Wall clock time and date at job start Wed Apr 1 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35328 * 117.00100 * 2 1 4 4 N 1.32463 * 118.98813 * 359.73153 * 3 2 1 5 5 C 1.32005 * 120.94451 * 180.27997 * 4 3 2 6 6 C 1.40288 * 118.95279 * 0.02562 * 5 4 3 7 7 C 1.47046 * 120.91029 * 180.02562 * 6 5 4 8 8 C 1.34946 * 119.99908 * 359.97153 * 7 6 5 9 9 C 1.46272 * 120.00088 * 180.02562 * 8 7 6 10 10 O 1.21721 * 120.00073 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00205 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00111 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46917 * 90.00461 * 12 11 9 14 14 H 1.08005 * 120.00174 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99949 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99603 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46863 * 60.00039 * 17 15 13 19 19 H 1.48504 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47255 * 300.00217 * 17 15 13 21 21 C 1.46504 * 119.99476 * 0.02562 * 11 9 8 22 22 C 1.53004 * 109.46730 * 90.00301 * 21 11 9 23 23 F 1.39897 * 109.47473 * 59.99718 * 22 21 11 24 24 F 1.39900 * 109.46533 * 179.97438 * 22 21 11 25 25 F 1.39904 * 109.47001 * 299.99151 * 22 21 11 26 26 C 1.40293 * 118.18355 * 359.97438 * 6 5 4 27 27 N 1.31999 * 118.95565 * 0.02562 * 26 6 5 28 28 H 1.08995 * 109.47012 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46733 * 300.00056 * 1 2 3 30 30 H 1.08999 * 109.47007 * 59.99892 * 1 2 3 31 31 H 1.07994 * 120.52298 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.00160 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.99937 * 0.02562 * 8 7 6 34 34 H 1.09003 * 109.46919 * 209.99770 * 12 11 9 35 35 H 1.08999 * 109.47352 * 330.00238 * 12 11 9 36 36 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.46476 * 209.99809 * 21 11 9 38 38 H 1.08991 * 109.47439 * 329.99937 * 21 11 9 39 39 H 1.08004 * 120.52496 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 1.3025 2.3038 -0.0054 5 6 1.8613 3.4997 -0.0112 6 6 3.2609 3.5953 -0.0120 7 6 3.9286 4.9055 -0.0178 8 6 3.1937 6.0372 -0.0229 9 6 3.8577 7.3405 -0.0292 10 8 5.0733 7.4042 -0.0302 11 7 3.1237 8.4709 -0.0348 12 6 3.7889 9.7761 -0.0405 13 6 4.0176 10.2171 -1.4633 14 1 3.6997 9.5878 -2.2815 15 6 4.6336 11.4235 -1.7206 16 7 5.0211 12.1895 -0.7243 17 14 4.9177 11.9698 -3.4842 18 1 3.6132 12.0763 -4.1856 19 1 5.5919 13.2930 -3.4900 20 1 5.7734 10.9747 -4.1789 21 6 1.6607 8.3941 -0.0341 22 6 1.1518 8.3749 1.4087 23 9 1.5579 9.5434 2.0621 24 9 -0.2453 8.3022 1.4093 25 9 1.6774 7.2619 2.0738 26 6 4.0063 2.4068 -0.0061 27 7 3.3673 1.2518 -0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.2507 4.3904 -0.0152 32 1 5.0071 4.9620 -0.0179 33 1 2.1151 5.9807 -0.0224 34 1 3.1605 10.5063 0.4696 35 1 4.7465 9.6982 0.4741 36 1 5.4542 13.0384 -0.9053 37 1 1.2512 9.2613 -0.5523 38 1 1.3443 7.4838 -0.5431 39 1 5.0859 2.4363 -0.0061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492644953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:37 Heat of formation + Delta-G solvation = -145.033415 kcal Electronic energy + Delta-G solvation = -30004.249025 eV Core-core repulsion = 25112.901674 eV Total energy + Delta-G solvation = -4891.347352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.88381 -47.44474 -47.31544 -41.51482 -39.38297 -38.68099 -35.50816 -34.63053 -34.11142 -32.82895 -30.34080 -29.34571 -27.97299 -27.09226 -25.32856 -24.50250 -23.35617 -23.11355 -21.00677 -19.25964 -19.03770 -18.52958 -18.34142 -17.98733 -17.21997 -16.90950 -16.73403 -16.19051 -15.65144 -15.46282 -14.87748 -14.72449 -14.42821 -14.37888 -14.29021 -14.19606 -14.08870 -13.93632 -13.80867 -13.54234 -13.48696 -13.12326 -12.61278 -12.38540 -12.37116 -12.11126 -11.96173 -11.86560 -11.43177 -11.31365 -11.30041 -11.04157 -10.67811 -10.50131 -10.28460 -9.84398 -9.53804 -9.33432 -8.54298 -8.52423 -8.07673 -6.14180 -4.20435 0.13252 0.71568 1.80208 2.22818 2.87022 3.26160 3.31208 3.31729 3.40482 3.44476 3.63939 3.70206 4.10910 4.14282 4.18274 4.29337 4.31405 4.36746 4.53383 4.63306 4.83627 4.90223 4.92693 5.12223 5.18473 5.20138 5.25809 5.34563 5.49299 5.76189 6.05706 6.21222 6.34264 6.77170 6.82894 7.19098 7.30990 7.69535 7.79825 7.99173 8.07824 8.64626 8.84245 9.44985 10.94055 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002907 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.323253 B = 9628.552621 C =10882.457714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.289 6.289 3 C 0.496 3.504 4 N -0.564 5.564 5 C 0.201 3.799 6 C -0.204 4.204 7 C -0.026 4.026 8 C -0.191 4.191 9 C 0.543 3.457 10 O -0.521 6.521 11 N -0.590 5.590 12 C 0.242 3.758 13 C -0.535 4.535 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.072 3.928 22 C 0.426 3.574 23 F -0.174 7.174 24 F -0.188 7.188 25 F -0.185 7.185 26 C 0.210 3.790 27 N -0.523 5.523 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.176 0.824 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.266 0.734 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 -17.702 2.394 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.190 6.190 3 C 0.195 3.805 4 N -0.293 5.293 5 C 0.035 3.965 6 C -0.209 4.209 7 C -0.047 4.047 8 C -0.212 4.212 9 C 0.332 3.668 10 O -0.398 6.398 11 N -0.320 5.320 12 C 0.124 3.876 13 C -0.573 4.573 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.056 4.056 22 C 0.370 3.630 23 F -0.155 7.155 24 F -0.170 7.170 25 F -0.167 7.167 26 C 0.043 3.957 27 N -0.247 5.247 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.192 0.808 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.149 0.851 38 H 0.130 0.870 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.737 -18.711 2.473 21.714 hybrid contribution 0.029 1.396 -0.653 1.541 sum -10.708 -17.316 1.820 20.440 Atomic orbital electron populations 1.23029 0.75457 1.03650 1.03068 1.86059 1.23555 1.22762 1.86629 1.20856 0.86261 0.84829 0.88531 1.68027 1.41188 0.99123 1.20964 1.23325 0.91923 0.94329 0.86914 1.20656 0.95466 0.95980 1.08840 1.21916 1.00652 0.88582 0.93586 1.23175 1.00024 0.93296 1.04690 1.18075 0.87245 0.83989 0.77441 1.90825 1.13191 1.87085 1.48692 1.48108 1.03040 1.09457 1.71438 1.19531 0.94045 0.75944 0.98070 1.21330 1.40131 1.03996 0.91862 0.92247 1.24931 0.95072 0.96325 0.97580 1.69922 1.39825 1.12120 1.30987 0.86529 0.78473 0.77844 0.84403 1.20183 1.21128 1.20114 1.22660 0.85353 1.08085 0.89463 1.21695 0.75060 0.73877 0.92335 1.93225 1.90113 1.48535 1.83639 1.93160 1.30579 1.96130 1.97095 1.93170 1.86393 1.53593 1.83548 1.23487 1.00853 0.84790 0.86593 1.67561 1.07394 1.30402 1.19342 0.87790 0.91714 0.91716 0.80764 0.83717 0.86061 0.94042 0.93164 0.92461 0.85116 0.86999 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.35 101.05 1.05 1.35 16 2 O -0.29 -3.19 10.55 -17.67 -0.19 -3.37 16 3 C 0.50 5.98 8.48 -91.00 -0.77 5.21 16 4 N -0.56 -6.28 9.18 -14.33 -0.13 -6.41 16 5 C 0.20 2.01 10.68 -16.71 -0.18 1.83 16 6 C -0.20 -2.10 5.90 -104.78 -0.62 -2.71 16 7 C -0.03 -0.31 9.49 -37.18 -0.35 -0.66 16 8 C -0.19 -2.53 7.50 -37.52 -0.28 -2.81 16 9 C 0.54 10.21 7.29 -13.03 -0.09 10.12 16 10 O -0.52 -11.98 15.81 5.17 0.08 -11.90 16 11 N -0.59 -11.27 2.37 -176.75 -0.42 -11.69 16 12 C 0.24 5.90 4.95 -5.19 -0.03 5.88 16 13 C -0.53 -14.17 9.39 -34.44 -0.32 -14.49 16 14 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 17 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.07 1.01 5.24 -4.04 -0.02 0.99 16 22 C 0.43 5.99 3.29 37.16 0.12 6.11 16 23 F -0.17 -2.95 16.22 2.25 0.04 -2.91 16 24 F -0.19 -2.36 17.32 2.25 0.04 -2.32 16 25 F -0.19 -2.63 15.35 2.25 0.03 -2.59 16 26 C 0.21 2.07 11.10 -16.71 -0.19 1.89 16 27 N -0.52 -6.33 10.44 -14.33 -0.15 -6.48 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.18 1.33 6.30 -52.49 -0.33 1.00 16 32 H 0.15 1.72 7.52 -52.48 -0.39 1.33 16 33 H 0.12 1.23 3.92 -52.48 -0.21 1.03 16 34 H 0.04 1.03 7.25 -51.93 -0.38 0.65 16 35 H 0.05 1.40 7.42 -51.93 -0.39 1.02 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.13 1.76 8.07 -51.93 -0.42 1.34 16 38 H 0.11 1.12 6.09 -51.93 -0.32 0.80 16 39 H 0.19 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -33.76 355.57 -5.06 -38.83 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.66 Total: -2.01 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: -1.78 Total: 14.34 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.04 Total: -49.31 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.10 Total: -15.27 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.11 Total: -7.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.76 -5.06 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492644953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.207 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds