Wall clock time and date at job start Wed Apr 1 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34767 * 124.17497 * 2 1 4 4 O 1.21230 * 127.15984 * 0.06895 * 3 2 1 5 5 C 1.51583 * 105.68277 * 180.02562 * 3 2 1 6 6 N 1.47306 * 103.59497 * 0.02562 * 5 3 2 7 7 N 1.40104 * 126.69026 * 179.97438 * 6 5 3 8 8 C 1.34774 * 119.99780 * 104.99698 * 7 6 5 9 9 O 1.21723 * 120.00444 * 0.02562 * 8 7 6 10 10 C 1.46255 * 119.99903 * 179.97438 * 8 7 6 11 11 C 1.35021 * 120.00084 * 179.97438 * 10 8 7 12 12 C 1.46965 * 119.99672 * 180.02562 * 11 10 8 13 13 C 1.40021 * 120.10614 * 359.72768 * 12 11 10 14 14 C 1.37593 * 119.89994 * 179.69722 * 13 12 11 15 15 C 1.39175 * 120.10228 * 0.59943 * 14 13 12 16 16 O 1.35564 * 119.90471 * 179.69687 * 15 14 13 17 17 C 1.34777 * 117.00726 * 174.42351 * 16 15 14 18 18 H 1.08000 * 119.99657 * 5.06054 * 17 16 15 19 19 C 1.38723 * 120.00398 * 185.05598 * 17 16 15 20 20 N 1.31506 * 119.99798 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99801 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47264 * 60.00236 * 21 19 17 23 23 H 1.48504 * 109.46616 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47091 * 299.99791 * 21 19 17 25 25 C 1.39179 * 120.20099 * 359.68013 * 15 14 13 26 26 C 1.37602 * 120.10366 * 0.02562 * 25 15 14 27 27 C 1.33790 * 124.18136 * 180.30559 * 2 1 3 28 28 O 1.21539 * 123.76770 * 359.97438 * 27 2 1 29 29 H 1.09011 * 109.47154 * 90.00253 * 1 2 3 30 30 H 1.09000 * 109.47022 * 209.99375 * 1 2 3 31 31 H 1.08996 * 109.47285 * 329.99820 * 1 2 3 32 32 H 1.09000 * 110.59539 * 241.47234 * 5 3 2 33 33 H 1.09009 * 110.60106 * 118.52857 * 5 3 2 34 34 H 0.97001 * 119.99647 * 284.99977 * 7 6 5 35 35 H 1.08009 * 119.99806 * 359.72835 * 10 8 7 36 36 H 1.07994 * 120.00155 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.04663 * 0.02562 * 13 12 11 38 38 H 1.07999 * 119.95343 * 180.28136 * 14 13 12 39 39 H 0.96998 * 119.99690 * 179.97438 * 20 19 17 40 40 H 1.08000 * 119.95020 * 180.02562 * 25 15 14 41 41 H 1.07994 * 120.05258 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2220 1.1150 0.0000 4 8 1.8340 2.2635 0.0012 5 6 3.6596 0.6342 -0.0007 6 7 3.5338 -0.8335 -0.0016 7 7 4.5817 -1.7635 -0.0030 8 6 4.8860 -2.4374 1.1238 9 8 4.2501 -2.2386 2.1425 10 6 5.9795 -3.4086 1.1222 11 6 6.2847 -4.0835 2.2512 12 6 7.3839 -5.0590 2.2497 13 6 8.1124 -5.2944 1.0773 14 6 9.1448 -6.2040 1.0823 15 6 9.4573 -6.8988 2.2470 16 8 10.4712 -7.7987 2.2457 17 6 10.7993 -8.3527 3.4298 18 1 10.2101 -8.1366 4.3087 19 6 11.8936 -9.2005 3.5195 20 7 12.6112 -9.4633 2.4493 21 14 12.3477 -9.9689 5.1605 22 1 11.2143 -10.7929 5.6518 23 1 13.5472 -10.8276 4.9899 24 1 12.6431 -8.8965 6.1443 25 6 8.7321 -6.6724 3.4132 26 6 7.7020 -5.7602 3.4192 27 6 2.2166 -1.1068 -0.0059 28 8 1.7603 -2.2333 -0.0115 29 1 -0.3634 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 4.1781 0.9745 0.8957 33 1 4.1776 0.9749 -0.8972 34 1 5.0882 -1.9222 -0.8149 35 1 6.5404 -3.5889 0.2169 36 1 5.7211 -3.9064 3.1552 37 1 7.8678 -4.7588 0.1719 38 1 9.7102 -6.3829 0.1797 39 1 13.3766 -10.0558 2.5121 40 1 8.9784 -7.2136 4.3148 41 1 7.1402 -5.5849 4.3247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492319654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:22 Heat of formation + Delta-G solvation = -36.832310 kcal Electronic energy + Delta-G solvation = -27746.696835 eV Core-core repulsion = 23401.898176 eV Total energy + Delta-G solvation = -4344.798659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.46921 -40.95011 -40.66162 -39.72758 -38.50890 -37.51782 -36.68470 -34.78426 -34.13116 -33.62662 -31.94700 -30.01318 -28.67751 -28.22478 -27.47205 -25.18249 -23.88220 -23.59583 -22.66196 -21.46196 -20.95411 -19.94075 -19.40490 -18.79580 -18.68343 -18.06088 -17.93224 -17.19189 -16.76095 -16.47718 -16.46994 -16.00488 -15.69552 -15.63781 -15.56489 -15.41617 -15.15962 -14.95375 -14.86575 -14.60507 -14.09948 -13.79528 -13.60068 -13.55804 -13.31355 -13.19453 -12.68189 -12.59296 -12.45765 -12.24808 -12.14504 -11.68544 -11.37311 -11.20337 -11.12779 -11.03002 -10.95440 -10.57614 -10.27954 -9.86899 -8.69520 -8.51580 -6.17530 -0.30851 0.05852 0.45538 0.61342 1.07231 1.36528 1.46597 1.49708 1.51914 1.75889 2.15837 2.21772 2.85360 2.86620 2.89708 3.19053 3.44110 3.74086 3.77128 3.95758 4.10386 4.11694 4.25089 4.27923 4.34280 4.38203 4.40480 4.49455 4.60311 4.66295 4.72915 4.96275 5.01470 5.19736 5.22897 5.33790 5.54185 5.57809 5.65669 5.79292 5.80603 5.98141 6.12137 6.16815 6.22261 6.69012 6.92862 7.26815 7.69879 8.70020 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.038735 B = 0.001543 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.679870 B =18145.044568 C =18296.089685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.574 5.574 3 C 0.536 3.464 4 O -0.486 6.486 5 C 0.074 3.926 6 N -0.432 5.432 7 N -0.469 5.469 8 C 0.558 3.442 9 O -0.574 6.574 10 C -0.238 4.238 11 C 0.031 3.969 12 C -0.173 4.173 13 C -0.032 4.032 14 C -0.208 4.208 15 C 0.131 3.869 16 O -0.219 6.219 17 C -0.418 4.418 18 H 0.105 0.895 19 C -0.017 4.017 20 N -0.912 5.912 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.252 4.252 26 C -0.038 4.038 27 C 0.701 3.299 28 O -0.570 6.570 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.174 0.826 34 H 0.445 0.555 35 H 0.169 0.831 36 H 0.124 0.876 37 H 0.168 0.832 38 H 0.124 0.876 39 H 0.275 0.725 40 H 0.123 0.877 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.211 20.816 -6.869 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.321 5.321 3 C 0.324 3.676 4 O -0.357 6.357 5 C -0.050 4.050 6 N -0.259 5.259 7 N -0.221 5.221 8 C 0.350 3.650 9 O -0.453 6.453 10 C -0.260 4.260 11 C 0.011 3.989 12 C -0.174 4.174 13 C -0.050 4.050 14 C -0.227 4.227 15 C 0.078 3.922 16 O -0.124 6.124 17 C -0.493 4.493 18 H 0.123 0.877 19 C -0.216 4.216 20 N -0.549 5.549 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.271 4.271 26 C -0.056 4.056 27 C 0.403 3.597 28 O -0.445 6.445 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.160 0.840 33 H 0.191 0.809 34 H 0.292 0.708 35 H 0.186 0.814 36 H 0.142 0.858 37 H 0.185 0.815 38 H 0.142 0.858 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.773 20.693 -6.438 28.028 hybrid contribution 0.548 -0.901 0.413 1.132 sum -17.225 19.793 -6.025 26.922 Atomic orbital electron populations 1.22095 0.73371 1.05310 1.05100 1.46346 1.10497 1.07141 1.68109 1.20924 0.89003 0.84132 0.73537 1.90849 1.79178 1.18370 1.47295 1.23077 0.95242 0.76485 1.10165 1.45831 0.99201 1.03141 1.77729 1.44428 1.26420 1.36579 1.14670 1.19189 0.83560 0.80218 0.81990 1.90835 1.53675 1.66848 1.33950 1.22395 1.00575 1.01253 1.01765 1.22170 0.90433 0.88381 0.97897 1.18711 1.00977 1.03099 0.94613 1.21340 0.91338 0.94092 0.98205 1.20453 1.03424 1.02085 0.96730 1.20239 0.88060 0.88428 0.95427 1.83878 1.45235 1.48972 1.34285 1.21851 1.13751 1.27546 0.86168 0.87733 1.26582 0.94557 0.96976 1.03499 1.70136 1.18045 1.35530 1.31164 0.84666 0.78457 0.78343 0.74935 1.18213 1.19627 1.18141 1.21199 1.01439 1.05738 0.98711 1.21324 0.93935 0.92248 0.98140 1.16042 0.81739 0.84398 0.77550 1.90986 1.75502 1.22076 1.55889 0.89029 0.89752 0.87816 0.83993 0.80927 0.70753 0.81419 0.85813 0.81502 0.85786 0.91600 0.85917 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.73 127.77 1.37 2.30 16 2 N -0.57 -9.11 3.00 -796.66 -2.39 -11.50 16 3 C 0.54 7.02 8.32 87.94 0.73 7.75 16 4 O -0.49 -8.54 17.76 -2.88 -0.05 -8.59 16 5 C 0.07 0.56 7.88 85.76 0.68 1.24 16 6 N -0.43 -6.79 3.41 -480.32 -1.64 -8.43 16 7 N -0.47 -6.84 6.34 -176.69 -1.12 -7.96 16 8 C 0.56 12.17 7.83 86.33 0.68 12.85 16 9 O -0.57 -17.96 16.51 -4.42 -0.07 -18.03 16 10 C -0.24 -4.41 9.41 23.61 0.22 -4.19 16 11 C 0.03 0.73 9.45 23.82 0.23 0.96 16 12 C -0.17 -4.89 5.87 -20.12 -0.12 -5.00 16 13 C -0.03 -0.90 9.40 22.55 0.21 -0.69 16 14 C -0.21 -7.77 9.97 22.34 0.22 -7.55 16 15 C 0.13 6.00 6.66 22.72 0.15 6.16 16 16 O -0.22 -12.39 9.74 -20.15 -0.20 -12.59 16 17 C -0.42 -23.08 9.48 67.94 0.64 -22.44 16 18 H 0.11 5.27 5.18 -2.91 -0.02 5.26 16 19 C -0.02 -0.93 5.49 84.86 0.47 -0.46 16 20 N -0.91 -53.51 13.67 21.62 0.30 -53.22 16 21 Si 1.02 40.88 29.55 68.60 2.03 42.91 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 25 C -0.25 -10.17 9.14 22.35 0.20 -9.97 16 26 C -0.04 -1.23 9.79 22.55 0.22 -1.01 16 27 C 0.70 15.08 8.35 179.44 1.50 16.57 16 28 O -0.57 -17.29 17.43 -3.84 -0.07 -17.36 16 29 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 1.10 7.87 -2.39 -0.02 1.08 16 31 H 0.10 0.90 8.00 -2.39 -0.02 0.88 16 32 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.17 -0.11 8.14 -2.38 -0.02 -0.13 16 34 H 0.45 2.67 8.81 -213.32 -1.88 0.79 16 35 H 0.17 1.88 6.07 -2.91 -0.02 1.86 16 36 H 0.12 3.04 7.52 -2.91 -0.02 3.02 16 37 H 0.17 3.00 6.16 -2.91 -0.02 2.98 16 38 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.12 5.06 5.62 -2.91 -0.02 5.05 16 41 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -85.09 370.58 3.42 -81.67 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.76 Total: 16.57 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 7.40 Total: -3.48 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -4.86 Total: -81.10 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -0.39 Total: -56.56 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -85.09 3.42 -81.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492319654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.837 kcal (2) G-P(sol) polarization free energy of solvation -85.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds