Wall clock time and date at job start Wed Apr 1 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34218 * 116.99821 * 2 1 4 4 O 1.20825 * 120.00696 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00042 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47378 * 180.02562 * 5 3 2 7 7 C 1.34971 * 125.97538 * 124.97537 * 6 5 3 8 8 C 1.35231 * 107.86474 * 179.72714 * 7 6 5 9 9 C 1.40419 * 107.86663 * 0.42825 * 8 7 6 10 10 N 1.40088 * 125.97367 * 179.82696 * 9 8 7 11 11 C 1.34775 * 120.00196 * 359.71908 * 10 9 8 12 12 O 1.21604 * 119.99983 * 359.97438 * 11 10 9 13 13 C 1.47507 * 120.00067 * 180.02562 * 11 10 9 14 14 C 1.39673 * 120.19871 * 359.97438 * 13 11 10 15 15 C 1.37824 * 119.92019 * 179.97438 * 14 13 11 16 16 C 1.38582 * 120.32372 * 0.02562 * 15 14 13 17 17 C 1.38026 * 120.40158 * 359.97438 * 16 15 14 18 18 C 1.38828 * 120.07266 * 0.02562 * 17 16 15 19 19 O 1.35523 * 120.15966 * 180.02562 * 18 17 16 20 20 C 1.34810 * 117.00007 * 354.40894 * 19 18 17 21 21 H 1.08001 * 120.00342 * 5.07560 * 20 19 18 22 22 C 1.38699 * 120.00057 * 185.07938 * 20 19 18 23 23 N 1.31515 * 120.00424 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00078 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47044 * 59.99495 * 24 22 20 26 26 H 1.48498 * 109.47176 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47008 * 299.99984 * 24 22 20 28 28 N 1.31229 * 108.04781 * 359.56612 * 9 8 7 29 29 H 1.08991 * 109.47393 * 59.99848 * 1 2 3 30 30 H 1.09009 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46996 * 299.99592 * 1 2 3 32 32 H 1.08997 * 109.47073 * 60.00011 * 5 3 2 33 33 H 1.09000 * 109.46953 * 300.00394 * 5 3 2 34 34 H 1.08004 * 126.06536 * 0.03985 * 7 6 5 35 35 H 1.08000 * 126.06447 * 180.25933 * 8 7 6 36 36 H 0.97003 * 119.99604 * 179.71709 * 10 9 8 37 37 H 1.08001 * 120.04431 * 359.95434 * 14 13 11 38 38 H 1.08003 * 119.83834 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.79578 * 179.97438 * 16 15 14 40 40 H 1.07998 * 119.96336 * 179.75193 * 17 16 15 41 41 H 0.96999 * 120.00900 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.8073 3.2619 0.8952 8 6 4.9453 4.5616 0.5480 9 6 4.1665 4.7863 -0.5986 10 7 4.0317 6.0051 -1.2759 11 6 4.6807 7.0990 -0.8305 12 8 5.3830 7.0282 0.1598 13 6 4.5383 8.3825 -1.5434 14 6 3.7323 8.4687 -2.6808 15 6 3.6029 9.6709 -3.3422 16 6 4.2695 10.7965 -2.8847 17 6 5.0694 10.7264 -1.7620 18 6 5.2115 9.5239 -1.0831 19 8 5.9961 9.4532 0.0197 20 6 6.7029 10.5557 0.3397 21 1 6.5667 11.4669 -0.2238 22 6 7.6051 10.5197 1.3925 23 7 7.7708 9.4103 2.0790 24 14 8.5841 12.0476 1.8363 25 1 7.6515 13.1446 2.2001 26 1 9.4710 11.7496 2.9894 27 1 9.4072 12.4634 0.6724 28 7 3.5915 3.6536 -0.9279 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7805 0.8891 34 1 5.2785 2.7749 1.7362 35 1 5.5457 5.2969 1.0630 36 1 3.4712 6.0616 -2.0656 37 1 3.2114 7.5943 -3.0419 38 1 2.9790 9.7362 -4.2214 39 1 4.1623 11.7342 -3.4098 40 1 5.5888 11.6070 -1.4140 41 1 8.4015 9.3852 2.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727665917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:05 Heat of formation + Delta-G solvation = -36.210173 kcal Electronic energy + Delta-G solvation = -28912.710909 eV Core-core repulsion = 24567.939227 eV Total energy + Delta-G solvation = -4344.771681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.50472 -41.50832 -41.11997 -39.81905 -38.06479 -37.63017 -36.03575 -34.31833 -33.87848 -32.03815 -31.06927 -30.59943 -29.47672 -27.58704 -27.27361 -25.14709 -23.46599 -22.90989 -22.56552 -21.55989 -21.04753 -19.85424 -19.21101 -18.86237 -18.44395 -17.90343 -17.77961 -17.57195 -16.82656 -16.44804 -16.32366 -16.02210 -15.93494 -15.67280 -15.34294 -15.17003 -14.78999 -14.54139 -14.35187 -14.28196 -14.26275 -13.92858 -13.53963 -13.38514 -13.04107 -12.99875 -12.68555 -12.51239 -12.37895 -12.14354 -12.10693 -11.86584 -11.78491 -11.55346 -11.40554 -10.80785 -10.64919 -9.92899 -9.84929 -9.30177 -9.03864 -8.43017 -6.13734 0.00848 0.68232 0.72180 1.05393 1.07709 1.34766 1.47377 1.52141 1.56660 1.70252 2.17309 2.23551 2.26724 2.88122 3.21118 3.42423 3.58767 3.68682 3.78684 4.01610 4.04358 4.16526 4.26906 4.28095 4.28875 4.38470 4.50547 4.54091 4.68122 4.69767 4.83257 4.94496 5.05139 5.11720 5.18328 5.25367 5.46742 5.57851 5.67946 5.74600 5.95876 6.00414 6.12844 6.18579 6.63302 6.81988 6.95837 7.26157 7.78723 8.76785 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.002529 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.037901 B =11066.845759 C =12675.594842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.443 3.557 4 O -0.526 6.526 5 C 0.149 3.851 6 N -0.368 5.368 7 C 0.094 3.906 8 C -0.305 4.305 9 C 0.290 3.710 10 N -0.630 5.630 11 C 0.557 3.443 12 O -0.527 6.527 13 C -0.243 4.243 14 C -0.032 4.032 15 C -0.200 4.200 16 C -0.034 4.034 17 C -0.254 4.254 18 C 0.156 3.844 19 O -0.184 6.184 20 C -0.429 4.429 21 H 0.108 0.892 22 C -0.020 4.020 23 N -0.901 5.901 24 Si 1.021 2.979 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.254 1.254 28 N -0.327 5.327 29 H 0.056 0.944 30 H 0.139 0.861 31 H 0.057 0.943 32 H 0.157 0.843 33 H 0.192 0.808 34 H 0.231 0.769 35 H 0.140 0.860 36 H 0.421 0.579 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.128 0.872 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.573 -16.816 -7.684 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.285 3.715 4 O -0.414 6.414 5 C 0.028 3.972 6 N -0.154 5.154 7 C -0.050 4.050 8 C -0.336 4.336 9 C 0.034 3.966 10 N -0.281 5.281 11 C 0.348 3.652 12 O -0.402 6.402 13 C -0.248 4.248 14 C -0.050 4.050 15 C -0.218 4.218 16 C -0.053 4.053 17 C -0.274 4.274 18 C 0.100 3.900 19 O -0.086 6.086 20 C -0.504 4.504 21 H 0.126 0.874 22 C -0.219 4.219 23 N -0.536 5.536 24 Si 0.839 3.161 25 H -0.179 1.179 26 H -0.198 1.198 27 H -0.178 1.178 28 N -0.157 5.157 29 H 0.074 0.926 30 H 0.157 0.843 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.209 0.791 34 H 0.247 0.753 35 H 0.157 0.843 36 H 0.260 0.740 37 H 0.171 0.829 38 H 0.182 0.818 39 H 0.175 0.825 40 H 0.146 0.854 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.922 -17.510 -7.418 21.930 hybrid contribution 0.492 1.334 0.751 1.608 sum -10.430 -16.176 -6.667 20.369 Atomic orbital electron populations 1.23533 0.74693 1.05850 1.02148 1.86462 1.24900 1.31693 1.83871 1.24296 0.93057 0.81698 0.72409 1.90789 1.67595 1.37824 1.45178 1.21547 0.86963 0.77120 1.11619 1.47845 1.37745 1.08363 1.21427 1.23100 0.93953 0.92244 0.95716 1.21940 1.11047 0.98462 1.02108 1.19423 0.96385 0.86902 0.93877 1.42492 1.49549 1.05088 1.31011 1.18600 0.78882 0.83678 0.84035 1.90869 1.38422 1.84524 1.26340 1.18967 1.11734 0.90603 1.03478 1.21292 0.93291 0.99725 0.90718 1.21164 1.05250 0.91871 1.03498 1.21473 0.91325 0.99963 0.92492 1.21317 1.07792 0.97088 1.01161 1.19964 0.89683 0.93931 0.86423 1.84163 1.49872 1.38412 1.36139 1.22008 1.20806 0.90073 1.17545 0.87443 1.26731 0.97721 1.02387 0.95101 1.70295 1.34652 1.29006 1.19657 0.84639 0.77594 0.75289 0.78555 1.17903 1.19805 1.17841 1.77294 1.25788 0.96144 1.16483 0.92560 0.84347 0.92439 0.82583 0.79129 0.75309 0.84266 0.74017 0.82887 0.81820 0.82501 0.85397 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.35 -5.28 10.56 -51.30 -0.54 -5.82 16 3 C 0.44 8.81 7.99 71.24 0.57 9.38 16 4 O -0.53 -16.15 15.45 21.97 0.34 -15.81 16 5 C 0.15 1.96 7.10 85.64 0.61 2.57 16 6 N -0.37 -9.43 3.40 -351.84 -1.20 -10.63 16 7 C 0.09 2.52 11.43 83.52 0.95 3.47 16 8 C -0.31 -12.09 9.60 22.11 0.21 -11.87 16 9 C 0.29 11.50 8.11 133.35 1.08 12.58 16 10 N -0.63 -24.58 5.40 -310.41 -1.68 -26.26 16 11 C 0.56 26.73 7.73 86.69 0.67 27.40 16 12 O -0.53 -30.95 12.29 16.85 0.21 -30.74 16 13 C -0.24 -10.85 5.89 -19.99 -0.12 -10.97 16 14 C -0.03 -1.02 9.53 22.52 0.21 -0.81 16 15 C -0.20 -5.51 10.03 22.25 0.22 -5.28 16 16 C -0.03 -1.07 10.03 22.30 0.22 -0.85 16 17 C -0.25 -10.76 9.16 22.36 0.20 -10.56 16 18 C 0.16 8.02 6.66 22.91 0.15 8.17 16 19 O -0.18 -11.56 7.84 0.85 0.01 -11.55 16 20 C -0.43 -25.58 9.49 67.93 0.64 -24.93 16 21 H 0.11 5.72 5.21 -2.91 -0.02 5.70 16 22 C -0.02 -1.14 5.49 84.85 0.47 -0.68 16 23 N -0.90 -57.94 13.67 21.62 0.30 -57.64 16 24 Si 1.02 43.63 29.55 68.60 2.03 45.66 16 25 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 28 N -0.33 -11.32 11.66 -54.48 -0.64 -11.96 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.14 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 32 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.19 0.51 8.07 -2.39 -0.02 0.49 16 34 H 0.23 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.14 6.74 5.91 -2.91 -0.02 6.73 16 36 H 0.42 13.10 6.85 -92.71 -0.64 12.47 16 37 H 0.15 3.63 6.40 -2.91 -0.02 3.61 16 38 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.13 5.42 5.64 -2.91 -0.02 5.40 16 41 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -98.81 363.05 6.61 -92.20 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.48 Total: 33.35 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 7.30 Total: -0.81 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -3.21 Total: -106.48 kcal Atomic # 8 Polarization: -63.93 SS G_CDS: 0.01 Total: -63.91 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -98.81 6.61 -92.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727665917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.992 kcal (2) G-P(sol) polarization free energy of solvation -98.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds