -0.115 4.115 22 C -0.083 4.083 23 C -0.084 4.084 24 C -0.012 4.012 25 C -0.034 4.034 26 N -0.130 5.130 27 C -0.085 4.085 28 C -0.103 4.103 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.254 0.746 38 H 0.166 0.834 39 H 0.183 0.817 40 H 0.181 0.819 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.968 5.132 10.517 11.866 hybrid contribution -0.626 -0.231 -1.374 1.528 sum 1.342 4.901 9.143 10.460 Atomic orbital electron populations 1.23285 0.76342 1.04809 1.01124 1.86430 1.23909 1.33780 1.84926 1.24008 0.92591 0.80673 0.69118 1.90482 1.67524 1.37694 1.48156 1.20716 0.86973 0.85260 1.04480 1.43439 1.57189 1.08931 1.05624 1.20058 1.28530 1.13644 0.85195 0.86593 1.26069 0.93590 0.96976 1.02879 1.69687 1.36265 1.18704 1.29197 0.84907 0.77636 0.78791 0.76999 1.18819 1.21689 1.18910 1.20447 0.82029 0.89573 0.83361 1.90489 1.59455 1.68776 1.31731 1.20696 1.03602 0.91369 0.83984 1.45700 1.70723 1.10239 1.08960 1.18717 0.76307 0.81311 0.89683 1.90763 1.51116 1.56285 1.47016 1.20085 1.03932 0.96032 0.91444 1.21273 0.95579 0.93814 0.97674 1.21331 0.96357 1.00820 0.89911 1.16196 1.05363 0.94690 0.84942 1.25686 0.92623 0.92602 0.92531 1.81276 1.09845 1.09103 1.12762 1.21321 0.96067 0.93688 0.97391 1.21444 0.96994 1.00354 0.91519 0.92954 0.93836 0.84923 0.84629 0.89285 0.91557 0.89750 0.88473 0.74581 0.83440 0.81728 0.81869 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 10.56 113.37 1.20 2.41 16 2 O -0.37 -15.19 10.57 -51.43 -0.54 -15.74 16 3 C 0.49 23.25 5.92 71.24 0.42 23.68 16 4 O -0.55 -29.24 15.94 21.98 0.35 -28.89 16 5 C 0.15 6.87 5.29 85.63 0.45 7.32 16 6 N -0.43 -20.34 2.11 -639.59 -1.35 -21.69 16 7 C -0.35 -16.31 9.00 84.04 0.76 -15.56 16 8 H 0.12 5.06 6.72 -2.91 -0.02 5.04 16 9 C 0.01 0.30 5.41 84.93 0.46 0.76 16 10 N -0.90 -43.78 8.21 21.66 0.18 -43.60 16 11 Si 0.99 38.50 29.56 68.60 2.03 40.53 16 12 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 13 H -0.29 -11.64 7.11 99.48 0.71 -10.94 16 14 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 15 C 0.46 20.04 7.69 87.66 0.67 20.71 16 16 O -0.62 -27.96 15.23 -3.07 -0.05 -28.01 16 17 C 0.13 4.94 4.70 85.63 0.40 5.34 16 18 N -0.70 -22.24 5.47 -469.65 -2.57 -24.81 16 19 C 0.55 16.44 7.77 86.81 0.67 17.12 16 20 O -0.57 -20.71 16.33 -3.84 -0.06 -20.77 16 21 C -0.11 -2.35 5.88 -20.04 -0.12 -2.47 16 22 C -0.06 -1.11 9.58 22.49 0.22 -0.89 16 23 C -0.06 -0.79 9.73 22.50 0.22 -0.57 16 24 C -0.01 -0.11 5.73 -21.34 -0.12 -0.23 16 25 C 0.28 4.65 15.32 88.34 1.35 6.00 16 26 N -0.45 -9.94 18.53 18.99 0.35 -9.59 16 27 C -0.06 -0.80 9.74 22.50 0.22 -0.58 16 28 C -0.08 -1.37 9.52 22.49 0.21 -1.16 16 29 H 0.05 1.63 8.13 -2.38 -0.02 1.61 16 30 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 31 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.14 6.27 6.28 -2.39 -0.01 6.25 16 33 H 0.09 3.79 7.36 -2.39 -0.02 3.77 16 34 H 0.27 12.89 8.32 -92.70 -0.77 12.12 16 35 H 0.08 3.44 8.03 -2.39 -0.02 3.42 16 36 H 0.10 3.52 7.75 -2.38 -0.02 3.50 16 37 H 0.41 12.07 5.47 -92.71 -0.51 11.56 16 38 H 0.15 2.56 7.64 -2.91 -0.02 2.54 16 39 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.15 2.23 6.38 -2.91 -0.02 2.21 16 Total: -1.00 -67.12 369.60 5.96 -61.16 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.61 Total: 29.54 kcal Atomic # 6 Polarization: 54.85 SS G_CDS: 7.02 Total: 61.87 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -3.39 Total: -99.69 kcal Atomic # 8 Polarization: -93.11 SS G_CDS: -0.30 Total: -93.41 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -67.12 5.96 -61.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353424014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.200 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds