Wall clock time and date at job start Wed Apr 1 2020 03:12:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35907 * 116.99659 * 2 1
4 4 C 1.38848 * 119.98883 * 0.02562 * 3 2 1
5 5 C 1.38239 * 120.23892 * 179.97438 * 4 3 2
6 6 C 1.38014 * 120.20273 * 359.72038 * 5 4 3
7 7 C 1.39560 * 119.96439 * 0.53124 * 6 5 4
8 8 C 1.47859 * 120.11545 * 179.74378 * 7 6 5
9 9 N 1.31922 * 126.57176 * 0.04456 * 8 7 6
10 10 C 1.34943 * 105.51077 * 180.11819 * 9 8 7
11 11 C 1.48483 * 126.30930 * 179.84568 * 10 9 8
12 12 O 1.21475 * 119.99861 * 359.72189 * 11 10 9
13 13 N 1.34779 * 119.99898 * 179.71710 * 11 10 9
14 14 C 1.47066 * 136.05571 * 180.02562 * 13 11 10
15 15 C 1.53504 * 88.04678 * 207.12426 * 14 13 11
16 16 O 1.42902 * 114.20451 * 87.54970 * 15 14 13
17 17 C 1.50703 * 114.20523 * 220.37340 * 15 14 13
18 18 H 1.08004 * 119.99655 * 0.02562 * 17 15 14
19 19 C 1.37874 * 119.99845 * 180.02562 * 17 15 14
20 20 N 1.31519 * 119.99837 * 359.97438 * 19 17 15
21 21 Si 1.86801 * 119.99979 * 180.02562 * 19 17 15
22 22 H 1.48498 * 109.46773 * 359.97438 * 21 19 17
23 23 H 1.48495 * 109.47248 * 119.99540 * 21 19 17
24 24 H 1.48504 * 109.46795 * 239.99520 * 21 19 17
25 25 C 1.47064 * 136.05768 * 0.04931 * 13 11 10
26 26 N 1.30740 * 107.38324 * 359.58750 * 10 9 8
27 27 O 1.21272 * 110.34006 * 0.26252 * 26 10 9
28 28 C 1.38455 * 119.97988 * 179.97438 * 3 2 1
29 29 H 1.08999 * 109.47667 * 60.00388 * 1 2 3
30 30 H 1.09005 * 109.47311 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47202 * 299.99816 * 1 2 3
32 32 H 1.08006 * 119.88367 * 0.02562 * 4 3 2
33 33 H 1.08001 * 119.89578 * 180.02562 * 5 4 3
34 34 H 1.07997 * 120.01962 * 180.30238 * 6 5 4
35 35 H 1.09002 * 113.46793 * 321.93398 * 14 13 11
36 36 H 1.08999 * 113.46805 * 92.31765 * 14 13 11
37 37 H 0.96697 * 113.99512 * 180.02562 * 16 15 14
38 38 H 0.97004 * 119.99468 * 180.02562 * 20 19 17
39 39 H 1.08999 * 113.47096 * 267.62545 * 25 13 11
40 40 H 1.09005 * 113.46966 * 38.00938 * 25 13 11
41 41 H 1.08000 * 120.10592 * 359.97438 * 28 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2110 0.0000
4 6 1.2894 2.3753 0.0005
5 6 1.9116 3.6098 0.0011
6 6 3.2892 3.6930 0.0069
7 6 4.0579 2.5282 0.0011
8 6 5.5340 2.6134 0.0016
9 7 6.2576 3.7165 0.0080
10 6 7.5428 3.3050 0.0029
11 6 8.7450 4.1765 0.0037
12 8 8.6193 5.3847 0.0042
13 7 9.9756 3.6269 0.0039
14 6 11.3587 4.1270 0.0050
15 6 11.7741 2.8257 -0.6953
16 8 11.6785 2.8709 -2.1204
17 6 13.0740 2.2456 -0.2004
18 1 13.6246 2.7450 0.5831
19 6 13.5602 1.0773 -0.7479
20 7 12.8894 0.4690 -1.7016
21 14 15.1711 0.3578 -0.1340
22 1 15.7251 1.2260 0.9358
23 1 14.9305 -1.0037 0.4078
24 1 16.1384 0.2795 -1.2581
25 6 10.5264 2.2633 0.0027
26 7 7.5343 1.9976 0.0028
27 8 6.3945 1.5835 0.0020
28 6 3.4286 1.2830 0.0005
29 1 -0.3634 0.5137 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 0.2110 2.3163 0.0014
33 1 1.3177 4.5118 0.0019
34 1 3.7721 4.6589 0.0122
35 1 11.4995 5.0154 -0.6107
36 1 11.7801 4.2358 1.0043
37 1 11.9406 2.0496 -2.5583
38 1 13.2313 -0.3531 -2.0865
39 1 10.7267 1.8751 1.0013
40 1 9.9589 1.5664 -0.6143
41 1 4.0182 0.3782 0.0014
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000356871225.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:12:40
Heat of formation + Delta-G solvation = 7.466832 kcal
Electronic energy + Delta-G solvation = -28813.433162 eV
Core-core repulsion = 24470.555457 eV
Total energy + Delta-G solvation = -4342.877704 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-47.01458 -41.50512 -41.15214 -39.42619 -38.65939 -36.98498 -36.07014 -34.56384
-34.17662 -32.09940 -31.20027 -30.67441 -28.21483 -27.84854 -27.01999 -26.07519
-25.67298 -23.81715 -22.99170 -22.07380 -20.64357 -19.74314 -19.63497 -19.23352
-18.58452 -18.18738 -17.36663 -17.23229 -17.00064 -16.94325 -16.65105 -16.59693
-16.19137 -16.00041 -15.17407 -14.93925 -14.66712 -14.58954 -14.43936 -14.07819
-13.96130 -13.90839 -13.47295 -13.16175 -13.12726 -12.92648 -12.84172 -12.81278
-12.50199 -12.28738 -12.26245 -12.21320 -11.94675 -11.87143 -11.64673 -11.23397
-10.74136 -10.39339 -10.01433 -9.86728 -9.32326 -8.31568 -6.49152 -0.85354
-0.18890 0.32169 0.81190 1.14327 1.31255 1.45690 1.50195 1.61107
1.73714 2.16148 2.37083 2.43351 2.62883 2.65783 2.90633 3.38521
3.61422 3.74862 3.84081 3.98624 4.05500 4.08997 4.22279 4.26148
4.34256 4.45871 4.48448 4.49672 4.53018 4.63427 4.73716 4.77339
4.83653 4.85929 5.11804 5.12707 5.26877 5.32712 5.53791 5.69017
5.82519 6.36247 6.36634 6.50192 6.58683 6.78018 7.24347 7.40559
8.75780
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.019185 B = 0.002216 C = 0.002035
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1459.091976 B =12632.813267 C =13757.741583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 O -0.333 6.333
3 C 0.120 3.880
4 C -0.164 4.164
5 C -0.073 4.073
6 C -0.105 4.105
7 C -0.010 4.010
8 C 0.236 3.764
9 N -0.451 5.451
10 C 0.130 3.870
11 C 0.622 3.378
12 O -0.552 6.552
13 N -0.619 5.619
14 C 0.117 3.883
15 C 0.221 3.779
16 O -0.585 6.585
17 C -0.549 4.549
18 H 0.083 0.917
19 C 0.029 3.971
20 N -0.919 5.919
21 Si 0.976 3.024
22 H -0.262 1.262
23 H -0.278 1.278
24 H -0.281 1.281
25 C 0.087 3.913
26 N -0.344 5.344
27 O 0.117 5.883
28 C -0.120 4.120
29 H 0.071 0.929
30 H 0.116 0.884
31 H 0.072 0.928
32 H 0.170 0.830
33 H 0.171 0.829
34 H 0.136 0.864
35 H 0.069 0.931
36 H 0.120 0.880
37 H 0.390 0.610
38 H 0.277 0.723
39 H 0.097 0.903
40 H 0.059 0.941
41 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.395 -2.275 4.646 26.897
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.246 6.246
3 C 0.075 3.925
4 C -0.183 4.183
5 C -0.090 4.090
6 C -0.126 4.126
7 C -0.012 4.012
8 C 0.019 3.981
9 N -0.183 5.183
10 C -0.143 4.143
11 C 0.407 3.593
12 O -0.429 6.429
13 N -0.352 5.352
14 C -0.004 4.004
15 C 0.180 3.820
16 O -0.399 6.399
17 C -0.586 4.586
18 H 0.101 0.899
19 C -0.171 4.171
20 N -0.560 5.560
21 Si 0.801 3.199
22 H -0.186 1.186
23 H -0.204 1.204
24 H -0.207 1.207
25 C -0.036 4.036
26 N -0.046 5.046
27 O 0.045 5.955
28 C -0.140 4.140
29 H 0.090 0.910
30 H 0.134 0.866
31 H 0.091 0.909
32 H 0.187 0.813
33 H 0.189 0.811
34 H 0.154 0.846
35 H 0.087 0.913
36 H 0.137 0.863
37 H 0.247 0.753
38 H 0.087 0.913
39 H 0.115 0.885
40 H 0.077 0.923
41 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -25.839 -1.239 4.648 26.283
hybrid contribution 0.837 -1.022 -0.103 1.325
sum -25.002 -2.260 4.545 25.512
Atomic orbital electron populations
1.23444 0.75795 1.05866 1.02846 1.86097 1.23933 1.26118 1.88491
1.18775 0.91260 0.85663 0.96830 1.21909 1.02232 0.91203 1.02998
1.21261 0.92664 0.99055 0.96052 1.21330 0.94782 0.97028 0.99412
1.16926 0.80885 0.95640 1.07753 1.26948 0.95829 0.79938 0.95377
1.72159 0.99640 1.27023 1.19492 1.25272 0.94180 0.88678 1.06171
1.15936 0.79917 0.85307 0.78162 1.90733 1.85378 1.13798 1.52993
1.49575 1.04027 1.13384 1.68227 1.23549 0.75896 0.99206 1.01751
1.19851 0.91763 0.90800 0.79600 1.86028 1.90382 1.43834 1.19626
1.21651 1.06402 1.08799 1.21786 0.89911 1.25861 1.00733 0.96257
0.94296 1.69347 1.40258 1.19473 1.26903 0.85223 0.78316 0.78065
0.78336 1.18635 1.20385 1.20690 1.24262 0.94615 0.82920 1.01792
1.75059 0.99658 1.13000 1.16883 1.85389 1.10358 1.35555 1.64226
1.20463 0.93218 0.96882 1.03465 0.91017 0.86622 0.90935 0.81252
0.81134 0.84631 0.91267 0.86267 0.75335 0.91283 0.88520 0.92258
0.83727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.07 9.81 113.37 1.11 1.18 16
2 O -0.33 -4.64 10.49 -92.51 -0.97 -5.61 16
3 C 0.12 1.80 6.68 22.47 0.15 1.95 16
4 C -0.16 -1.61 9.03 22.42 0.20 -1.41 16
5 C -0.07 -0.80 10.03 22.22 0.22 -0.57 16
6 C -0.11 -1.92 9.70 22.54 0.22 -1.70 16
7 C -0.01 -0.21 5.87 -20.10 -0.12 -0.33 16
8 C 0.24 7.12 8.00 87.31 0.70 7.82 16
9 N -0.45 -16.78 11.26 -302.60 -3.41 -20.18 16
10 C 0.13 5.46 7.97 137.41 1.10 6.56 16
11 C 0.62 29.06 8.10 86.98 0.70 29.77 16
12 O -0.55 -27.88 17.87 -3.64 -0.07 -27.95 16
13 N -0.62 -28.42 3.69 -860.71 -3.18 -31.60 16
14 C 0.12 5.16 8.03 83.18 0.67 5.83 16
15 C 0.22 10.90 1.59 -11.16 -0.02 10.88 16
16 O -0.59 -31.55 13.54 -148.98 -2.02 -33.57 16
17 C -0.55 -27.22 8.69 25.60 0.22 -27.00 16
18 H 0.08 3.89 7.81 -2.91 -0.02 3.87 16
19 C 0.03 1.43 5.40 84.65 0.46 1.88 16
20 N -0.92 -47.23 11.01 21.45 0.24 -46.99 16
21 Si 0.98 39.28 29.54 68.60 2.03 41.31 16
22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16
23 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16
24 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16
25 C 0.09 3.99 7.22 83.23 0.60 4.59 16
26 N -0.34 -13.45 10.72 -57.99 -0.62 -14.07 16
27 O 0.12 3.81 11.11 69.53 0.77 4.58 16
28 C -0.12 -2.27 9.67 22.63 0.22 -2.05 16
29 H 0.07 0.15 7.66 -2.39 -0.02 0.13 16
30 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16
31 H 0.07 0.14 7.66 -2.39 -0.02 0.12 16
32 H 0.17 0.48 6.28 -2.91 -0.02 0.46 16
33 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16
34 H 0.14 2.67 7.87 -2.91 -0.02 2.65 16
35 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16
36 H 0.12 4.58 8.10 -2.39 -0.02 4.56 16
37 H 0.39 21.35 6.33 -74.06 -0.47 20.88 16
38 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16
39 H 0.10 4.18 8.10 -2.39 -0.02 4.16 16
40 H 0.06 2.88 7.50 -2.38 -0.02 2.86 16
41 H 0.14 2.66 7.94 -2.91 -0.02 2.63 16
Total: -1.00 -67.96 364.24 -0.15 -68.11
By element:
Atomic # 1 Polarization: 27.94 SS G_CDS: 0.64 Total: 28.58 kcal
Atomic # 6 Polarization: 30.96 SS G_CDS: 6.44 Total: 37.39 kcal
Atomic # 7 Polarization: -105.87 SS G_CDS: -6.97 Total: -112.84 kcal
Atomic # 8 Polarization: -60.27 SS G_CDS: -2.28 Total: -62.55 kcal
Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal
Total: -67.96 -0.15 -68.11 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356871225.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.580 kcal
(2) G-P(sol) polarization free energy of solvation -67.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.467 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds