Wall clock time and date at job start Wed Apr 1 2020 03:19:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34234 * 116.99947 * 2 1
4 4 O 1.20822 * 120.00090 * 0.02562 * 3 2 1
5 5 C 1.50702 * 119.99997 * 179.72219 * 3 2 1
6 6 C 1.50698 * 109.47325 * 179.97438 * 5 3 2
7 7 C 1.34857 * 125.77616 * 94.69085 * 6 5 3
8 8 C 1.41421 * 108.08893 * 179.84752 * 7 6 5
9 9 O 1.21777 * 126.19224 * 180.14664 * 8 7 6
10 10 N 1.34874 * 107.61910 * 0.42205 * 8 7 6
11 11 C 1.39332 * 126.16108 * 179.72648 * 10 8 7
12 12 C 1.39181 * 119.92163 * 179.74530 * 11 10 8
13 13 C 1.37634 * 120.07763 * 179.76192 * 12 11 10
14 14 C 1.39825 * 119.91575 * 0.51846 * 13 12 11
15 15 C 1.47474 * 120.07283 * 179.72167 * 14 13 12
16 16 O 1.21620 * 119.99916 * 180.02562 * 15 14 13
17 17 N 1.34771 * 119.99799 * 0.02562 * 15 14 13
18 18 C 1.36901 * 119.99838 * 180.02562 * 17 15 14
19 19 H 1.07995 * 119.99828 * 0.02562 * 18 17 15
20 20 C 1.39027 * 119.99898 * 180.02562 * 18 17 15
21 21 N 1.31382 * 119.99785 * 180.02562 * 20 18 17
22 22 Si 1.86796 * 120.00079 * 0.02562 * 20 18 17
23 23 H 1.48494 * 109.47075 * 90.00020 * 22 20 18
24 24 H 1.48507 * 109.46927 * 210.00180 * 22 20 18
25 25 H 1.48500 * 109.47342 * 329.99929 * 22 20 18
26 26 C 1.39825 * 119.85259 * 359.73755 * 14 13 12
27 27 C 1.37633 * 119.91924 * 0.02562 * 26 14 13
28 28 N 1.36593 * 125.78025 * 275.00413 * 6 5 3
29 29 H 0.97007 * 125.91345 * 0.02562 * 28 6 5
30 30 H 1.08997 * 109.46765 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.46967 * 299.99772 * 1 2 3
32 32 H 1.09002 * 109.46640 * 59.99976 * 1 2 3
33 33 H 1.09001 * 109.47201 * 300.00712 * 5 3 2
34 34 H 1.09001 * 109.46880 * 60.00295 * 5 3 2
35 35 H 1.08000 * 125.95876 * 0.02562 * 7 6 5
36 36 H 1.08003 * 119.95911 * 0.02562 * 12 11 10
37 37 H 1.07994 * 120.03794 * 180.27792 * 13 12 11
38 38 H 0.96996 * 120.00238 * 0.02562 * 17 15 14
39 39 H 0.96997 * 119.99790 * 179.97438 * 21 20 18
40 40 H 1.08000 * 120.04131 * 179.97438 * 26 14 13
41 41 H 1.07997 * 119.96387 * 180.02562 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5663 1.2749 0.0063
6 6 3.9937 2.7201 0.0044
7 6 4.2983 3.4536 1.0942
8 6 4.6519 4.7535 0.6638
9 8 4.9874 5.6810 1.3779
10 7 4.5445 4.7818 -0.6804
11 6 4.7975 5.8779 -1.5025
12 6 4.6496 5.7603 -2.8814
13 6 4.8939 6.8424 -3.6961
14 6 5.3016 8.0578 -3.1377
15 6 5.5703 9.2177 -4.0079
16 8 5.9253 10.2740 -3.5208
17 7 5.4224 9.1071 -5.3429
18 6 5.6723 10.1837 -6.1508
19 1 5.9883 11.1214 -5.7183
20 6 5.5192 10.0697 -7.5279
21 7 5.7595 11.1028 -8.3032
22 14 4.9719 8.4479 -8.2758
23 1 3.4896 8.4161 -8.3583
24 1 5.5466 8.3122 -9.6384
25 1 5.4445 7.3260 -7.4253
26 6 5.4543 8.1708 -1.7524
27 6 5.2036 7.0860 -0.9433
28 7 4.1322 3.5104 -1.1011
29 1 3.9724 3.2387 -2.0185
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 3.9522 0.7827 0.8990
34 1 3.9599 0.7789 -0.8809
35 1 4.2787 3.1078 2.1172
36 1 4.3386 4.8201 -3.3123
37 1 4.7746 6.7517 -4.7656
38 1 5.1389 8.2647 -5.7313
39 1 5.6531 11.0232 -9.2640
40 1 5.7695 9.1080 -1.3179
41 1 5.3209 7.1726 0.1267
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000355711853.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:19:27
Heat of formation + Delta-G solvation = -30.262388 kcal
Electronic energy + Delta-G solvation = -28523.404179 eV
Core-core repulsion = 24178.890413 eV
Total energy + Delta-G solvation = -4344.513766 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-42.35766 -40.99089 -39.42705 -37.80841 -37.47094 -37.03182 -34.40229 -34.15299
-32.06495 -31.49502 -30.98361 -30.28207 -29.05098 -27.74213 -25.29860 -23.55751
-23.08605 -21.99364 -20.98662 -20.80356 -19.69976 -19.07106 -18.80899 -18.36667
-17.27165 -17.21937 -16.58827 -16.44479 -16.18044 -15.43349 -15.26894 -14.72020
-14.48965 -14.31972 -14.20531 -14.00437 -13.84171 -13.79484 -13.58327 -13.38650
-12.92537 -12.90794 -12.86493 -12.67917 -12.57119 -12.45658 -12.03631 -11.41569
-11.35765 -11.20735 -11.12742 -10.72008 -10.52570 -10.12329 -9.83393 -9.72058
-8.96850 -8.68393 -8.66351 -8.33503 -7.84776 -6.49330 -3.92451 0.63473
1.13104 1.33634 1.45056 1.52511 2.15684 2.89803 2.94433 3.00446
3.04047 3.28287 3.50812 3.65626 3.95132 4.12730 4.22470 4.32516
4.48559 4.54800 4.59406 4.62365 4.64413 4.80543 4.98562 5.06322
5.17358 5.18524 5.29086 5.39527 5.49768 5.71112 5.73322 5.76713
6.03174 6.11651 6.21381 6.41484 6.66678 6.78250 6.93106 7.05442
7.18940 7.41344 7.97351 8.01323 8.44192 8.79337 9.25541 9.71447
10.62508
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.014473 B = 0.002330 C = 0.002063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1934.227511 B =12012.383010 C =13567.036781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.357 6.357
3 C 0.459 3.541
4 O -0.488 6.488
5 C -0.056 4.056
6 C 0.192 3.808
7 C -0.315 4.315
8 C 0.533 3.467
9 O -0.527 6.527
10 N -0.344 5.344
11 C 0.155 3.845
12 C -0.159 4.159
13 C -0.080 4.080
14 C -0.109 4.109
15 C 0.476 3.524
16 O -0.577 6.577
17 N -0.570 5.570
18 C -0.298 4.298
19 H 0.125 0.875
20 C 0.042 3.958
21 N -0.865 5.865
22 Si 0.878 3.122
23 H -0.267 1.267
24 H -0.272 1.272
25 H -0.268 1.268
26 C -0.042 4.042
27 C -0.139 4.139
28 N -0.486 5.486
29 H 0.443 0.557
30 H 0.104 0.896
31 H 0.066 0.934
32 H 0.065 0.935
33 H 0.147 0.853
34 H 0.129 0.871
35 H 0.168 0.832
36 H 0.118 0.882
37 H 0.128 0.872
38 H 0.371 0.629
39 H 0.277 0.723
40 H 0.146 0.854
41 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.989 -30.196 13.764 34.133
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.274 6.274
3 C 0.300 3.700
4 O -0.374 6.374
5 C -0.094 4.094
6 C 0.075 3.925
7 C -0.346 4.346
8 C 0.332 3.668
9 O -0.405 6.405
10 N -0.157 5.157
11 C 0.062 3.938
12 C -0.179 4.179
13 C -0.100 4.100
14 C -0.114 4.114
15 C 0.265 3.735
16 O -0.462 6.462
17 N -0.207 5.207
18 C -0.426 4.426
19 H 0.143 0.857
20 C -0.163 4.163
21 N -0.503 5.503
22 Si 0.704 3.296
23 H -0.192 1.192
24 H -0.197 1.197
25 H -0.194 1.194
26 C -0.062 4.062
27 C -0.160 4.160
28 N -0.208 5.208
29 H 0.289 0.711
30 H 0.123 0.877
31 H 0.085 0.915
32 H 0.084 0.916
33 H 0.165 0.835
34 H 0.147 0.853
35 H 0.186 0.814
36 H 0.136 0.864
37 H 0.146 0.854
38 H 0.205 0.795
39 H 0.088 0.912
40 H 0.163 0.837
41 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -7.759 -28.383 14.078 32.618
hybrid contribution -0.839 -1.474 -1.532 2.285
sum -8.597 -29.856 12.546 33.507
Atomic orbital electron populations
1.23346 0.75399 1.04061 1.02979 1.86472 1.24084 1.32700 1.84132
1.23291 0.91363 0.81893 0.73482 1.90804 1.66836 1.36115 1.43601
1.20027 0.89195 0.91147 1.09079 1.19963 0.94781 0.91385 0.86361
1.21739 1.18998 0.94382 0.99503 1.17011 0.80528 0.90392 0.78855
1.90816 1.51461 1.42384 1.55831 1.45414 1.62068 1.00667 1.07513
1.17799 1.01465 0.85065 0.89444 1.20390 1.07003 0.99686 0.90838
1.21073 0.97584 0.91796 0.99542 1.20409 1.01715 0.94418 0.94832
1.17476 0.85938 0.87992 0.82081 1.90655 1.52246 1.29226 1.74028
1.42216 1.59569 1.12893 1.05999 1.19567 1.42260 0.92799 0.88003
0.85742 1.25128 0.97447 0.97812 0.95894 1.69604 1.45919 1.29542
1.05282 0.86681 0.79866 0.82978 0.80070 1.19209 1.19712 1.19379
1.21179 0.94860 0.98404 0.91756 1.21361 1.01873 0.90081 1.02673
1.43684 1.67907 1.00776 1.08450 0.71110 0.87715 0.91515 0.91646
0.83498 0.85289 0.81416 0.86375 0.85422 0.79499 0.91196 0.83667
0.82319
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.13 10.56 101.05 1.07 1.20 16
2 O -0.36 -1.78 10.57 -39.27 -0.41 -2.20 16
3 C 0.46 2.70 7.95 36.01 0.29 2.99 16
4 O -0.49 -4.94 15.78 -18.75 -0.30 -5.23 16
5 C -0.06 -0.15 6.35 -29.03 -0.18 -0.33 16
6 C 0.19 1.36 5.70 -81.67 -0.47 0.89 16
7 C -0.31 -3.13 10.73 -39.57 -0.42 -3.56 16
8 C 0.53 7.67 7.81 -15.00 -0.12 7.55 16
9 O -0.53 -9.33 15.20 5.12 0.08 -9.25 16
10 N -0.34 -4.48 3.76 -12.48 -0.05 -4.53 16
11 C 0.16 2.29 6.68 -83.75 -0.56 1.73 16
12 C -0.16 -2.12 9.64 -39.45 -0.38 -2.50 16
13 C -0.08 -1.27 9.53 -39.21 -0.37 -1.64 16
14 C -0.11 -2.10 5.88 -104.95 -0.62 -2.72 16
15 C 0.48 11.47 7.71 -12.50 -0.10 11.38 16
16 O -0.58 -16.09 15.91 5.26 0.08 -16.01 16
17 N -0.57 -13.81 5.03 -11.94 -0.06 -13.87 16
18 C -0.30 -8.34 10.16 -15.00 -0.15 -8.49 16
19 H 0.13 3.97 7.38 -52.49 -0.39 3.58 16
20 C 0.04 1.13 5.50 -17.45 -0.10 1.03 16
21 N -0.87 -24.55 13.96 55.50 0.77 -23.78 16
22 Si 0.88 18.70 27.74 -169.99 -4.71 13.98 16
23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16
24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16
25 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16
26 C -0.04 -0.75 9.58 -39.21 -0.38 -1.13 16
27 C -0.14 -2.29 9.36 -39.45 -0.37 -2.66 16
28 N -0.49 -4.12 6.94 33.68 0.23 -3.89 16
29 H 0.44 2.42 7.89 -182.58 -1.44 0.98 16
30 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16
31 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16
32 H 0.06 0.27 8.13 -51.93 -0.42 -0.16 16
33 H 0.15 -0.02 8.14 -51.93 -0.42 -0.44 16
34 H 0.13 -0.06 8.14 -51.93 -0.42 -0.48 16
35 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16
36 H 0.12 1.13 6.95 -52.48 -0.36 0.76 16
37 H 0.13 1.85 6.39 -52.49 -0.34 1.51 16
38 H 0.37 7.82 3.78 -40.82 -0.15 7.66 16
39 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16
40 H 0.15 2.63 7.64 -52.49 -0.40 2.23 16
41 H 0.16 2.69 5.44 -52.49 -0.29 2.41 16
LS Contribution 361.28 15.07 5.44 5.44
Total: -1.00 -38.67 361.28 -6.85 -45.52
By element:
Atomic # 1 Polarization: 15.13 SS G_CDS: -5.07 Total: 10.05 kcal
Atomic # 6 Polarization: 6.60 SS G_CDS: -2.86 Total: 3.74 kcal
Atomic # 7 Polarization: -46.96 SS G_CDS: 0.90 Total: -46.05 kcal
Atomic # 8 Polarization: -32.14 SS G_CDS: -0.55 Total: -32.69 kcal
Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.98 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -38.67 -6.85 -45.52 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000355711853.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.257 kcal
(2) G-P(sol) polarization free energy of solvation -38.671 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.413 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds