Wall clock time and date at job start Wed Apr 1 2020 03:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35845 * 119.25128 * 2 1 4 4 C 1.38133 * 119.31831 * 180.23197 * 3 2 1 5 5 C 1.47050 * 120.95792 * 179.75150 * 4 3 2 6 6 O 1.21656 * 119.99496 * 7.60358 * 5 4 3 7 7 N 1.34768 * 120.00103 * 187.60425 * 5 4 3 8 8 C 1.39865 * 120.00277 * 171.81852 * 7 5 4 9 9 C 1.38972 * 120.03146 * 24.55894 * 8 7 5 10 10 C 1.38153 * 120.06494 * 180.02562 * 9 8 7 11 11 C 1.38182 * 120.13737 * 359.68268 * 10 9 8 12 12 C 1.38913 * 120.06910 * 0.59548 * 11 10 9 13 13 O 1.35749 * 120.02810 * 179.70065 * 12 11 10 14 14 C 1.34834 * 116.99919 * 171.58994 * 13 12 11 15 15 H 1.07994 * 119.99856 * 5.33887 * 14 13 12 16 16 C 1.38650 * 119.99709 * 185.33955 * 14 13 12 17 17 N 1.31559 * 119.99623 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00428 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.46943 * 90.00100 * 18 16 14 20 20 H 1.48498 * 109.47463 * 209.99850 * 18 16 14 21 21 H 1.48498 * 109.46985 * 330.00227 * 18 16 14 22 22 C 1.38723 * 120.03633 * 204.54261 * 8 7 5 23 23 C 1.47186 * 118.08646 * 359.48087 * 4 3 2 24 24 O 1.21677 * 120.73530 * 180.24969 * 23 4 3 25 25 N 1.34966 * 118.52613 * 0.27053 * 23 4 3 26 26 C 1.46501 * 119.78127 * 179.97438 * 25 23 4 27 27 C 1.34236 * 119.24849 * 179.70035 * 2 1 3 28 28 O 1.21544 * 118.93640 * 0.04791 * 27 2 1 29 29 H 1.09003 * 109.47417 * 270.29381 * 1 2 3 30 30 H 1.09001 * 109.47503 * 30.30034 * 1 2 3 31 31 H 1.09003 * 109.47032 * 150.29903 * 1 2 3 32 32 H 1.07996 * 120.34101 * 359.97438 * 3 2 1 33 33 H 0.97004 * 119.99982 * 351.82402 * 7 5 4 34 34 H 1.08004 * 119.97284 * 359.97438 * 9 8 7 35 35 H 1.07995 * 119.93694 * 180.02562 * 10 9 8 36 36 H 1.07995 * 119.96203 * 180.32088 * 11 10 9 37 37 H 0.97002 * 120.00146 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.07390 * 0.03978 * 22 8 7 39 39 H 1.08993 * 109.47067 * 0.02562 * 26 25 23 40 40 H 1.09004 * 109.47304 * 120.00517 * 26 25 23 41 41 H 1.09000 * 109.47432 * 239.99911 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1287 1.1852 0.0000 4 6 3.5101 1.1869 -0.0049 5 6 4.2650 2.4488 -0.0105 6 8 3.6815 3.5072 0.1285 7 7 5.6032 2.4327 -0.1696 8 6 6.3008 3.6320 -0.3466 9 6 5.7676 4.8237 0.1297 10 6 6.4559 6.0087 -0.0452 11 6 7.6791 6.0122 -0.6880 12 6 8.2147 4.8251 -1.1715 13 8 9.4135 4.8304 -1.8083 14 6 9.9584 3.6314 -2.0974 15 1 9.4044 2.7253 -1.9016 16 6 11.2298 3.5620 -2.6462 17 7 11.7611 2.3921 -2.9288 18 14 12.1876 5.1293 -2.9855 19 1 12.9931 5.4859 -1.7899 20 1 13.0905 4.9165 -4.1451 21 1 11.2407 6.2317 -3.2912 22 6 7.5259 3.6331 -0.9974 23 6 4.2046 -0.1108 0.0019 24 8 5.4201 -0.1656 0.0025 25 7 3.4632 -1.2386 0.0069 26 6 4.1260 -2.5451 0.0131 27 6 2.1208 -1.1712 0.0061 28 8 1.4801 -2.2040 0.0106 29 1 -0.3634 0.0053 1.0277 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3633 -0.8927 -0.5092 32 1 1.5821 2.1166 -0.0004 33 1 6.0825 1.5894 -0.1615 34 1 4.8138 4.8236 0.6363 35 1 6.0398 6.9335 0.3261 36 1 8.2171 6.9394 -0.8186 37 1 12.6508 2.3434 -3.3123 38 1 7.9423 2.7084 -1.3688 39 1 5.2068 -2.4042 0.0132 40 1 3.8319 -3.0976 0.9055 41 1 3.8324 -3.1058 -0.8744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735003680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:40 Heat of formation + Delta-G solvation = -43.037599 kcal Electronic energy + Delta-G solvation = -29408.439836 eV Core-core repulsion = 25063.372095 eV Total energy + Delta-G solvation = -4345.067741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.81383 -40.37775 -39.43748 -38.73561 -37.76972 -36.45482 -35.84326 -34.14376 -32.42294 -32.22509 -29.44682 -29.00278 -28.57197 -27.48116 -25.30255 -24.84192 -24.01263 -22.30585 -21.70863 -20.57934 -19.65761 -18.65126 -17.91600 -17.73444 -17.68110 -17.39081 -16.31558 -16.14692 -15.66182 -15.44069 -15.42865 -15.15958 -14.83885 -14.57109 -14.31286 -14.02250 -13.88773 -13.73158 -13.50065 -13.36009 -13.16862 -12.97851 -12.76775 -12.26127 -12.14049 -11.97752 -11.66201 -11.46936 -11.39244 -10.86413 -10.84610 -10.62396 -10.28940 -10.23459 -9.90769 -9.44999 -9.39107 -9.14883 -8.78858 -7.67277 -7.20541 -6.35653 -4.02876 0.19849 1.27011 1.30485 1.99170 2.30923 2.36697 2.63081 3.16832 3.26012 3.30083 3.35171 3.45029 3.67066 4.12891 4.28927 4.34291 4.51716 4.60515 4.61580 4.84023 4.91514 4.94832 4.96760 4.96981 5.00703 5.16692 5.32866 5.42192 5.63052 5.72995 6.02220 6.11928 6.26072 6.27975 6.55969 6.57881 6.88429 6.96736 7.01238 7.25827 7.31255 7.32281 7.67043 7.85049 7.87844 8.09259 8.30638 8.99874 9.62569 10.72232 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002676 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.691869 B =10461.306496 C =12005.943947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.528 5.528 3 C 0.247 3.753 4 C -0.314 4.314 5 C 0.589 3.411 6 O -0.530 6.530 7 N -0.649 5.649 8 C 0.179 3.821 9 C -0.216 4.216 10 C -0.067 4.067 11 C -0.203 4.203 12 C 0.175 3.825 13 O -0.218 6.218 14 C -0.388 4.388 15 H 0.105 0.895 16 C 0.063 3.937 17 N -0.882 5.882 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.246 4.246 23 C 0.559 3.441 24 O -0.494 6.494 25 N -0.551 5.551 26 C 0.077 3.923 27 C 0.693 3.307 28 O -0.530 6.530 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.199 0.801 33 H 0.421 0.579 34 H 0.147 0.853 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.278 0.722 38 H 0.136 0.864 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.769 -6.178 6.957 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.244 5.244 3 C 0.119 3.881 4 C -0.327 4.327 5 C 0.377 3.623 6 O -0.410 6.410 7 N -0.298 5.298 8 C 0.085 3.915 9 C -0.236 4.236 10 C -0.085 4.085 11 C -0.223 4.223 12 C 0.122 3.878 13 O -0.123 6.123 14 C -0.464 4.464 15 H 0.122 0.878 16 C -0.140 4.140 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.267 4.267 23 C 0.353 3.647 24 O -0.367 6.367 25 N -0.294 5.294 26 C -0.063 4.063 27 C 0.396 3.604 28 O -0.402 6.402 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.216 0.784 33 H 0.266 0.734 34 H 0.165 0.835 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.597 -6.260 6.857 25.358 hybrid contribution 0.800 -0.120 -0.260 0.850 sum -22.797 -6.380 6.597 24.575 Atomic orbital electron populations 1.22297 0.73661 1.06041 1.04834 1.44531 1.10264 1.04265 1.65382 1.22919 0.92355 0.90135 0.82739 1.21543 0.92830 0.93552 1.24774 1.16949 0.81998 0.86574 0.76766 1.90698 1.69636 1.30310 1.50324 1.43768 1.06781 1.10597 1.68694 1.17565 0.91930 0.85164 0.96841 1.21333 1.03479 0.91004 1.07804 1.20606 0.93409 0.97243 0.97278 1.20279 0.98402 0.96482 1.07140 1.18764 0.86022 0.92664 0.90307 1.83590 1.29448 1.33123 1.66123 1.20750 1.00450 0.82750 1.42457 0.87750 1.24455 0.95667 0.98040 0.95851 1.69654 1.16943 1.23425 1.41979 0.86183 0.79663 0.82959 0.78097 1.19916 1.20897 1.18331 1.20884 0.96979 0.99959 1.08922 1.18444 0.87427 0.83364 0.75435 1.90709 1.12456 1.85651 1.47864 1.46184 1.05626 1.10823 1.66810 1.22033 0.99865 0.80354 1.04091 1.15732 0.81895 0.84048 0.78735 1.91026 1.64923 1.31086 1.53200 0.89842 0.88429 0.88101 0.78446 0.73420 0.83541 0.86510 0.86529 0.91154 0.84678 0.87397 0.90035 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 10.31 59.84 0.62 0.81 16 2 N -0.53 -3.42 2.97 -128.51 -0.38 -3.80 16 3 C 0.25 1.74 9.96 -15.81 -0.16 1.59 16 4 C -0.31 -3.54 6.05 -102.73 -0.62 -4.16 16 5 C 0.59 8.86 7.64 -12.69 -0.10 8.77 16 6 O -0.53 -8.51 13.22 5.23 0.07 -8.44 16 7 N -0.65 -11.33 5.31 -10.96 -0.06 -11.39 16 8 C 0.18 3.60 6.47 -83.74 -0.54 3.06 16 9 C -0.22 -4.10 8.86 -39.34 -0.35 -4.45 16 10 C -0.07 -1.21 10.03 -39.63 -0.40 -1.61 16 11 C -0.20 -4.18 9.99 -39.35 -0.39 -4.57 16 12 C 0.17 4.17 6.64 -39.14 -0.26 3.92 16 13 O -0.22 -5.86 8.58 0.04 0.00 -5.86 16 14 C -0.39 -11.16 9.94 30.88 0.31 -10.86 16 15 H 0.11 3.08 5.46 -52.49 -0.29 2.79 16 16 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 17 N -0.88 -25.89 13.96 55.48 0.77 -25.11 16 18 Si 0.91 22.02 28.62 -169.99 -4.86 17.16 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.25 -5.58 9.05 -39.21 -0.35 -5.94 16 23 C 0.56 6.82 7.63 -12.54 -0.10 6.72 16 24 O -0.49 -7.34 13.40 5.21 0.07 -7.27 16 25 N -0.55 -5.62 2.96 -129.64 -0.38 -6.00 16 26 C 0.08 0.64 9.96 59.85 0.60 1.24 16 27 C 0.69 6.50 8.09 -87.73 -0.71 5.79 16 28 O -0.53 -5.82 15.61 5.33 0.08 -5.74 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 -0.01 8.01 -51.93 -0.42 -0.42 16 31 H 0.10 0.34 7.31 -51.93 -0.38 -0.04 16 32 H 0.20 0.82 7.70 -52.49 -0.40 0.42 16 33 H 0.42 7.31 5.57 -40.82 -0.23 7.09 16 34 H 0.15 2.67 5.31 -52.49 -0.28 2.39 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.14 3.22 5.67 -52.49 -0.30 2.92 16 39 H 0.11 0.94 6.92 -51.93 -0.36 0.58 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -35.54 352.88 -5.83 -41.37 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.90 Total: 7.78 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.55 Total: 1.99 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.05 Total: -46.30 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: 0.22 Total: -27.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.54 -5.83 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735003680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.667 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds