Wall clock time and date at job start Wed Apr 1 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34218 * 116.99821 * 2 1 4 4 O 1.20825 * 120.00696 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00042 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47378 * 180.02562 * 5 3 2 7 7 C 1.34971 * 125.97538 * 124.97537 * 6 5 3 8 8 C 1.35231 * 107.86474 * 179.72714 * 7 6 5 9 9 C 1.40419 * 107.86663 * 0.42825 * 8 7 6 10 10 N 1.40088 * 125.97367 * 179.82696 * 9 8 7 11 11 C 1.34775 * 120.00196 * 359.71908 * 10 9 8 12 12 O 1.21604 * 119.99983 * 359.97438 * 11 10 9 13 13 C 1.47507 * 120.00067 * 180.02562 * 11 10 9 14 14 C 1.39673 * 120.19871 * 359.97438 * 13 11 10 15 15 C 1.37824 * 119.92019 * 179.97438 * 14 13 11 16 16 C 1.38582 * 120.32372 * 0.02562 * 15 14 13 17 17 C 1.38026 * 120.40158 * 359.97438 * 16 15 14 18 18 C 1.38828 * 120.07266 * 0.02562 * 17 16 15 19 19 O 1.35523 * 120.15966 * 180.02562 * 18 17 16 20 20 C 1.34810 * 117.00007 * 354.40894 * 19 18 17 21 21 H 1.08001 * 120.00342 * 5.07560 * 20 19 18 22 22 C 1.38699 * 120.00057 * 185.07938 * 20 19 18 23 23 N 1.31515 * 120.00424 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00078 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47044 * 59.99495 * 24 22 20 26 26 H 1.48498 * 109.47176 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47008 * 299.99984 * 24 22 20 28 28 N 1.31229 * 108.04781 * 359.56612 * 9 8 7 29 29 H 1.08991 * 109.47393 * 59.99848 * 1 2 3 30 30 H 1.09009 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46996 * 299.99592 * 1 2 3 32 32 H 1.08997 * 109.47073 * 60.00011 * 5 3 2 33 33 H 1.09000 * 109.46953 * 300.00394 * 5 3 2 34 34 H 1.08004 * 126.06536 * 0.03985 * 7 6 5 35 35 H 1.08000 * 126.06447 * 180.25933 * 8 7 6 36 36 H 0.97003 * 119.99604 * 179.71709 * 10 9 8 37 37 H 1.08001 * 120.04431 * 359.95434 * 14 13 11 38 38 H 1.08003 * 119.83834 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.79578 * 179.97438 * 16 15 14 40 40 H 1.07998 * 119.96336 * 179.75193 * 17 16 15 41 41 H 0.96999 * 120.00900 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.8073 3.2619 0.8952 8 6 4.9453 4.5616 0.5480 9 6 4.1665 4.7863 -0.5986 10 7 4.0317 6.0051 -1.2759 11 6 4.6807 7.0990 -0.8305 12 8 5.3830 7.0282 0.1598 13 6 4.5383 8.3825 -1.5434 14 6 3.7323 8.4687 -2.6808 15 6 3.6029 9.6709 -3.3422 16 6 4.2695 10.7965 -2.8847 17 6 5.0694 10.7264 -1.7620 18 6 5.2115 9.5239 -1.0831 19 8 5.9961 9.4532 0.0197 20 6 6.7029 10.5557 0.3397 21 1 6.5667 11.4669 -0.2238 22 6 7.6051 10.5197 1.3925 23 7 7.7708 9.4103 2.0790 24 14 8.5841 12.0476 1.8363 25 1 7.6515 13.1446 2.2001 26 1 9.4710 11.7496 2.9894 27 1 9.4072 12.4634 0.6724 28 7 3.5915 3.6536 -0.9279 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 5.2785 2.7749 1.7362 35 1 5.5457 5.2969 1.0630 36 1 3.4712 6.0616 -2.0656 37 1 3.2114 7.5943 -3.0419 38 1 2.9790 9.7362 -4.2214 39 1 4.1623 11.7342 -3.4098 40 1 5.5888 11.6070 -1.4140 41 1 8.4015 9.3852 2.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727665917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:05 Heat of formation + Delta-G solvation = -9.191158 kcal Electronic energy + Delta-G solvation = -28911.539276 eV Core-core repulsion = 24567.939227 eV Total energy + Delta-G solvation = -4343.600049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29060 -40.47670 -39.56249 -38.12269 -36.76528 -36.38581 -34.53127 -32.68925 -32.37069 -30.55989 -29.77403 -28.97418 -28.60545 -26.61078 -25.42069 -23.61288 -21.99954 -21.70341 -21.22107 -20.37103 -19.51967 -18.09928 -17.99361 -17.55383 -17.38209 -16.88981 -16.59415 -16.13730 -15.62602 -14.99592 -14.70386 -14.44581 -14.36777 -14.26045 -13.95908 -13.78251 -13.61116 -13.22776 -13.07508 -12.98836 -12.63168 -12.53752 -12.47373 -12.39725 -11.73843 -11.38541 -11.14656 -11.12739 -10.95488 -10.89571 -10.83693 -10.49957 -10.44722 -10.35611 -9.59398 -8.91054 -8.89460 -8.55864 -8.34908 -7.92772 -7.34507 -6.47533 -4.07028 1.57200 1.79887 1.88512 2.18905 2.29613 2.58042 3.08237 3.10950 3.12974 3.15276 3.56268 3.83426 3.91570 4.33414 4.42154 4.60832 4.73351 4.77601 4.86127 4.88993 5.03022 5.13732 5.18146 5.31487 5.48798 5.56226 5.71067 5.88677 5.99764 6.05183 6.08034 6.13333 6.52359 6.59437 6.65168 6.88717 7.02604 7.03803 7.18613 7.25698 7.30362 7.43679 7.56027 7.65552 7.90571 8.22149 8.89059 8.93563 9.62603 10.65999 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.002529 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.037901 B =11066.845759 C =12675.594842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.440 3.560 4 O -0.471 6.471 5 C 0.159 3.841 6 N -0.380 5.380 7 C 0.056 3.944 8 C -0.249 4.249 9 C 0.318 3.682 10 N -0.645 5.645 11 C 0.562 3.438 12 O -0.475 6.475 13 C -0.227 4.227 14 C -0.036 4.036 15 C -0.229 4.229 16 C -0.048 4.048 17 C -0.236 4.236 18 C 0.192 3.808 19 O -0.122 6.122 20 C -0.403 4.403 21 H 0.094 0.906 22 C 0.046 3.954 23 N -0.831 5.831 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.268 1.268 28 N -0.315 5.315 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.408 0.592 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -15.456 -5.023 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.280 6.280 3 C 0.279 3.721 4 O -0.354 6.354 5 C 0.035 3.965 6 N -0.166 5.166 7 C -0.086 4.086 8 C -0.279 4.279 9 C 0.061 3.939 10 N -0.296 5.296 11 C 0.352 3.648 12 O -0.346 6.346 13 C -0.232 4.232 14 C -0.055 4.055 15 C -0.248 4.248 16 C -0.066 4.066 17 C -0.255 4.255 18 C 0.132 3.868 19 O -0.020 6.020 20 C -0.479 4.479 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.462 5.462 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.193 1.193 28 N -0.145 5.145 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.195 0.805 35 H 0.198 0.802 36 H 0.244 0.756 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.054 -16.094 -4.649 19.042 hybrid contribution 0.315 1.214 0.258 1.281 sum -8.738 -14.880 -4.391 17.806 Atomic orbital electron populations 1.23275 0.75828 1.03702 1.02797 1.86457 1.23819 1.33062 1.84624 1.23854 0.92177 0.81971 0.74105 1.90790 1.66280 1.36043 1.42296 1.20813 0.88395 0.79973 1.07352 1.47434 1.39120 1.07079 1.22971 1.22563 0.96134 0.94005 0.95935 1.22135 1.08730 0.96553 1.00511 1.19249 0.95100 0.86485 0.93088 1.42836 1.50269 1.05563 1.30911 1.18312 0.79316 0.82561 0.84562 1.90861 1.36080 1.83619 1.24041 1.18567 1.11072 0.91531 1.02047 1.20797 0.94698 0.97282 0.92709 1.20472 1.07434 0.93426 1.03445 1.20928 0.93771 0.97497 0.94449 1.21155 1.06281 0.98414 0.99645 1.19200 0.89675 0.91650 0.86297 1.84153 1.47055 1.37509 1.33246 1.21460 1.20180 0.89437 1.16830 0.88831 1.25382 0.96702 0.98699 0.95461 1.70100 1.32316 1.25865 1.17900 0.85792 0.79259 0.79850 0.78601 1.19352 1.20140 1.19338 1.77389 1.25838 0.96164 1.15092 0.91750 0.87925 0.91834 0.85872 0.84550 0.80545 0.80219 0.75615 0.86903 0.87084 0.87037 0.84916 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.22 10.56 -39.23 -0.41 -3.64 16 3 C 0.44 4.89 7.99 36.01 0.29 5.18 16 4 O -0.47 -7.40 15.45 -18.75 -0.29 -7.69 16 5 C 0.16 1.37 7.10 -5.19 -0.04 1.33 16 6 N -0.38 -5.25 3.40 -62.56 -0.21 -5.46 16 7 C 0.06 0.78 11.43 -17.24 -0.20 0.58 16 8 C -0.25 -4.64 9.60 -39.83 -0.38 -5.02 16 9 C 0.32 6.06 8.11 -154.45 -1.25 4.81 16 10 N -0.64 -12.07 5.40 -12.09 -0.07 -12.13 16 11 C 0.56 12.58 7.73 -12.48 -0.10 12.48 16 12 O -0.48 -12.57 12.29 -16.58 -0.20 -12.77 16 13 C -0.23 -4.92 5.89 -104.82 -0.62 -5.54 16 14 C -0.04 -0.62 9.53 -39.20 -0.37 -1.00 16 15 C -0.23 -3.73 10.03 -39.61 -0.40 -4.13 16 16 C -0.05 -0.83 10.03 -39.53 -0.40 -1.23 16 17 C -0.24 -4.96 9.16 -39.44 -0.36 -5.32 16 18 C 0.19 4.68 6.66 -38.60 -0.26 4.42 16 19 O -0.12 -3.51 7.84 -21.05 -0.16 -3.67 16 20 C -0.40 -11.17 9.49 30.90 0.29 -10.87 16 21 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 22 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 23 N -0.83 -24.43 13.67 55.48 0.76 -23.67 16 24 Si 0.94 20.15 29.55 -169.99 -5.02 15.12 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 N -0.32 -5.51 11.66 31.43 0.37 -5.15 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 30 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.46 8.13 -51.92 -0.42 0.04 16 32 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.14 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.18 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.18 3.86 5.91 -52.49 -0.31 3.55 16 36 H 0.41 6.37 6.85 -40.82 -0.28 6.09 16 37 H 0.11 1.55 6.40 -52.49 -0.34 1.22 16 38 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -38.18 363.05 -6.60 -44.78 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.01 Total: 10.63 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.82 Total: -1.83 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.85 Total: -46.41 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -1.07 Total: -27.77 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.18 -6.60 -44.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727665917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.592 kcal (2) G-P(sol) polarization free energy of solvation -38.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds