Wall clock time and date at job start Wed Apr 1 2020 02:55:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 N 1.46503 * 109.46966 * 2 1
4 4 N 1.27990 * 118.33096 * 89.99924 * 3 2 1
5 5 C 1.31487 * 124.23612 * 180.02562 * 4 3 2
6 6 C 1.47323 * 120.34197 * 179.97438 * 5 4 3
7 7 O 1.21644 * 120.00318 * 174.68810 * 6 5 4
8 8 N 1.34776 * 120.00313 * 354.68514 * 6 5 4
9 9 C 1.36857 * 119.99957 * 4.54285 * 8 6 5
10 10 H 1.08009 * 120.00030 * 312.04109 * 9 8 6
11 11 C 1.39043 * 120.00614 * 132.04019 * 9 8 6
12 12 N 1.31371 * 119.99752 * 3.50339 * 11 9 8
13 13 Si 1.86799 * 120.00630 * 183.50827 * 11 9 8
14 14 H 1.48498 * 109.47063 * 89.99730 * 13 11 9
15 15 H 1.48491 * 109.47241 * 210.00044 * 13 11 9
16 16 H 1.48502 * 109.46784 * 329.99933 * 13 11 9
17 17 C 1.46500 * 120.00480 * 184.54184 * 8 6 5
18 18 C 1.50703 * 109.47002 * 84.62372 * 17 8 6
19 19 O 1.20821 * 119.99843 * 0.02562 * 18 17 8
20 20 O 1.34233 * 119.99860 * 180.02562 * 18 17 8
21 21 C 1.47537 * 119.31397 * 359.97438 * 5 4 3
22 22 O 1.21860 * 121.91999 * 179.97438 * 21 5 4
23 23 C 1.47451 * 116.16212 * 0.02562 * 21 5 4
24 24 C 1.39227 * 122.15740 * 180.02562 * 23 21 5
25 25 C 1.36798 * 119.51569 * 179.97438 * 24 23 21
26 26 C 1.38845 * 120.49955 * 0.02562 * 25 24 23
27 27 C 1.37752 * 120.86289 * 359.97262 * 26 25 24
28 28 C 1.37321 * 118.32301 * 269.99653 * 3 2 1
29 29 H 1.09000 * 109.47217 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.47727 * 300.00163 * 1 2 3
31 31 H 1.09000 * 109.47075 * 60.00248 * 1 2 3
32 32 H 1.08993 * 109.47370 * 239.99751 * 2 1 3
33 33 H 1.09000 * 109.47075 * 119.99751 * 2 1 3
34 34 H 0.96998 * 120.00287 * 179.97438 * 12 11 9
35 35 H 1.09000 * 109.47297 * 204.62486 * 17 8 6
36 36 H 1.09005 * 109.46618 * 324.62840 * 17 8 6
37 37 H 0.96696 * 116.99688 * 180.02562 * 20 18 17
38 38 H 1.07994 * 120.24204 * 359.96984 * 24 23 21
39 39 H 1.08005 * 119.74929 * 179.97438 * 25 24 23
40 40 H 1.07999 * 119.56970 * 179.97438 * 26 25 24
41 41 H 1.07996 * 120.16354 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 7 2.2207 1.9539 1.1266
5 6 2.6561 3.1872 1.2619
6 6 2.8588 3.7620 2.6031
7 8 3.3525 4.8673 2.7230
8 7 2.4971 3.0633 3.6974
9 6 2.0283 1.7840 3.5685
10 1 1.2655 1.5595 2.8375
11 6 2.5338 0.7732 4.3784
12 7 3.4111 1.0581 5.3139
13 14 1.9658 -0.9898 4.1364
14 1 2.8563 -1.6671 3.1601
15 1 2.0167 -1.7088 5.4346
16 1 0.5727 -0.9947 3.6221
17 6 2.6058 3.6732 5.0250
18 6 1.3706 4.4896 5.3054
19 8 0.4896 4.5549 4.4811
20 8 1.2490 5.1443 6.4710
21 6 2.9397 3.9894 0.0566
22 8 3.3444 5.1367 0.1267
23 6 2.7043 3.3235 -1.2378
24 6 2.9314 3.9642 -2.4529
25 6 2.6952 3.2948 -3.6222
26 6 2.2319 1.9860 -3.6038
27 6 2.0012 1.3348 -2.4121
28 6 2.2354 1.9955 -1.2088
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3635 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8899
33 1 1.8932 -0.5138 0.8900
34 1 3.7635 0.3530 5.8792
35 1 2.7027 2.8906 5.7776
36 1 3.4833 4.3190 5.0573
37 1 0.4387 5.6544 6.6055
38 1 3.2912 4.9823 -2.4721
39 1 2.8697 3.7883 -4.5670
40 1 2.0501 1.4718 -4.5360
41 1 1.6412 0.3166 -2.4109
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000737310165.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:15
Heat of formation + Delta-G solvation = -78.516988 kcal
Electronic energy + Delta-G solvation = -31231.396856 eV
Core-core repulsion = 26884.790614 eV
Total energy + Delta-G solvation = -4346.606243 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.71869 -41.38274 -40.18284 -39.55224 -38.75428 -37.11357 -36.62659 -35.42941
-33.51560 -32.45932 -31.98538 -31.16310 -29.56840 -27.05520 -26.04606 -25.46965
-24.78212 -23.14169 -22.18282 -21.59960 -20.23619 -20.19745 -19.13163 -18.87381
-17.95826 -17.68967 -17.15321 -17.11683 -16.77569 -16.53312 -16.36756 -16.14301
-15.72383 -15.57785 -15.35857 -15.21233 -14.98448 -14.68758 -14.46852 -14.02560
-13.59000 -13.44146 -13.26461 -13.17824 -13.11497 -13.00303 -12.85724 -12.74230
-12.48904 -12.39525 -12.04605 -12.02817 -12.01189 -11.60502 -11.08537 -10.92974
-10.77437 -10.20675 -10.15588 -9.53008 -8.83204 -8.29222 -6.14898 -0.45114
-0.35224 0.62717 1.24667 1.27646 1.41807 1.47085 1.53515 1.61738
1.97257 2.30147 2.51814 2.54655 2.86233 3.13391 3.24941 3.27392
3.59926 3.72414 4.03022 4.09076 4.17503 4.24963 4.28853 4.30801
4.40960 4.47958 4.53496 4.65613 4.82195 4.88799 4.92840 4.95723
4.98287 5.28107 5.33518 5.42931 5.48499 5.59206 5.62112 5.85113
5.88131 6.46449 6.52259 7.00473 7.05713 7.15705 7.40018 7.84741
8.74831
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.011104 B = 0.005129 C = 0.003890
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2521.096311 B = 5458.327534 C = 7196.171946
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.093 3.907
3 N -0.326 5.326
4 N -0.095 5.095
5 C -0.104 4.104
6 C 0.537 3.463
7 O -0.614 6.614
8 N -0.422 5.422
9 C -0.317 4.317
10 H 0.107 0.893
11 C 0.002 3.998
12 N -0.903 5.903
13 Si 0.981 3.019
14 H -0.257 1.257
15 H -0.283 1.283
16 H -0.248 1.248
17 C 0.116 3.884
18 C 0.469 3.531
19 O -0.551 6.551
20 O -0.508 6.508
21 C 0.389 3.611
22 O -0.500 6.500
23 C -0.222 4.222
24 C -0.050 4.050
25 C -0.138 4.138
26 C -0.040 4.040
27 C -0.149 4.149
28 C 0.130 3.870
29 H 0.114 0.886
30 H 0.038 0.962
31 H 0.074 0.926
32 H 0.148 0.852
33 H 0.095 0.905
34 H 0.278 0.722
35 H 0.157 0.843
36 H 0.089 0.911
37 H 0.420 0.580
38 H 0.126 0.874
39 H 0.167 0.833
40 H 0.186 0.814
41 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.080 -10.496 -15.920 20.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.024 4.024
3 N -0.129 5.129
4 N 0.071 4.929
5 C -0.276 4.276
6 C 0.327 3.673
7 O -0.499 6.499
8 N -0.141 5.141
9 C -0.447 4.447
10 H 0.124 0.876
11 C -0.200 4.200
12 N -0.542 5.542
13 Si 0.802 3.198
14 H -0.182 1.182
15 H -0.209 1.209
16 H -0.171 1.171
17 C -0.009 4.009
18 C 0.312 3.688
19 O -0.441 6.441
20 O -0.320 6.320
21 C 0.272 3.728
22 O -0.378 6.378
23 C -0.227 4.227
24 C -0.069 4.069
25 C -0.157 4.157
26 C -0.058 4.058
27 C -0.170 4.170
28 C 0.027 3.973
29 H 0.132 0.868
30 H 0.057 0.943
31 H 0.093 0.907
32 H 0.165 0.835
33 H 0.114 0.886
34 H 0.088 0.912
35 H 0.174 0.826
36 H 0.107 0.893
37 H 0.281 0.719
38 H 0.144 0.856
39 H 0.185 0.815
40 H 0.203 0.797
41 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -5.662 -10.369 -15.404 19.413
hybrid contribution -0.221 1.039 0.599 1.219
sum -5.882 -9.331 -14.805 18.462
Atomic orbital electron populations
1.22231 0.92677 1.05255 1.02666 1.22641 0.96942 0.75601 1.07263
1.45945 1.52594 1.15150 0.99216 1.71769 1.01616 1.10820 1.08703
1.24117 1.15000 0.92442 0.96050 1.17884 0.80164 0.85177 0.84088
1.90651 1.49672 1.22927 1.86633 1.43096 1.55207 1.13412 1.02395
1.20042 1.20941 0.81570 1.22097 0.87601 1.26504 0.94550 1.04216
0.94756 1.69640 1.29596 1.35399 1.19540 0.85127 0.79991 0.76253
0.78414 1.18195 1.20895 1.17077 1.21197 0.91505 0.97703 0.90478
1.24735 0.89281 0.76297 0.78455 1.90602 1.43466 1.61779 1.48269
1.84521 1.48275 1.61319 1.37897 1.20726 0.75939 0.87220 0.88924
1.90636 1.39362 1.18804 1.89008 1.20277 1.11864 0.95451 0.95098
1.20888 0.95194 1.00037 0.90779 1.21366 1.00538 0.95897 0.97891
1.21793 0.91619 0.93481 0.98922 1.21399 1.04663 1.02424 0.88545
1.19303 0.97438 0.91926 0.88662 0.86756 0.94313 0.90669 0.83468
0.88649 0.91228 0.82638 0.89300 0.71874 0.85561 0.81530 0.79670
0.80076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.98 10.23 71.98 0.74 -2.25 16
2 C 0.09 1.90 5.96 86.38 0.51 2.41 16
3 N -0.33 -10.37 3.29 -339.41 -1.12 -11.49 16
4 N -0.10 -4.15 6.82 -44.50 -0.30 -4.46 16
5 C -0.10 -5.44 6.96 44.04 0.31 -5.14 16
6 C 0.54 31.91 7.42 86.63 0.64 32.55 16
7 O -0.61 -40.04 15.23 14.78 0.23 -39.81 16
8 N -0.42 -23.63 2.04 -643.42 -1.32 -24.94 16
9 C -0.32 -16.52 7.49 84.10 0.63 -15.89 16
10 H 0.11 5.40 6.00 -2.91 -0.02 5.38 16
11 C 0.00 0.07 5.35 84.96 0.45 0.53 16
12 N -0.90 -46.31 10.97 21.68 0.24 -46.07 16
13 Si 0.98 36.37 29.47 68.60 2.02 38.39 16
14 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16
15 H -0.28 -10.52 7.11 99.48 0.71 -9.82 16
16 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16
17 C 0.12 6.04 5.48 85.63 0.47 6.51 16
18 C 0.47 22.63 8.36 71.24 0.60 23.22 16
19 O -0.55 -29.82 17.07 21.98 0.38 -29.45 16
20 O -0.51 -18.73 13.42 -51.45 -0.69 -19.42 16
21 C 0.39 19.31 7.18 27.15 0.19 19.51 16
22 O -0.50 -28.29 16.04 14.09 0.23 -28.06 16
23 C -0.22 -8.04 5.90 -19.97 -0.12 -8.16 16
24 C -0.05 -1.42 9.66 22.17 0.21 -1.20 16
25 C -0.14 -2.31 9.98 22.08 0.22 -2.09 16
26 C -0.04 -0.47 10.00 22.30 0.22 -0.24 16
27 C -0.15 -2.35 9.16 22.40 0.21 -2.15 16
28 C 0.13 3.72 6.57 39.17 0.26 3.97 16
29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16
30 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16
31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
32 H 0.15 1.47 6.08 -2.39 -0.01 1.46 16
33 H 0.10 2.19 8.04 -2.39 -0.02 2.17 16
34 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16
35 H 0.16 8.07 5.50 -2.39 -0.01 8.06 16
36 H 0.09 4.71 7.53 -2.38 -0.02 4.69 16
37 H 0.42 10.84 9.10 -74.06 -0.67 10.17 16
38 H 0.13 3.74 7.87 -2.91 -0.02 3.72 16
39 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16
40 H 0.19 0.38 8.06 -2.91 -0.02 0.35 16
41 H 0.18 1.25 6.14 -2.91 -0.02 1.23 16
Total: -1.00 -90.47 356.49 5.65 -84.82
By element:
Atomic # 1 Polarization: 28.44 SS G_CDS: 0.45 Total: 28.89 kcal
Atomic # 6 Polarization: 46.05 SS G_CDS: 5.55 Total: 51.60 kcal
Atomic # 7 Polarization: -84.46 SS G_CDS: -2.50 Total: -86.95 kcal
Atomic # 8 Polarization: -116.88 SS G_CDS: 0.14 Total: -116.74 kcal
Atomic # 14 Polarization: 36.37 SS G_CDS: 2.02 Total: 38.39 kcal
Total: -90.47 5.65 -84.82 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000737310165.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.300 kcal
(2) G-P(sol) polarization free energy of solvation -90.471 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.170 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds