Wall clock time and date at job start Wed Apr 1 2020 02:55:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 N 1.46503 * 109.46966 * 2 1
4 4 N 1.27990 * 118.33096 * 89.99924 * 3 2 1
5 5 C 1.31487 * 124.23612 * 180.02562 * 4 3 2
6 6 C 1.47323 * 120.34197 * 179.97438 * 5 4 3
7 7 O 1.21644 * 120.00318 * 174.68810 * 6 5 4
8 8 N 1.34776 * 120.00313 * 354.68514 * 6 5 4
9 9 C 1.36857 * 119.99957 * 4.54285 * 8 6 5
10 10 H 1.08009 * 120.00030 * 312.04109 * 9 8 6
11 11 C 1.39043 * 120.00614 * 132.04019 * 9 8 6
12 12 N 1.31371 * 119.99752 * 3.50339 * 11 9 8
13 13 Si 1.86799 * 120.00630 * 183.50827 * 11 9 8
14 14 H 1.48498 * 109.47063 * 89.99730 * 13 11 9
15 15 H 1.48491 * 109.47241 * 210.00044 * 13 11 9
16 16 H 1.48502 * 109.46784 * 329.99933 * 13 11 9
17 17 C 1.46500 * 120.00480 * 184.54184 * 8 6 5
18 18 C 1.50703 * 109.47002 * 84.62372 * 17 8 6
19 19 O 1.20821 * 119.99843 * 0.02562 * 18 17 8
20 20 O 1.34233 * 119.99860 * 180.02562 * 18 17 8
21 21 C 1.47537 * 119.31397 * 359.97438 * 5 4 3
22 22 O 1.21860 * 121.91999 * 179.97438 * 21 5 4
23 23 C 1.47451 * 116.16212 * 0.02562 * 21 5 4
24 24 C 1.39227 * 122.15740 * 180.02562 * 23 21 5
25 25 C 1.36798 * 119.51569 * 179.97438 * 24 23 21
26 26 C 1.38845 * 120.49955 * 0.02562 * 25 24 23
27 27 C 1.37752 * 120.86289 * 359.97262 * 26 25 24
28 28 C 1.37321 * 118.32301 * 269.99653 * 3 2 1
29 29 H 1.09000 * 109.47217 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.47727 * 300.00163 * 1 2 3
31 31 H 1.09000 * 109.47075 * 60.00248 * 1 2 3
32 32 H 1.08993 * 109.47370 * 239.99751 * 2 1 3
33 33 H 1.09000 * 109.47075 * 119.99751 * 2 1 3
34 34 H 0.96998 * 120.00287 * 179.97438 * 12 11 9
35 35 H 1.09000 * 109.47297 * 204.62486 * 17 8 6
36 36 H 1.09005 * 109.46618 * 324.62840 * 17 8 6
37 37 H 0.96696 * 116.99688 * 180.02562 * 20 18 17
38 38 H 1.07994 * 120.24204 * 359.96984 * 24 23 21
39 39 H 1.08005 * 119.74929 * 179.97438 * 25 24 23
40 40 H 1.07999 * 119.56970 * 179.97438 * 26 25 24
41 41 H 1.07996 * 120.16354 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 7 2.2207 1.9539 1.1266
5 6 2.6561 3.1872 1.2619
6 6 2.8588 3.7620 2.6031
7 8 3.3525 4.8673 2.7230
8 7 2.4971 3.0633 3.6974
9 6 2.0283 1.7840 3.5685
10 1 1.2655 1.5595 2.8375
11 6 2.5338 0.7732 4.3784
12 7 3.4111 1.0581 5.3139
13 14 1.9658 -0.9898 4.1364
14 1 2.8563 -1.6671 3.1601
15 1 2.0167 -1.7088 5.4346
16 1 0.5727 -0.9947 3.6221
17 6 2.6058 3.6732 5.0250
18 6 1.3706 4.4896 5.3054
19 8 0.4896 4.5549 4.4811
20 8 1.2490 5.1443 6.4710
21 6 2.9397 3.9894 0.0566
22 8 3.3444 5.1367 0.1267
23 6 2.7043 3.3235 -1.2378
24 6 2.9314 3.9642 -2.4529
25 6 2.6952 3.2948 -3.6222
26 6 2.2319 1.9860 -3.6038
27 6 2.0012 1.3348 -2.4121
28 6 2.2354 1.9955 -1.2088
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3635 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8899
33 1 1.8932 -0.5138 0.8900
34 1 3.7635 0.3530 5.8792
35 1 2.7027 2.8906 5.7776
36 1 3.4833 4.3190 5.0573
37 1 0.4387 5.6544 6.6055
38 1 3.2912 4.9823 -2.4721
39 1 2.8697 3.7883 -4.5670
40 1 2.0501 1.4718 -4.5360
41 1 1.6412 0.3166 -2.4109
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000737310165.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:16
Heat of formation + Delta-G solvation = -54.556439 kcal
Electronic energy + Delta-G solvation = -31230.357849 eV
Core-core repulsion = 26884.790614 eV
Total energy + Delta-G solvation = -4345.567235 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.35610 -39.55119 -38.43948 -38.14168 -37.30974 -35.32527 -34.72207 -34.10726
-31.65194 -31.30021 -30.94224 -29.76542 -27.80960 -25.35731 -24.52103 -24.10117
-23.76121 -21.44996 -21.03320 -19.84542 -18.94456 -18.58007 -17.33395 -17.31555
-16.62887 -16.00481 -15.73785 -15.37555 -15.30475 -14.85589 -14.79157 -14.67840
-14.37728 -14.25451 -13.99295 -13.72934 -13.49381 -13.28548 -12.89062 -12.50264
-12.33272 -12.20969 -12.10941 -11.75584 -11.62408 -11.49352 -11.43517 -11.19377
-11.17833 -11.00928 -10.64665 -10.49425 -10.41792 -9.73480 -9.53434 -9.21528
-9.11582 -9.10040 -8.48469 -7.65376 -7.44646 -6.47945 -4.24487 0.78873
0.94278 1.90458 2.49422 2.94251 3.03996 3.08829 3.12520 3.14901
3.60108 3.83038 4.06456 4.10064 4.40343 4.50584 4.62552 4.75222
4.90011 5.00356 5.02847 5.06354 5.10683 5.20720 5.26430 5.57573
5.60248 5.66368 5.78708 5.85398 5.91469 6.09739 6.16980 6.21592
6.30504 6.40032 6.54671 6.63976 6.85132 6.88161 7.22976 7.46122
7.77773 8.06613 8.33591 8.63949 8.75015 8.95895 9.30414 9.74871
10.54850
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.011104 B = 0.005129 C = 0.003890
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2521.096311 B = 5458.327534 C = 7196.171946
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.112 3.888
3 N -0.346 5.346
4 N -0.111 5.111
5 C -0.036 4.036
6 C 0.555 3.445
7 O -0.567 6.567
8 N -0.414 5.414
9 C -0.298 4.298
10 H 0.108 0.892
11 C 0.042 3.958
12 N -0.873 5.873
13 Si 0.919 3.081
14 H -0.274 1.274
15 H -0.282 1.282
16 H -0.265 1.265
17 C 0.120 3.880
18 C 0.460 3.540
19 O -0.518 6.518
20 O -0.526 6.526
21 C 0.405 3.595
22 O -0.439 6.439
23 C -0.201 4.201
24 C -0.024 4.024
25 C -0.166 4.166
26 C -0.059 4.059
27 C -0.173 4.173
28 C 0.159 3.841
29 H 0.077 0.923
30 H 0.073 0.927
31 H 0.060 0.940
32 H 0.095 0.905
33 H 0.104 0.896
34 H 0.274 0.726
35 H 0.159 0.841
36 H 0.100 0.900
37 H 0.394 0.606
38 H 0.138 0.862
39 H 0.128 0.872
40 H 0.129 0.871
41 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.248 -5.992 -11.522 13.664
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.008 4.008
3 N -0.145 5.145
4 N 0.060 4.940
5 C -0.213 4.213
6 C 0.343 3.657
7 O -0.447 6.447
8 N -0.134 5.134
9 C -0.429 4.429
10 H 0.125 0.875
11 C -0.163 4.163
12 N -0.512 5.512
13 Si 0.745 3.255
14 H -0.200 1.200
15 H -0.208 1.208
16 H -0.189 1.189
17 C -0.005 4.005
18 C 0.302 3.698
19 O -0.406 6.406
20 O -0.337 6.337
21 C 0.282 3.718
22 O -0.311 6.311
23 C -0.206 4.206
24 C -0.043 4.043
25 C -0.185 4.185
26 C -0.078 4.078
27 C -0.195 4.195
28 C 0.054 3.946
29 H 0.096 0.904
30 H 0.092 0.908
31 H 0.079 0.921
32 H 0.113 0.887
33 H 0.122 0.878
34 H 0.085 0.915
35 H 0.175 0.825
36 H 0.118 0.882
37 H 0.251 0.749
38 H 0.156 0.844
39 H 0.146 0.854
40 H 0.147 0.853
41 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -3.807 -5.862 -11.028 13.056
hybrid contribution -0.708 -0.203 -0.518 0.901
sum -4.515 -6.065 -11.547 13.802
Atomic orbital electron populations
1.22220 0.94158 1.03201 1.03687 1.22015 0.95708 0.78073 1.05050
1.45389 1.55572 1.14042 0.99506 1.72021 1.04112 1.11971 1.05897
1.24605 1.09236 0.90526 0.96900 1.17277 0.80602 0.85371 0.82433
1.90740 1.47389 1.21046 1.85570 1.42900 1.55451 1.12784 1.02291
1.19876 1.20205 0.81564 1.21214 0.87458 1.25611 0.94821 1.00241
0.95650 1.69533 1.28632 1.34066 1.18920 0.86058 0.79320 0.81920
0.78223 1.19957 1.20756 1.18887 1.21248 0.90964 0.97675 0.90611
1.25144 0.90280 0.76490 0.77869 1.90622 1.42549 1.60456 1.46957
1.84613 1.46643 1.61840 1.40578 1.20213 0.76846 0.87680 0.87077
1.90707 1.35485 1.16749 1.88121 1.20357 1.09724 0.93988 0.96541
1.20766 0.93413 0.99764 0.90365 1.20833 1.04141 0.95402 0.98166
1.21105 0.94906 0.94424 0.97343 1.20824 1.07357 1.00885 0.90404
1.19001 0.95496 0.92358 0.87744 0.90431 0.90787 0.92056 0.88708
0.87766 0.91484 0.82456 0.88217 0.74949 0.84449 0.85405 0.85315
0.84599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.90 10.23 37.15 0.38 -1.52 16
2 C 0.11 1.37 5.96 -4.04 -0.02 1.35 16
3 N -0.35 -5.75 3.29 -58.63 -0.19 -5.94 16
4 N -0.11 -2.33 6.82 34.58 0.24 -2.10 16
5 C -0.04 -0.86 6.96 -80.53 -0.56 -1.42 16
6 C 0.56 14.97 7.42 -12.57 -0.09 14.88 16
7 O -0.57 -16.57 15.23 -14.59 -0.22 -16.79 16
8 N -0.41 -10.73 2.04 -117.35 -0.24 -10.97 16
9 C -0.30 -7.39 7.49 -15.01 -0.11 -7.50 16
10 H 0.11 2.62 6.00 -52.48 -0.31 2.30 16
11 C 0.04 1.00 5.35 -17.45 -0.09 0.90 16
12 N -0.87 -21.56 10.97 55.50 0.61 -20.95 16
13 Si 0.92 18.07 29.47 -169.99 -5.01 13.07 16
14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16
15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16
16 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16
17 C 0.12 2.89 5.48 -5.19 -0.03 2.86 16
18 C 0.46 10.47 8.36 36.01 0.30 10.77 16
19 O -0.52 -13.24 17.07 -18.75 -0.32 -13.56 16
20 O -0.53 -9.50 13.42 -39.27 -0.53 -10.02 16
21 C 0.40 9.14 7.18 -32.04 -0.23 8.91 16
22 O -0.44 -11.04 16.04 -14.78 -0.24 -11.28 16
23 C -0.20 -3.57 5.90 -104.78 -0.62 -4.19 16
24 C -0.02 -0.35 9.66 -39.74 -0.38 -0.74 16
25 C -0.17 -1.82 9.98 -39.88 -0.40 -2.22 16
26 C -0.06 -0.57 10.00 -39.53 -0.40 -0.97 16
27 C -0.17 -1.94 9.16 -39.38 -0.36 -2.30 16
28 C 0.16 2.46 6.57 -84.03 -0.55 1.91 16
29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
32 H 0.09 0.82 6.08 -51.93 -0.32 0.51 16
33 H 0.10 1.38 8.04 -51.93 -0.42 0.96 16
34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16
35 H 0.16 3.81 5.50 -51.93 -0.29 3.53 16
36 H 0.10 2.38 7.53 -51.93 -0.39 1.99 16
37 H 0.39 5.13 9.10 45.56 0.41 5.55 16
38 H 0.14 1.92 7.87 -52.49 -0.41 1.51 16
39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16
40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16
41 H 0.14 1.11 6.14 -52.49 -0.32 0.79 16
LS Contribution 356.49 15.07 5.37 5.37
Total: -1.00 -34.85 356.49 -6.99 -41.84
By element:
Atomic # 1 Polarization: 13.90 SS G_CDS: -3.29 Total: 10.61 kcal
Atomic # 6 Polarization: 23.90 SS G_CDS: -3.17 Total: 20.73 kcal
Atomic # 7 Polarization: -40.38 SS G_CDS: 0.41 Total: -39.96 kcal
Atomic # 8 Polarization: -50.35 SS G_CDS: -1.31 Total: -51.65 kcal
Atomic # 14 Polarization: 18.07 SS G_CDS: -5.01 Total: 13.07 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -34.85 -6.99 -41.84 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000737310165.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.715 kcal
(2) G-P(sol) polarization free energy of solvation -34.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.563 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.556 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds