Wall clock time and date at job start Wed Apr 1 2020 03:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35845 * 119.25128 * 2 1 4 4 C 1.38133 * 119.31831 * 180.23197 * 3 2 1 5 5 C 1.47050 * 120.95792 * 179.75150 * 4 3 2 6 6 O 1.21656 * 119.99496 * 7.60358 * 5 4 3 7 7 N 1.34768 * 120.00103 * 187.60425 * 5 4 3 8 8 C 1.39865 * 120.00277 * 171.81852 * 7 5 4 9 9 C 1.38972 * 120.03146 * 24.55894 * 8 7 5 10 10 C 1.38153 * 120.06494 * 180.02562 * 9 8 7 11 11 C 1.38182 * 120.13737 * 359.68268 * 10 9 8 12 12 C 1.38913 * 120.06910 * 0.59548 * 11 10 9 13 13 O 1.35749 * 120.02810 * 179.70065 * 12 11 10 14 14 C 1.34834 * 116.99919 * 171.58994 * 13 12 11 15 15 H 1.07994 * 119.99856 * 5.33887 * 14 13 12 16 16 C 1.38650 * 119.99709 * 185.33955 * 14 13 12 17 17 N 1.31559 * 119.99623 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00428 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.46943 * 90.00100 * 18 16 14 20 20 H 1.48498 * 109.47463 * 209.99850 * 18 16 14 21 21 H 1.48498 * 109.46985 * 330.00227 * 18 16 14 22 22 C 1.38723 * 120.03633 * 204.54261 * 8 7 5 23 23 C 1.47186 * 118.08646 * 359.48087 * 4 3 2 24 24 O 1.21677 * 120.73530 * 180.24969 * 23 4 3 25 25 N 1.34966 * 118.52613 * 0.27053 * 23 4 3 26 26 C 1.46501 * 119.78127 * 179.97438 * 25 23 4 27 27 C 1.34236 * 119.24849 * 179.70035 * 2 1 3 28 28 O 1.21544 * 118.93640 * 0.04791 * 27 2 1 29 29 H 1.09003 * 109.47417 * 270.29381 * 1 2 3 30 30 H 1.09001 * 109.47503 * 30.30034 * 1 2 3 31 31 H 1.09003 * 109.47032 * 150.29903 * 1 2 3 32 32 H 1.07996 * 120.34101 * 359.97438 * 3 2 1 33 33 H 0.97004 * 119.99982 * 351.82402 * 7 5 4 34 34 H 1.08004 * 119.97284 * 359.97438 * 9 8 7 35 35 H 1.07995 * 119.93694 * 180.02562 * 10 9 8 36 36 H 1.07995 * 119.96203 * 180.32088 * 11 10 9 37 37 H 0.97002 * 120.00146 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.07390 * 0.03978 * 22 8 7 39 39 H 1.08993 * 109.47067 * 0.02562 * 26 25 23 40 40 H 1.09004 * 109.47304 * 120.00517 * 26 25 23 41 41 H 1.09000 * 109.47432 * 239.99911 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1287 1.1852 0.0000 4 6 3.5101 1.1869 -0.0049 5 6 4.2650 2.4488 -0.0105 6 8 3.6815 3.5072 0.1285 7 7 5.6032 2.4327 -0.1696 8 6 6.3008 3.6320 -0.3466 9 6 5.7676 4.8237 0.1297 10 6 6.4559 6.0087 -0.0452 11 6 7.6791 6.0122 -0.6880 12 6 8.2147 4.8251 -1.1715 13 8 9.4135 4.8304 -1.8083 14 6 9.9584 3.6314 -2.0974 15 1 9.4044 2.7253 -1.9016 16 6 11.2298 3.5620 -2.6462 17 7 11.7611 2.3921 -2.9288 18 14 12.1876 5.1293 -2.9855 19 1 12.9931 5.4859 -1.7899 20 1 13.0905 4.9165 -4.1451 21 1 11.2407 6.2317 -3.2912 22 6 7.5259 3.6331 -0.9974 23 6 4.2046 -0.1108 0.0019 24 8 5.4201 -0.1656 0.0025 25 7 3.4632 -1.2386 0.0069 26 6 4.1260 -2.5451 0.0131 27 6 2.1208 -1.1712 0.0061 28 8 1.4801 -2.2040 0.0106 29 1 -0.3634 0.0053 1.0277 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3633 -0.8927 -0.5092 32 1 1.5821 2.1166 -0.0004 33 1 6.0825 1.5894 -0.1615 34 1 4.8138 4.8236 0.6363 35 1 6.0398 6.9335 0.3261 36 1 8.2171 6.9394 -0.8186 37 1 12.6508 2.3434 -3.3123 38 1 7.9423 2.7084 -1.3688 39 1 5.2068 -2.4042 0.0132 40 1 3.8319 -3.0976 0.9055 41 1 3.8324 -3.1058 -0.8744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735003680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:39 Heat of formation + Delta-G solvation = -67.966488 kcal Electronic energy + Delta-G solvation = -29409.520834 eV Core-core repulsion = 25063.372095 eV Total energy + Delta-G solvation = -4346.148739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.59734 -41.65638 -40.60562 -40.17018 -38.64866 -38.01145 -36.72647 -35.54348 -34.40065 -33.15055 -31.02958 -30.36136 -29.48635 -28.06479 -27.22558 -25.87709 -24.78803 -23.59137 -23.38025 -21.87166 -20.56945 -20.12072 -19.30789 -19.03644 -18.63038 -18.48575 -17.40342 -17.19624 -16.86979 -16.74130 -16.35174 -16.26121 -16.07209 -15.96231 -15.64976 -15.47316 -15.33169 -14.95845 -14.79843 -14.56388 -14.19835 -13.97814 -13.95637 -13.50899 -13.35451 -13.32111 -12.95931 -12.69954 -12.50532 -12.46281 -12.25876 -12.06875 -11.70083 -11.51144 -11.32747 -11.11197 -10.87279 -10.73270 -9.93679 -9.34549 -8.85682 -8.48949 -6.22612 -0.55435 0.36026 0.54715 0.60640 0.70246 1.32533 1.37534 1.51208 1.54312 1.63002 2.04843 2.29808 2.30174 2.80243 2.89634 3.06438 3.19036 3.47761 3.61885 3.95404 4.06469 4.15987 4.19600 4.30924 4.32357 4.37708 4.48295 4.50624 4.66386 4.66995 4.73496 4.82363 4.84409 4.96382 5.00813 5.36680 5.41167 5.52039 5.69239 5.77431 5.81359 5.93123 6.08173 6.27501 6.43735 6.55901 6.84947 7.01287 7.58181 8.62954 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002676 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.691869 B =10461.306496 C =12005.943947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.515 5.515 3 C 0.305 3.695 4 C -0.356 4.356 5 C 0.593 3.407 6 O -0.540 6.540 7 N -0.662 5.662 8 C 0.179 3.821 9 C -0.206 4.206 10 C -0.049 4.049 11 C -0.204 4.204 12 C 0.141 3.859 13 O -0.240 6.240 14 C -0.400 4.400 15 H 0.075 0.925 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.974 3.026 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.266 4.266 23 C 0.556 3.444 24 O -0.536 6.536 25 N -0.553 5.553 26 C 0.073 3.927 27 C 0.689 3.311 28 O -0.543 6.543 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.241 0.759 33 H 0.418 0.582 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.285 0.715 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.476 -4.038 7.939 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.229 5.229 3 C 0.173 3.827 4 C -0.369 4.369 5 C 0.384 3.616 6 O -0.421 6.421 7 N -0.311 5.311 8 C 0.084 3.916 9 C -0.227 4.227 10 C -0.068 4.068 11 C -0.224 4.224 12 C 0.092 3.908 13 O -0.147 6.147 14 C -0.476 4.476 15 H 0.093 0.907 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.796 3.204 19 H -0.189 1.189 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.288 4.288 23 C 0.352 3.648 24 O -0.412 6.412 25 N -0.295 5.295 26 C -0.067 4.067 27 C 0.392 3.608 28 O -0.417 6.417 29 H 0.120 0.880 30 H 0.154 0.846 31 H 0.113 0.887 32 H 0.257 0.743 33 H 0.262 0.738 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.154 0.846 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.412 -4.163 7.862 28.820 hybrid contribution 1.482 -0.906 -0.417 1.786 sum -25.930 -5.068 7.445 27.450 Atomic orbital electron populations 1.22760 0.70609 1.07683 1.06647 1.44871 1.11854 1.03197 1.62946 1.23403 0.90815 0.91347 0.77166 1.21034 0.94157 0.91325 1.30354 1.17301 0.80973 0.87870 0.75444 1.90647 1.69416 1.31043 1.50977 1.43936 1.08009 1.09584 1.69578 1.17715 0.91133 0.86951 0.95810 1.21718 1.03830 0.90631 1.06480 1.21130 0.91832 0.98808 0.94985 1.20613 0.99331 0.95791 1.06665 1.19334 0.85566 0.94427 0.91521 1.83529 1.31128 1.31661 1.68375 1.20668 1.00931 0.82918 1.43085 0.90731 1.25324 0.96462 1.01520 0.95616 1.69746 1.17775 1.25493 1.43584 0.85169 0.78159 0.78450 0.78624 1.18940 1.19228 1.18431 1.20813 0.98594 0.98841 1.10513 1.18653 0.87073 0.84212 0.74852 1.90685 1.14166 1.86126 1.50247 1.46262 1.06191 1.10824 1.66245 1.22137 0.99367 0.80006 1.05203 1.15915 0.81440 0.84849 0.78560 1.91027 1.65008 1.31879 1.53766 0.87987 0.84618 0.88730 0.74279 0.73777 0.81814 0.81666 0.84639 0.90582 0.87545 0.88421 0.88704 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 10.31 127.77 1.32 1.35 16 2 N -0.51 -4.79 2.97 -679.08 -2.02 -6.81 16 3 C 0.30 3.11 9.96 84.05 0.84 3.95 16 4 C -0.36 -7.54 6.05 -18.64 -0.11 -7.65 16 5 C 0.59 17.29 7.64 86.56 0.66 17.95 16 6 O -0.54 -15.90 13.22 -4.21 -0.06 -15.96 16 7 N -0.66 -23.82 5.31 -306.82 -1.63 -25.45 16 8 C 0.18 7.32 6.47 38.15 0.25 7.57 16 9 C -0.21 -7.41 8.86 22.43 0.20 -7.21 16 10 C -0.05 -1.63 10.03 22.24 0.22 -1.41 16 11 C -0.20 -8.14 9.99 22.42 0.22 -7.91 16 12 C 0.14 6.97 6.64 22.56 0.15 7.12 16 13 O -0.24 -13.45 8.58 -22.77 -0.20 -13.65 16 14 C -0.40 -24.48 9.94 67.92 0.68 -23.80 16 15 H 0.08 4.86 5.46 -2.91 -0.02 4.84 16 16 C 0.01 0.53 5.49 84.83 0.47 0.99 16 17 N -0.93 -56.90 13.96 21.61 0.30 -56.60 16 18 Si 0.97 46.47 28.62 68.60 1.96 48.43 16 19 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 22 C -0.27 -12.82 9.05 22.51 0.20 -12.62 16 23 C 0.56 13.81 7.63 86.56 0.66 14.47 16 24 O -0.54 -17.18 13.40 -4.27 -0.06 -17.24 16 25 N -0.55 -11.08 2.96 -800.68 -2.37 -13.45 16 26 C 0.07 1.25 9.96 127.77 1.27 2.52 16 27 C 0.69 11.58 8.09 179.34 1.45 13.03 16 28 O -0.54 -10.92 15.61 -3.85 -0.06 -10.98 16 29 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.14 -0.87 8.01 -2.39 -0.02 -0.88 16 31 H 0.09 0.29 7.31 -2.39 -0.02 0.28 16 32 H 0.24 0.52 7.70 -2.91 -0.02 0.49 16 33 H 0.42 15.66 5.57 -92.71 -0.52 15.15 16 34 H 0.16 5.42 5.31 -3.07 -0.02 5.40 16 35 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 36 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.11 5.67 5.67 -2.91 -0.02 5.66 16 39 H 0.10 1.88 6.92 -2.39 -0.02 1.86 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -83.32 352.88 4.96 -78.36 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.60 Total: 24.99 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 8.48 Total: 8.35 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -5.72 Total: -102.30 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -0.37 Total: -57.82 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.96 Total: 48.43 kcal Total: -83.32 4.96 -78.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735003680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.397 kcal (2) G-P(sol) polarization free energy of solvation -83.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds