Wall clock time and date at job start Wed Apr 1 2020 03:19:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34234 * 116.99947 * 2 1
4 4 O 1.20822 * 120.00090 * 0.02562 * 3 2 1
5 5 C 1.50702 * 119.99997 * 179.72219 * 3 2 1
6 6 C 1.50698 * 109.47325 * 179.97438 * 5 3 2
7 7 C 1.34857 * 125.77616 * 94.69085 * 6 5 3
8 8 C 1.41421 * 108.08893 * 179.84752 * 7 6 5
9 9 O 1.21777 * 126.19224 * 180.14664 * 8 7 6
10 10 N 1.34874 * 107.61910 * 0.42205 * 8 7 6
11 11 C 1.39332 * 126.16108 * 179.72648 * 10 8 7
12 12 C 1.39181 * 119.92163 * 179.74530 * 11 10 8
13 13 C 1.37634 * 120.07763 * 179.76192 * 12 11 10
14 14 C 1.39825 * 119.91575 * 0.51846 * 13 12 11
15 15 C 1.47474 * 120.07283 * 179.72167 * 14 13 12
16 16 O 1.21620 * 119.99916 * 180.02562 * 15 14 13
17 17 N 1.34771 * 119.99799 * 0.02562 * 15 14 13
18 18 C 1.36901 * 119.99838 * 180.02562 * 17 15 14
19 19 H 1.07995 * 119.99828 * 0.02562 * 18 17 15
20 20 C 1.39027 * 119.99898 * 180.02562 * 18 17 15
21 21 N 1.31382 * 119.99785 * 180.02562 * 20 18 17
22 22 Si 1.86796 * 120.00079 * 0.02562 * 20 18 17
23 23 H 1.48494 * 109.47075 * 90.00020 * 22 20 18
24 24 H 1.48507 * 109.46927 * 210.00180 * 22 20 18
25 25 H 1.48500 * 109.47342 * 329.99929 * 22 20 18
26 26 C 1.39825 * 119.85259 * 359.73755 * 14 13 12
27 27 C 1.37633 * 119.91924 * 0.02562 * 26 14 13
28 28 N 1.36593 * 125.78025 * 275.00413 * 6 5 3
29 29 H 0.97007 * 125.91345 * 0.02562 * 28 6 5
30 30 H 1.08997 * 109.46765 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.46967 * 299.99772 * 1 2 3
32 32 H 1.09002 * 109.46640 * 59.99976 * 1 2 3
33 33 H 1.09001 * 109.47201 * 300.00712 * 5 3 2
34 34 H 1.09001 * 109.46880 * 60.00295 * 5 3 2
35 35 H 1.08000 * 125.95876 * 0.02562 * 7 6 5
36 36 H 1.08003 * 119.95911 * 0.02562 * 12 11 10
37 37 H 1.07994 * 120.03794 * 180.27792 * 13 12 11
38 38 H 0.96996 * 120.00238 * 0.02562 * 17 15 14
39 39 H 0.96997 * 119.99790 * 179.97438 * 21 20 18
40 40 H 1.08000 * 120.04131 * 179.97438 * 26 14 13
41 41 H 1.07997 * 119.96387 * 180.02562 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5663 1.2749 0.0063
6 6 3.9937 2.7201 0.0044
7 6 4.2983 3.4536 1.0942
8 6 4.6519 4.7535 0.6638
9 8 4.9874 5.6810 1.3779
10 7 4.5445 4.7818 -0.6804
11 6 4.7975 5.8779 -1.5025
12 6 4.6496 5.7603 -2.8814
13 6 4.8939 6.8424 -3.6961
14 6 5.3016 8.0578 -3.1377
15 6 5.5703 9.2177 -4.0079
16 8 5.9253 10.2740 -3.5208
17 7 5.4224 9.1071 -5.3429
18 6 5.6723 10.1837 -6.1508
19 1 5.9883 11.1214 -5.7183
20 6 5.5192 10.0697 -7.5279
21 7 5.7595 11.1028 -8.3032
22 14 4.9719 8.4479 -8.2758
23 1 3.4896 8.4161 -8.3583
24 1 5.5466 8.3122 -9.6384
25 1 5.4445 7.3260 -7.4253
26 6 5.4543 8.1708 -1.7524
27 6 5.2036 7.0860 -0.9433
28 7 4.1322 3.5104 -1.1011
29 1 3.9724 3.2387 -2.0185
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 3.9522 0.7827 0.8990
34 1 3.9599 0.7789 -0.8809
35 1 4.2787 3.1078 2.1172
36 1 4.3386 4.8201 -3.3123
37 1 4.7746 6.7517 -4.7656
38 1 5.1389 8.2647 -5.7313
39 1 5.6531 11.0232 -9.2640
40 1 5.7695 9.1080 -1.3179
41 1 5.3209 7.1726 0.1267
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000355711853.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:19:26
Heat of formation + Delta-G solvation = -59.782791 kcal
Electronic energy + Delta-G solvation = -28524.684280 eV
Core-core repulsion = 24178.890413 eV
Total energy + Delta-G solvation = -4345.793867 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-43.24486 -41.46815 -40.97956 -39.29301 -38.57261 -37.55179 -36.22538 -35.30956
-33.95472 -32.41193 -32.23728 -31.20133 -30.01012 -28.22402 -27.05948 -24.87910
-24.11864 -22.85438 -22.09214 -21.53655 -21.32450 -20.72633 -20.01574 -18.75771
-18.31607 -17.82774 -17.63493 -17.37906 -17.12529 -17.09413 -16.35591 -16.16101
-15.72430 -15.53939 -15.34154 -15.05432 -14.82575 -14.71384 -14.56155 -14.47300
-14.43334 -14.18186 -14.13937 -13.65840 -13.52730 -13.12114 -13.04714 -12.90131
-12.54706 -12.37035 -12.01633 -11.82811 -11.78069 -11.63617 -11.46269 -10.99340
-10.66585 -10.37907 -10.24353 -9.59837 -8.98825 -8.51362 -6.09677 -0.50245
0.17938 0.25293 0.44566 1.14753 1.24259 1.32995 1.40934 1.65618
1.89494 2.16731 2.17616 2.50456 2.69991 2.72819 3.17644 3.18421
3.53324 3.70257 3.81970 3.91578 4.02166 4.05452 4.11479 4.20068
4.33842 4.35094 4.37988 4.56598 4.68841 4.77427 4.79844 4.87690
4.99558 5.09184 5.16027 5.26370 5.38797 5.47885 5.64200 5.85010
5.91619 6.37880 6.46184 6.67602 6.73628 6.94317 7.23186 7.79355
8.65312
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.014473 B = 0.002330 C = 0.002063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1934.227511 B =12012.383010 C =13567.036781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.353 6.353
3 C 0.463 3.537
4 O -0.539 6.539
5 C -0.047 4.047
6 C 0.228 3.772
7 C -0.342 4.342
8 C 0.508 3.492
9 O -0.578 6.578
10 N -0.357 5.357
11 C 0.171 3.829
12 C -0.140 4.140
13 C -0.063 4.063
14 C -0.139 4.139
15 C 0.479 3.521
16 O -0.628 6.628
17 N -0.566 5.566
18 C -0.334 4.334
19 H 0.059 0.941
20 C -0.011 4.011
21 N -0.920 5.920
22 Si 0.960 3.040
23 H -0.251 1.251
24 H -0.267 1.267
25 H -0.227 1.227
26 C -0.046 4.046
27 C -0.151 4.151
28 N -0.469 5.469
29 H 0.460 0.540
30 H 0.132 0.868
31 H 0.058 0.942
32 H 0.059 0.941
33 H 0.185 0.815
34 H 0.176 0.824
35 H 0.185 0.815
36 H 0.173 0.827
37 H 0.153 0.847
38 H 0.390 0.610
39 H 0.284 0.716
40 H 0.127 0.873
41 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.515 -37.560 12.919 40.844
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.269 6.269
3 C 0.307 3.693
4 O -0.428 6.428
5 C -0.085 4.085
6 C 0.110 3.890
7 C -0.373 4.373
8 C 0.310 3.690
9 O -0.460 6.460
10 N -0.167 5.167
11 C 0.077 3.923
12 C -0.160 4.160
13 C -0.083 4.083
14 C -0.144 4.144
15 C 0.269 3.731
16 O -0.516 6.516
17 N -0.205 5.205
18 C -0.463 4.463
19 H 0.077 0.923
20 C -0.211 4.211
21 N -0.559 5.559
22 Si 0.778 3.222
23 H -0.175 1.175
24 H -0.191 1.191
25 H -0.150 1.150
26 C -0.066 4.066
27 C -0.172 4.172
28 N -0.194 5.194
29 H 0.311 0.689
30 H 0.150 0.850
31 H 0.077 0.923
32 H 0.078 0.922
33 H 0.202 0.798
34 H 0.193 0.807
35 H 0.202 0.798
36 H 0.191 0.809
37 H 0.170 0.830
38 H 0.228 0.772
39 H 0.094 0.906
40 H 0.145 0.855
41 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -9.293 -35.821 13.232 39.301
hybrid contribution -0.416 0.673 -1.035 1.302
sum -9.708 -35.147 12.198 38.450
Atomic orbital electron populations
1.23524 0.74853 1.05668 1.02344 1.86477 1.24661 1.32145 1.83631
1.23813 0.92380 0.81329 0.71828 1.90810 1.68164 1.37626 1.46190
1.20354 0.86924 0.88022 1.13171 1.20570 0.90971 0.92766 0.84722
1.21824 1.21254 0.92746 1.01434 1.17799 0.80521 0.91546 0.79121
1.90778 1.53878 1.44240 1.57073 1.45397 1.61859 1.02122 1.07285
1.17919 0.98940 0.84967 0.90519 1.20803 1.04824 1.00923 0.89478
1.21298 0.95485 0.90497 1.01009 1.20003 1.05899 0.94330 0.94131
1.18337 0.83619 0.88671 0.82437 1.90615 1.53927 1.31958 1.75129
1.41886 1.60355 1.12676 1.05598 1.19083 1.45520 0.92236 0.89417
0.92315 1.26229 0.96313 1.03181 0.95422 1.69774 1.47200 1.32879
1.05999 0.85452 0.80053 0.77389 0.79302 1.17521 1.19139 1.14995
1.21031 0.95275 0.98463 0.91811 1.21213 1.03063 0.90925 1.02003
1.43902 1.66889 0.98631 1.09935 0.68923 0.85033 0.92313 0.92210
0.79771 0.80662 0.79769 0.80918 0.82997 0.77234 0.90607 0.85529
0.83419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.13 10.56 113.37 1.20 1.33 16
2 O -0.35 -2.01 10.57 -51.46 -0.54 -2.55 16
3 C 0.46 3.36 7.95 71.24 0.57 3.93 16
4 O -0.54 -9.26 15.78 21.98 0.35 -8.92 16
5 C -0.05 0.05 6.35 29.10 0.18 0.24 16
6 C 0.23 2.12 5.70 41.04 0.23 2.36 16
7 C -0.34 -5.89 10.73 22.28 0.24 -5.65 16
8 C 0.51 14.11 7.81 85.01 0.66 14.77 16
9 O -0.58 -21.13 15.20 -4.60 -0.07 -21.20 16
10 N -0.36 -8.27 3.76 -311.52 -1.17 -9.44 16
11 C 0.17 4.62 6.68 38.40 0.26 4.88 16
12 C -0.14 -3.06 9.64 22.35 0.22 -2.84 16
13 C -0.06 -1.78 9.53 22.51 0.21 -1.56 16
14 C -0.14 -5.38 5.88 -20.08 -0.12 -5.50 16
15 C 0.48 24.10 7.71 86.68 0.67 24.77 16
16 O -0.63 -37.98 15.91 -4.09 -0.07 -38.05 16
17 N -0.57 -27.92 5.03 -309.95 -1.56 -29.48 16
18 C -0.33 -19.82 10.16 84.09 0.85 -18.97 16
19 H 0.06 4.15 7.38 -2.91 -0.02 4.13 16
20 C -0.01 -0.60 5.50 84.95 0.47 -0.14 16
21 N -0.92 -54.56 13.96 21.68 0.30 -54.25 16
22 Si 0.96 37.07 27.74 68.60 1.90 38.98 16
23 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16
24 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16
25 H -0.23 -7.16 6.52 99.48 0.65 -6.52 16
26 C -0.05 -1.72 9.58 22.51 0.22 -1.50 16
27 C -0.15 -5.05 9.36 22.35 0.21 -4.84 16
28 N -0.47 -5.54 6.94 -47.37 -0.33 -5.87 16
29 H 0.46 1.88 7.89 -213.30 -1.68 0.19 16
30 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16
31 H 0.06 0.36 8.13 -2.39 -0.02 0.34 16
32 H 0.06 0.34 8.13 -2.39 -0.02 0.33 16
33 H 0.19 -1.37 8.14 -2.39 -0.02 -1.39 16
34 H 0.18 -1.63 8.14 -2.39 -0.02 -1.65 16
35 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16
36 H 0.17 1.92 6.95 -2.91 -0.02 1.90 16
37 H 0.15 3.55 6.39 -2.91 -0.02 3.54 16
38 H 0.39 15.62 3.78 -92.71 -0.35 15.27 16
39 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16
40 H 0.13 5.09 7.64 -2.91 -0.02 5.07 16
41 H 0.15 5.33 5.44 -2.91 -0.02 5.32 16
Total: -1.00 -98.02 361.28 3.92 -94.10
By element:
Atomic # 1 Polarization: 26.37 SS G_CDS: -0.96 Total: 25.41 kcal
Atomic # 6 Polarization: 5.21 SS G_CDS: 6.07 Total: 11.27 kcal
Atomic # 7 Polarization: -96.28 SS G_CDS: -2.76 Total: -99.04 kcal
Atomic # 8 Polarization: -70.39 SS G_CDS: -0.33 Total: -70.72 kcal
Atomic # 14 Polarization: 37.07 SS G_CDS: 1.90 Total: 38.98 kcal
Total: -98.02 3.92 -94.10 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000355711853.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.319 kcal
(2) G-P(sol) polarization free energy of solvation -98.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.703 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.783 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds