Wall clock time and date at job start Wed Apr 1 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34767 * 124.17497 * 2 1 4 4 O 1.21230 * 127.15984 * 0.06895 * 3 2 1 5 5 C 1.51583 * 105.68277 * 180.02562 * 3 2 1 6 6 N 1.47306 * 103.59497 * 0.02562 * 5 3 2 7 7 N 1.40104 * 126.69026 * 179.97438 * 6 5 3 8 8 C 1.34774 * 119.99780 * 104.99698 * 7 6 5 9 9 O 1.21723 * 120.00444 * 0.02562 * 8 7 6 10 10 C 1.46255 * 119.99903 * 179.97438 * 8 7 6 11 11 C 1.35021 * 120.00084 * 179.97438 * 10 8 7 12 12 C 1.46965 * 119.99672 * 180.02562 * 11 10 8 13 13 C 1.40021 * 120.10614 * 359.72768 * 12 11 10 14 14 C 1.37593 * 119.89994 * 179.69722 * 13 12 11 15 15 C 1.39175 * 120.10228 * 0.59943 * 14 13 12 16 16 O 1.35564 * 119.90471 * 179.69687 * 15 14 13 17 17 C 1.34777 * 117.00726 * 174.42351 * 16 15 14 18 18 H 1.08000 * 119.99657 * 5.06054 * 17 16 15 19 19 C 1.38723 * 120.00398 * 185.05598 * 17 16 15 20 20 N 1.31506 * 119.99798 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99801 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47264 * 60.00236 * 21 19 17 23 23 H 1.48504 * 109.46616 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47091 * 299.99791 * 21 19 17 25 25 C 1.39179 * 120.20099 * 359.68013 * 15 14 13 26 26 C 1.37602 * 120.10366 * 0.02562 * 25 15 14 27 27 C 1.33790 * 124.18136 * 180.30559 * 2 1 3 28 28 O 1.21539 * 123.76770 * 359.97438 * 27 2 1 29 29 H 1.09011 * 109.47154 * 90.00253 * 1 2 3 30 30 H 1.09000 * 109.47022 * 209.99375 * 1 2 3 31 31 H 1.08996 * 109.47285 * 329.99820 * 1 2 3 32 32 H 1.09000 * 110.59539 * 241.47234 * 5 3 2 33 33 H 1.09009 * 110.60106 * 118.52857 * 5 3 2 34 34 H 0.97001 * 119.99647 * 284.99977 * 7 6 5 35 35 H 1.08009 * 119.99806 * 359.72835 * 10 8 7 36 36 H 1.07994 * 120.00155 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.04663 * 0.02562 * 13 12 11 38 38 H 1.07999 * 119.95343 * 180.28136 * 14 13 12 39 39 H 0.96998 * 119.99690 * 179.97438 * 20 19 17 40 40 H 1.08000 * 119.95020 * 180.02562 * 25 15 14 41 41 H 1.07994 * 120.05258 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2220 1.1150 0.0000 4 8 1.8340 2.2635 0.0012 5 6 3.6596 0.6342 -0.0007 6 7 3.5338 -0.8335 -0.0016 7 7 4.5817 -1.7635 -0.0030 8 6 4.8860 -2.4374 1.1238 9 8 4.2501 -2.2386 2.1425 10 6 5.9795 -3.4086 1.1222 11 6 6.2847 -4.0835 2.2512 12 6 7.3839 -5.0590 2.2497 13 6 8.1124 -5.2944 1.0773 14 6 9.1448 -6.2040 1.0823 15 6 9.4573 -6.8988 2.2470 16 8 10.4712 -7.7987 2.2457 17 6 10.7993 -8.3527 3.4298 18 1 10.2101 -8.1366 4.3087 19 6 11.8936 -9.2005 3.5195 20 7 12.6112 -9.4633 2.4493 21 14 12.3477 -9.9689 5.1605 22 1 11.2143 -10.7929 5.6518 23 1 13.5472 -10.8276 4.9899 24 1 12.6431 -8.8965 6.1443 25 6 8.7321 -6.6724 3.4132 26 6 7.7020 -5.7602 3.4192 27 6 2.2166 -1.1068 -0.0059 28 8 1.7603 -2.2333 -0.0115 29 1 -0.3634 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 4.1781 0.9745 0.8957 33 1 4.1776 0.9749 -0.8972 34 1 5.0882 -1.9222 -0.8149 35 1 6.5404 -3.5889 0.2169 36 1 5.7211 -3.9064 3.1552 37 1 7.8678 -4.7588 0.1719 38 1 9.7102 -6.3829 0.1797 39 1 13.3766 -10.0558 2.5121 40 1 8.9784 -7.2136 4.3148 41 1 7.1402 -5.5849 4.3247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492319654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:23 Heat of formation + Delta-G solvation = -11.454116 kcal Electronic energy + Delta-G solvation = -27745.596354 eV Core-core repulsion = 23401.898176 eV Total energy + Delta-G solvation = -4343.698178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.72201 -39.81985 -39.24230 -38.84437 -37.02714 -36.59435 -35.85217 -33.41933 -32.91519 -32.32932 -30.50053 -28.85543 -27.73069 -27.60171 -25.75437 -24.08240 -22.89109 -22.28041 -21.53767 -20.55778 -19.75528 -18.69257 -18.26697 -17.74746 -17.28626 -17.11472 -17.08479 -16.41292 -15.94533 -15.17615 -14.89433 -14.75064 -14.64668 -14.53203 -14.37197 -14.33223 -14.20949 -13.89812 -13.57103 -13.20978 -13.11389 -13.03977 -12.67813 -12.03407 -11.86523 -11.81448 -11.54160 -11.18204 -11.15290 -10.87315 -10.77006 -10.60144 -10.38739 -10.27452 -10.02101 -9.71722 -9.57037 -9.45461 -8.93468 -8.45088 -7.20979 -6.71299 -4.25671 0.81885 0.89628 1.14079 2.07831 2.12733 2.40730 2.57747 3.00686 3.01516 3.04772 3.33727 3.50794 3.71332 3.77508 4.32137 4.43715 4.47575 4.70538 4.79278 4.86155 4.86591 4.96437 5.02431 5.14825 5.16265 5.30510 5.45458 5.46992 5.58128 5.93739 6.01834 6.23998 6.37703 6.40316 6.50579 6.57046 6.71040 6.83352 6.83976 7.02953 7.06082 7.16970 7.21844 7.56322 7.58265 7.73795 8.18813 8.73101 9.39096 10.44854 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.038735 B = 0.001543 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.679870 B =18145.044568 C =18296.089685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.574 5.574 3 C 0.532 3.468 4 O -0.466 6.466 5 C 0.068 3.932 6 N -0.429 5.429 7 N -0.486 5.486 8 C 0.562 3.438 9 O -0.534 6.534 10 C -0.283 4.283 11 C 0.057 3.943 12 C -0.205 4.205 13 C -0.039 4.039 14 C -0.200 4.200 15 C 0.168 3.832 16 O -0.159 6.159 17 C -0.394 4.394 18 H 0.098 0.902 19 C 0.043 3.957 20 N -0.849 5.849 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.243 4.243 26 C -0.031 4.031 27 C 0.707 3.293 28 O -0.522 6.522 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.423 0.577 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.276 0.724 40 H 0.132 0.868 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 17.520 -6.037 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.321 5.321 3 C 0.318 3.682 4 O -0.336 6.336 5 C -0.058 4.058 6 N -0.257 5.257 7 N -0.237 5.237 8 C 0.355 3.645 9 O -0.409 6.409 10 C -0.306 4.306 11 C 0.037 3.963 12 C -0.206 4.206 13 C -0.058 4.058 14 C -0.219 4.219 15 C 0.111 3.889 16 O -0.059 6.059 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.164 4.164 20 N -0.481 5.481 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.262 4.262 26 C -0.049 4.049 27 C 0.409 3.591 28 O -0.392 6.392 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.266 0.734 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.149 0.851 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.716 17.297 -5.560 24.023 hybrid contribution 0.492 -0.442 0.361 0.753 sum -15.225 16.855 -5.199 23.301 Atomic orbital electron populations 1.21898 0.74383 1.05074 1.03884 1.46229 1.09689 1.07531 1.68669 1.20670 0.88302 0.84782 0.74431 1.90843 1.78687 1.17762 1.46278 1.22780 0.96372 0.79309 1.07373 1.45635 0.99798 1.01713 1.78548 1.44686 1.27210 1.37089 1.14703 1.19008 0.83687 0.80007 0.81801 1.90827 1.52312 1.65690 1.32104 1.22024 1.02659 1.04533 1.01362 1.22306 0.90065 0.87292 0.96656 1.18395 1.02043 1.04907 0.95272 1.20879 0.93098 0.95313 0.96466 1.20153 1.02423 1.01805 0.97538 1.19629 0.88097 0.87739 0.93418 1.83895 1.42330 1.45781 1.33926 1.21458 1.13021 1.26846 0.85561 0.88483 1.25414 0.94814 0.96508 0.99688 1.70000 1.16527 1.32941 1.28670 0.85701 0.78647 0.79134 0.79602 1.19197 1.20029 1.19198 1.21102 1.00656 1.04960 0.99522 1.20997 0.94625 0.93039 0.96240 1.15771 0.80910 0.84510 0.77922 1.91021 1.74462 1.20203 1.53548 0.90635 0.88970 0.89093 0.85464 0.85322 0.73393 0.85109 0.85780 0.86269 0.86039 0.91440 0.85063 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.73 59.85 0.64 1.21 16 2 N -0.57 -5.17 3.00 -128.17 -0.39 -5.55 16 3 C 0.53 4.28 8.32 -10.56 -0.09 4.20 16 4 O -0.47 -4.71 17.76 5.60 0.10 -4.61 16 5 C 0.07 0.41 7.88 -4.32 -0.03 0.37 16 6 N -0.43 -4.20 3.41 -65.74 -0.22 -4.42 16 7 N -0.49 -4.70 6.34 30.16 0.19 -4.51 16 8 C 0.56 7.36 7.83 -13.04 -0.10 7.26 16 9 O -0.53 -9.14 16.51 5.17 0.09 -9.05 16 10 C -0.28 -3.42 9.41 -37.51 -0.35 -3.77 16 11 C 0.06 0.79 9.45 -37.19 -0.35 0.44 16 12 C -0.21 -3.25 5.87 -105.02 -0.62 -3.87 16 13 C -0.04 -0.62 9.40 -39.15 -0.37 -0.99 16 14 C -0.20 -3.79 9.97 -39.47 -0.39 -4.18 16 15 C 0.17 3.72 6.66 -38.88 -0.26 3.46 16 16 O -0.16 -4.19 9.74 0.77 0.01 -4.18 16 17 C -0.39 -10.18 9.48 30.91 0.29 -9.89 16 18 H 0.10 2.29 5.18 -52.49 -0.27 2.02 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.22 13.67 55.48 0.76 -22.46 16 21 Si 0.95 19.04 29.55 -169.99 -5.02 14.02 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 C -0.24 -4.82 9.14 -39.46 -0.36 -5.18 16 26 C -0.03 -0.52 9.79 -39.14 -0.38 -0.90 16 27 C 0.71 8.41 8.35 -88.02 -0.74 7.67 16 28 O -0.52 -8.24 17.43 5.33 0.09 -8.15 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.09 0.63 7.87 -51.93 -0.41 0.22 16 31 H 0.09 0.47 8.00 -51.93 -0.42 0.05 16 32 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.42 2.51 8.81 -182.59 -1.61 0.90 16 35 H 0.13 1.24 6.07 -52.48 -0.32 0.92 16 36 H 0.12 1.74 7.52 -52.49 -0.39 1.34 16 37 H 0.12 1.46 6.16 -52.49 -0.32 1.14 16 38 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 39 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.13 2.58 5.62 -52.49 -0.29 2.29 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -35.37 370.58 -7.30 -42.67 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.28 Total: 3.84 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.21 Total: -3.18 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.34 Total: -36.95 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: 0.29 Total: -25.99 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.37 -7.30 -42.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492319654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.216 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds