Wall clock time and date at job start Wed Apr 1 2020 03:12:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35907 * 116.99659 * 2 1
4 4 C 1.38848 * 119.98883 * 0.02562 * 3 2 1
5 5 C 1.38239 * 120.23892 * 179.97438 * 4 3 2
6 6 C 1.38014 * 120.20273 * 359.72038 * 5 4 3
7 7 C 1.39560 * 119.96439 * 0.53124 * 6 5 4
8 8 C 1.47859 * 120.11545 * 179.74378 * 7 6 5
9 9 N 1.31922 * 126.57176 * 0.04456 * 8 7 6
10 10 C 1.34943 * 105.51077 * 180.11819 * 9 8 7
11 11 C 1.48483 * 126.30930 * 179.84568 * 10 9 8
12 12 O 1.21475 * 119.99861 * 359.72189 * 11 10 9
13 13 N 1.34779 * 119.99898 * 179.71710 * 11 10 9
14 14 C 1.47066 * 136.05571 * 180.02562 * 13 11 10
15 15 C 1.53504 * 88.04678 * 207.12426 * 14 13 11
16 16 O 1.42902 * 114.20451 * 87.54970 * 15 14 13
17 17 C 1.50703 * 114.20523 * 220.37340 * 15 14 13
18 18 H 1.08004 * 119.99655 * 0.02562 * 17 15 14
19 19 C 1.37874 * 119.99845 * 180.02562 * 17 15 14
20 20 N 1.31519 * 119.99837 * 359.97438 * 19 17 15
21 21 Si 1.86801 * 119.99979 * 180.02562 * 19 17 15
22 22 H 1.48498 * 109.46773 * 359.97438 * 21 19 17
23 23 H 1.48495 * 109.47248 * 119.99540 * 21 19 17
24 24 H 1.48504 * 109.46795 * 239.99520 * 21 19 17
25 25 C 1.47064 * 136.05768 * 0.04931 * 13 11 10
26 26 N 1.30740 * 107.38324 * 359.58750 * 10 9 8
27 27 O 1.21272 * 110.34006 * 0.26252 * 26 10 9
28 28 C 1.38455 * 119.97988 * 179.97438 * 3 2 1
29 29 H 1.08999 * 109.47667 * 60.00388 * 1 2 3
30 30 H 1.09005 * 109.47311 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47202 * 299.99816 * 1 2 3
32 32 H 1.08006 * 119.88367 * 0.02562 * 4 3 2
33 33 H 1.08001 * 119.89578 * 180.02562 * 5 4 3
34 34 H 1.07997 * 120.01962 * 180.30238 * 6 5 4
35 35 H 1.09002 * 113.46793 * 321.93398 * 14 13 11
36 36 H 1.08999 * 113.46805 * 92.31765 * 14 13 11
37 37 H 0.96697 * 113.99512 * 180.02562 * 16 15 14
38 38 H 0.97004 * 119.99468 * 180.02562 * 20 19 17
39 39 H 1.08999 * 113.47096 * 267.62545 * 25 13 11
40 40 H 1.09005 * 113.46966 * 38.00938 * 25 13 11
41 41 H 1.08000 * 120.10592 * 359.97438 * 28 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2110 0.0000
4 6 1.2894 2.3753 0.0005
5 6 1.9116 3.6098 0.0011
6 6 3.2892 3.6930 0.0069
7 6 4.0579 2.5282 0.0011
8 6 5.5340 2.6134 0.0016
9 7 6.2576 3.7165 0.0080
10 6 7.5428 3.3050 0.0029
11 6 8.7450 4.1765 0.0037
12 8 8.6193 5.3847 0.0042
13 7 9.9756 3.6269 0.0039
14 6 11.3587 4.1270 0.0050
15 6 11.7741 2.8257 -0.6953
16 8 11.6785 2.8709 -2.1204
17 6 13.0740 2.2456 -0.2004
18 1 13.6246 2.7450 0.5831
19 6 13.5602 1.0773 -0.7479
20 7 12.8894 0.4690 -1.7016
21 14 15.1711 0.3578 -0.1340
22 1 15.7251 1.2260 0.9358
23 1 14.9305 -1.0037 0.4078
24 1 16.1384 0.2795 -1.2581
25 6 10.5264 2.2633 0.0027
26 7 7.5343 1.9976 0.0028
27 8 6.3945 1.5835 0.0020
28 6 3.4286 1.2830 0.0005
29 1 -0.3634 0.5137 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 0.2110 2.3163 0.0014
33 1 1.3177 4.5118 0.0019
34 1 3.7721 4.6589 0.0122
35 1 11.4995 5.0154 -0.6107
36 1 11.7801 4.2358 1.0043
37 1 11.9406 2.0496 -2.5583
38 1 13.2313 -0.3531 -2.0865
39 1 10.7267 1.8751 1.0013
40 1 9.9589 1.5664 -0.6143
41 1 4.0182 0.3782 0.0014
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000356871225.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:12:41
Heat of formation + Delta-G solvation = 30.824408 kcal
Electronic energy + Delta-G solvation = -28812.420301 eV
Core-core repulsion = 24470.555457 eV
Total energy + Delta-G solvation = -4341.864844 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-45.62010 -40.54316 -39.68874 -38.00317 -37.60641 -35.60035 -34.14406 -33.39205
-32.22761 -31.29031 -30.31275 -28.98321 -27.76952 -26.10741 -25.19979 -24.65201
-24.46452 -22.87845 -22.07733 -20.49234 -19.29430 -18.35149 -18.25362 -17.59441
-17.21867 -16.66339 -16.50335 -16.34207 -16.18343 -15.59481 -15.18115 -15.09825
-14.79402 -14.32462 -14.19495 -13.94094 -13.37062 -13.30919 -12.93521 -12.75701
-12.68785 -12.42051 -12.20577 -12.12409 -11.97205 -11.59966 -11.51782 -11.41209
-11.22260 -11.11268 -10.98937 -10.57458 -10.50127 -10.30556 -10.06561 -9.38629
-9.18597 -8.83100 -8.66479 -8.49429 -8.02233 -6.43394 -4.54048 0.13124
0.97490 1.20665 1.92079 2.42966 2.67660 2.89431 3.12669 3.22248
3.25887 3.30483 3.45945 3.83705 4.03330 4.16724 4.30974 4.46797
4.62404 4.69654 4.74791 4.80114 4.84575 4.95028 5.02343 5.04963
5.33945 5.44554 5.48997 5.68014 5.76147 5.87122 5.95020 6.01488
6.05571 6.15823 6.32230 6.44595 6.49002 6.69817 6.88948 7.03707
7.59753 7.74606 7.93378 8.16555 8.46552 8.50524 9.17239 9.44323
10.63794
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.019185 B = 0.002216 C = 0.002035
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1459.091976 B =12632.813267 C =13757.741583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.313 6.313
3 C 0.125 3.875
4 C -0.183 4.183
5 C -0.081 4.081
6 C -0.099 4.099
7 C 0.017 3.983
8 C 0.211 3.789
9 N -0.426 5.426
10 C 0.152 3.848
11 C 0.624 3.376
12 O -0.525 6.525
13 N -0.617 5.617
14 C 0.114 3.886
15 C 0.241 3.759
16 O -0.571 6.571
17 C -0.533 4.533
18 H 0.075 0.925
19 C 0.072 3.928
20 N -0.896 5.896
21 Si 0.911 3.089
22 H -0.269 1.269
23 H -0.280 1.280
24 H -0.280 1.280
25 C 0.073 3.927
26 N -0.331 5.331
27 O 0.105 5.895
28 C -0.113 4.113
29 H 0.057 0.943
30 H 0.102 0.898
31 H 0.057 0.943
32 H 0.135 0.865
33 H 0.138 0.862
34 H 0.144 0.856
35 H 0.073 0.927
36 H 0.093 0.907
37 H 0.395 0.605
38 H 0.274 0.726
39 H 0.085 0.915
40 H 0.073 0.927
41 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.044 -1.716 3.783 24.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.227 6.227
3 C 0.080 3.920
4 C -0.203 4.203
5 C -0.099 4.099
6 C -0.119 4.119
7 C 0.014 3.986
8 C -0.007 4.007
9 N -0.159 5.159
10 C -0.122 4.122
11 C 0.408 3.592
12 O -0.401 6.401
13 N -0.350 5.350
14 C -0.007 4.007
15 C 0.199 3.801
16 O -0.384 6.384
17 C -0.571 4.571
18 H 0.093 0.907
19 C -0.131 4.131
20 N -0.536 5.536
21 Si 0.738 3.262
22 H -0.193 1.193
23 H -0.206 1.206
24 H -0.206 1.206
25 C -0.050 4.050
26 N -0.033 5.033
27 O 0.035 5.965
28 C -0.133 4.133
29 H 0.076 0.924
30 H 0.120 0.880
31 H 0.075 0.925
32 H 0.152 0.848
33 H 0.155 0.845
34 H 0.162 0.838
35 H 0.092 0.908
36 H 0.111 0.889
37 H 0.252 0.748
38 H 0.085 0.915
39 H 0.103 0.897
40 H 0.092 0.908
41 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -23.482 -0.694 3.778 23.794
hybrid contribution 0.388 -1.126 0.194 1.207
sum -23.094 -1.820 3.972 23.503
Atomic orbital electron populations
1.23111 0.77993 1.04316 1.01462 1.86110 1.21626 1.26280 1.88648
1.18682 0.91646 0.84614 0.97063 1.21494 1.00544 0.92266 1.05965
1.20904 0.93834 0.97481 0.97719 1.21220 0.93487 0.97990 0.99206
1.16834 0.83055 0.94217 1.04467 1.26304 0.94756 0.81253 0.98381
1.72193 1.00328 1.25847 1.17504 1.25663 0.94122 0.88399 1.04011
1.15685 0.79364 0.85259 0.78888 1.90770 1.84820 1.12701 1.51769
1.49546 1.03707 1.13480 1.68265 1.23477 0.76048 1.00464 1.00723
1.19573 0.91046 0.89082 0.80435 1.86042 1.90238 1.43959 1.18166
1.21415 1.05992 1.08376 1.21349 0.90657 1.25102 0.97826 0.95978
0.94209 1.69276 1.38988 1.19166 1.26187 0.86225 0.82204 0.78870
0.78920 1.19350 1.20614 1.20575 1.24443 0.95670 0.83165 1.01725
1.75094 0.98207 1.13482 1.16561 1.85427 1.10919 1.35618 1.64559
1.20435 0.92110 0.97548 1.03228 0.92438 0.87965 0.92453 0.84750
0.84452 0.83821 0.90847 0.88886 0.74789 0.91520 0.89678 0.90839
0.83585
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.11 9.81 101.05 0.99 1.10 16
2 O -0.31 -2.55 10.49 -19.45 -0.20 -2.76 16
3 C 0.13 1.08 6.68 -39.28 -0.26 0.82 16
4 C -0.18 -1.25 9.03 -39.36 -0.36 -1.60 16
5 C -0.08 -0.58 10.03 -39.66 -0.40 -0.98 16
6 C -0.10 -0.97 9.70 -39.17 -0.38 -1.34 16
7 C 0.02 0.19 5.87 -104.99 -0.62 -0.43 16
8 C 0.21 3.13 8.00 -13.81 -0.11 3.02 16
9 N -0.43 -7.70 11.26 -10.28 -0.12 -7.81 16
10 C 0.15 3.09 7.97 -156.36 -1.25 1.84 16
11 C 0.62 14.16 8.10 -12.04 -0.10 14.07 16
12 O -0.53 -12.90 17.87 5.39 0.10 -12.80 16
13 N -0.62 -13.88 3.69 -185.87 -0.69 -14.56 16
14 C 0.11 2.50 8.03 -8.50 -0.07 2.43 16
15 C 0.24 5.85 1.59 -91.18 -0.14 5.71 16
16 O -0.57 -14.97 13.54 -35.23 -0.48 -15.45 16
17 C -0.53 -13.28 8.69 -34.44 -0.30 -13.58 16
18 H 0.08 1.80 7.81 -52.48 -0.41 1.39 16
19 C 0.07 1.78 5.40 -17.82 -0.10 1.69 16
20 N -0.90 -22.84 11.01 55.43 0.61 -22.23 16
21 Si 0.91 19.36 29.54 -169.99 -5.02 14.34 16
22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16
24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16
25 C 0.07 1.64 7.22 -8.43 -0.06 1.58 16
26 N -0.33 -6.28 10.72 31.16 0.33 -5.95 16
27 O 0.10 1.66 11.11 16.62 0.18 1.84 16
28 C -0.11 -1.12 9.67 -39.03 -0.38 -1.49 16
29 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16
30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16
32 H 0.13 0.55 6.28 -52.48 -0.33 0.22 16
33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16
34 H 0.14 1.44 7.87 -52.49 -0.41 1.03 16
35 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16
36 H 0.09 1.82 8.10 -51.93 -0.42 1.40 16
37 H 0.40 10.47 6.33 45.56 0.29 10.76 16
38 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16
39 H 0.09 1.83 8.10 -51.93 -0.42 1.41 16
40 H 0.07 1.73 7.50 -51.93 -0.39 1.34 16
41 H 0.15 1.34 7.94 -52.49 -0.42 0.93 16
LS Contribution 364.24 15.07 5.49 5.49
Total: -1.00 -30.90 364.24 -7.02 -37.92
By element:
Atomic # 1 Polarization: 12.86 SS G_CDS: -3.71 Total: 9.15 kcal
Atomic # 6 Polarization: 16.34 SS G_CDS: -3.52 Total: 12.82 kcal
Atomic # 7 Polarization: -50.70 SS G_CDS: 0.14 Total: -50.55 kcal
Atomic # 8 Polarization: -28.76 SS G_CDS: -0.40 Total: -29.16 kcal
Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -30.90 -7.02 -37.92 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356871225.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.743 kcal
(2) G-P(sol) polarization free energy of solvation -30.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.845 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds