Wall clock time and date at job start Wed Apr 1 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35328 * 117.00100 * 2 1 4 4 N 1.32463 * 118.98813 * 359.73153 * 3 2 1 5 5 C 1.32005 * 120.94451 * 180.27997 * 4 3 2 6 6 C 1.40288 * 118.95279 * 0.02562 * 5 4 3 7 7 C 1.47046 * 120.91029 * 180.02562 * 6 5 4 8 8 C 1.34946 * 119.99908 * 359.97153 * 7 6 5 9 9 C 1.46272 * 120.00088 * 180.02562 * 8 7 6 10 10 O 1.21721 * 120.00073 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00205 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00111 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46917 * 90.00461 * 12 11 9 14 14 H 1.08005 * 120.00174 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99949 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99603 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46863 * 60.00039 * 17 15 13 19 19 H 1.48504 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47255 * 300.00217 * 17 15 13 21 21 C 1.46504 * 119.99476 * 0.02562 * 11 9 8 22 22 C 1.53004 * 109.46730 * 90.00301 * 21 11 9 23 23 F 1.39897 * 109.47473 * 59.99718 * 22 21 11 24 24 F 1.39900 * 109.46533 * 179.97438 * 22 21 11 25 25 F 1.39904 * 109.47001 * 299.99151 * 22 21 11 26 26 C 1.40293 * 118.18355 * 359.97438 * 6 5 4 27 27 N 1.31999 * 118.95565 * 0.02562 * 26 6 5 28 28 H 1.08995 * 109.47012 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46733 * 300.00056 * 1 2 3 30 30 H 1.08999 * 109.47007 * 59.99892 * 1 2 3 31 31 H 1.07994 * 120.52298 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.00160 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.99937 * 0.02562 * 8 7 6 34 34 H 1.09003 * 109.46919 * 209.99770 * 12 11 9 35 35 H 1.08999 * 109.47352 * 330.00238 * 12 11 9 36 36 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.46476 * 209.99809 * 21 11 9 38 38 H 1.08991 * 109.47439 * 329.99937 * 21 11 9 39 39 H 1.08004 * 120.52496 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 1.3025 2.3038 -0.0054 5 6 1.8613 3.4997 -0.0112 6 6 3.2609 3.5953 -0.0120 7 6 3.9286 4.9055 -0.0178 8 6 3.1937 6.0372 -0.0229 9 6 3.8577 7.3405 -0.0292 10 8 5.0733 7.4042 -0.0302 11 7 3.1237 8.4709 -0.0348 12 6 3.7889 9.7761 -0.0405 13 6 4.0176 10.2171 -1.4633 14 1 3.6997 9.5878 -2.2815 15 6 4.6336 11.4235 -1.7206 16 7 5.0211 12.1895 -0.7243 17 14 4.9177 11.9698 -3.4842 18 1 3.6132 12.0763 -4.1856 19 1 5.5919 13.2930 -3.4900 20 1 5.7734 10.9747 -4.1789 21 6 1.6607 8.3941 -0.0341 22 6 1.1518 8.3749 1.4087 23 9 1.5579 9.5434 2.0621 24 9 -0.2453 8.3022 1.4093 25 9 1.6774 7.2619 2.0738 26 6 4.0063 2.4068 -0.0061 27 7 3.3673 1.2518 -0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.2507 4.3904 -0.0152 32 1 5.0071 4.9620 -0.0179 33 1 2.1151 5.9807 -0.0224 34 1 3.1605 10.5063 0.4696 35 1 4.7465 9.6982 0.4741 36 1 5.4542 13.0384 -0.9053 37 1 1.2512 9.2613 -0.5523 38 1 1.3443 7.4838 -0.5431 39 1 5.0859 2.4363 -0.0061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492644953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:36 Heat of formation + Delta-G solvation = -169.666504 kcal Electronic energy + Delta-G solvation = -30005.317196 eV Core-core repulsion = 25112.901674 eV Total energy + Delta-G solvation = -4892.415523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.02894 -48.53605 -48.52997 -42.31915 -40.81199 -39.47256 -37.01590 -35.64179 -34.96334 -34.77470 -31.44860 -30.69650 -29.04519 -28.30632 -26.29152 -25.62941 -24.67044 -24.38629 -22.24574 -20.29431 -19.90649 -19.63346 -19.47847 -19.17374 -18.68380 -18.21439 -17.73893 -17.48885 -17.03462 -16.45303 -16.17516 -15.82291 -15.66154 -15.46836 -15.41638 -15.36277 -15.05597 -14.95267 -14.76637 -14.66915 -14.65058 -14.53913 -14.26790 -13.70477 -13.52525 -13.15475 -13.04355 -12.90589 -12.84231 -12.60525 -12.52195 -12.33982 -12.19247 -12.12188 -11.77111 -11.38018 -10.86457 -10.61287 -10.34006 -9.80936 -9.37317 -8.20536 -6.34852 -0.76941 -0.04340 0.77590 1.41615 1.45101 1.51939 1.52335 1.71251 2.01447 2.31968 2.43189 2.70748 2.88650 2.94724 3.07068 3.09988 3.18380 3.39909 3.54551 3.59395 3.75436 3.93316 4.15111 4.17592 4.38933 4.39470 4.43196 4.60391 4.71997 4.86622 5.01820 5.18074 5.23889 5.28117 5.44888 5.57039 5.76237 6.01242 6.04054 6.48307 6.74104 6.89462 7.20665 7.37708 8.87207 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002907 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.323253 B = 9628.552621 C =10882.457714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.488 3.512 4 N -0.570 5.570 5 C 0.206 3.794 6 C -0.212 4.212 7 C 0.008 3.992 8 C -0.208 4.208 9 C 0.538 3.462 10 O -0.579 6.579 11 N -0.598 5.598 12 C 0.259 3.741 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.258 1.258 19 H -0.284 1.284 20 H -0.277 1.277 21 C 0.069 3.931 22 C 0.432 3.568 23 F -0.196 7.196 24 F -0.174 7.174 25 F -0.184 7.184 26 C 0.216 3.784 27 N -0.548 5.548 28 H 0.131 0.869 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.202 0.798 32 H 0.139 0.861 33 H 0.157 0.843 34 H 0.031 0.969 35 H 0.002 0.998 36 H 0.267 0.733 37 H 0.136 0.864 38 H 0.161 0.839 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.984 -19.389 1.163 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.206 6.206 3 C 0.187 3.813 4 N -0.299 5.299 5 C 0.041 3.959 6 C -0.217 4.217 7 C -0.013 4.013 8 C -0.228 4.228 9 C 0.330 3.670 10 O -0.460 6.460 11 N -0.327 5.327 12 C 0.139 3.861 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.791 3.209 18 H -0.183 1.183 19 H -0.209 1.209 20 H -0.202 1.202 21 C -0.057 4.057 22 C 0.376 3.624 23 F -0.177 7.177 24 F -0.156 7.156 25 F -0.165 7.165 26 C 0.050 3.950 27 N -0.273 5.273 28 H 0.149 0.851 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.219 0.781 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.178 0.822 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.737 -20.430 1.247 24.107 hybrid contribution 0.590 1.755 -0.208 1.863 sum -12.147 -18.675 1.038 22.302 Atomic orbital electron populations 1.23304 0.73524 1.05574 1.03198 1.86054 1.25541 1.22693 1.86290 1.21153 0.86570 0.85440 0.88127 1.68117 1.41003 0.99209 1.21587 1.23800 0.92089 0.94854 0.85167 1.20507 0.95770 0.95114 1.10332 1.21932 1.00454 0.88842 0.90094 1.22906 1.01448 0.90343 1.08138 1.18915 0.86759 0.85506 0.75786 1.90788 1.15789 1.87995 1.51470 1.47939 1.05399 1.07779 1.71621 1.18915 0.92234 0.78473 0.96516 1.21666 1.39658 1.04000 0.92802 0.91881 1.25843 0.94852 0.96579 1.01781 1.70056 1.40858 1.12577 1.33237 0.85477 0.78954 0.77124 0.79313 1.18285 1.20949 1.20219 1.23016 0.81987 1.10889 0.89834 1.21594 0.75581 0.73192 0.92000 1.93189 1.90464 1.49967 1.84125 1.93190 1.29338 1.96012 1.97013 1.93175 1.86483 1.53318 1.83572 1.23968 1.02116 0.84153 0.84719 1.67631 1.07780 1.31300 1.20617 0.85081 0.91573 0.91493 0.78134 0.84281 0.82548 0.95128 0.97952 0.92455 0.84603 0.82168 0.77188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.35 113.37 1.17 1.63 16 2 O -0.30 -6.23 10.55 -86.16 -0.91 -7.14 16 3 C 0.49 10.86 8.48 180.48 1.53 12.40 16 4 N -0.57 -11.21 9.18 -312.20 -2.87 -14.08 16 5 C 0.21 3.45 10.68 85.17 0.91 4.36 16 6 C -0.21 -3.77 5.90 -19.97 -0.12 -3.89 16 7 C 0.01 0.17 9.49 23.82 0.23 0.39 16 8 C -0.21 -5.05 7.50 23.60 0.18 -4.88 16 9 C 0.54 20.19 7.29 86.33 0.63 20.82 16 10 O -0.58 -27.61 15.81 -4.42 -0.07 -27.68 16 11 N -0.60 -22.85 2.37 -831.32 -1.97 -24.82 16 12 C 0.26 13.12 4.95 85.63 0.42 13.55 16 13 C -0.54 -29.22 9.39 25.60 0.24 -28.98 16 14 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 15 C 0.01 0.49 5.46 84.65 0.46 0.95 16 16 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 17 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C 0.07 1.77 5.24 86.38 0.45 2.22 16 22 C 0.43 11.40 3.29 71.98 0.24 11.64 16 23 F -0.20 -6.65 16.22 44.97 0.73 -5.92 16 24 F -0.17 -3.90 17.32 44.97 0.78 -3.12 16 25 F -0.18 -4.83 15.35 44.97 0.69 -4.14 16 26 C 0.22 3.80 11.10 85.17 0.95 4.74 16 27 N -0.55 -12.31 10.44 -312.19 -3.26 -15.57 16 28 H 0.13 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.20 2.12 6.30 -2.91 -0.02 2.10 16 32 H 0.14 3.16 7.52 -2.91 -0.02 3.14 16 33 H 0.16 2.53 3.92 -2.91 -0.01 2.52 16 34 H 0.03 1.59 7.25 -2.39 -0.02 1.58 16 35 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 36 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.14 3.42 8.07 -2.39 -0.02 3.40 16 38 H 0.16 2.54 6.09 -2.39 -0.01 2.53 16 39 H 0.21 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -76.72 355.57 3.85 -72.87 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.13 Total: 3.94 kcal Atomic # 6 Polarization: 27.66 SS G_CDS: 7.29 Total: 34.95 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -7.82 Total: -108.73 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.98 Total: -34.82 kcal Atomic # 9 Polarization: -15.38 SS G_CDS: 2.20 Total: -13.19 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -76.72 3.85 -72.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492644953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.795 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds