Wall clock time and date at job start Wed Apr 1 2020 03:06:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34236 * 117.00012 * 2 1
4 4 O 1.20828 * 119.99335 * 0.02562 * 3 2 1
5 5 C 1.50696 * 120.00326 * 180.02562 * 3 2 1
6 6 N 1.46494 * 109.47377 * 180.02562 * 5 3 2
7 7 C 1.36797 * 120.00120 * 264.58730 * 6 5 3
8 8 H 1.07998 * 120.00332 * 132.12391 * 7 6 5
9 9 C 1.39087 * 119.99556 * 312.12625 * 7 6 5
10 10 N 1.31342 * 119.99994 * 3.34936 * 9 7 6
11 11 Si 1.86801 * 119.99982 * 183.34300 * 9 7 6
12 12 H 1.48496 * 109.46839 * 60.00208 * 11 9 7
13 13 H 1.48503 * 109.47018 * 180.02562 * 11 9 7
14 14 H 1.48501 * 109.47302 * 300.00157 * 11 9 7
15 15 C 1.34771 * 120.00478 * 84.58074 * 6 5 3
16 16 O 1.21643 * 119.99583 * 4.73689 * 15 6 5
17 17 C 1.47474 * 120.00510 * 184.73594 * 15 6 5
18 18 N 1.31179 * 120.39518 * 354.20822 * 17 15 6
19 19 N 1.27937 * 124.23594 * 180.02562 * 18 17 15
20 20 C 1.46497 * 118.23997 * 180.02562 * 19 18 17
21 21 C 1.34888 * 123.52268 * 359.97438 * 19 18 17
22 22 O 1.21736 * 120.76773 * 179.97438 * 21 19 18
23 23 C 1.46957 * 118.46375 * 0.02562 * 21 19 18
24 24 C 1.39130 * 122.90263 * 179.97438 * 23 21 19
25 25 C 1.37871 * 119.34593 * 180.02562 * 24 23 21
26 26 C 1.38869 * 120.73607 * 359.97438 * 25 24 23
27 27 C 1.37902 * 120.79471 * 0.02562 * 26 25 24
28 28 C 1.39047 * 119.39127 * 359.97438 * 27 26 25
29 29 H 1.09004 * 109.47146 * 299.99718 * 1 2 3
30 30 H 1.08999 * 109.47304 * 60.00104 * 1 2 3
31 31 H 1.09002 * 109.46892 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47331 * 59.99750 * 5 3 2
33 33 H 1.09005 * 109.47048 * 300.00267 * 5 3 2
34 34 H 0.97007 * 119.99671 * 180.02562 * 10 9 7
35 35 H 1.09000 * 109.46737 * 269.97695 * 20 19 18
36 36 H 1.09001 * 109.47258 * 29.97176 * 20 19 18
37 37 H 1.09003 * 109.47504 * 149.98067 * 20 19 18
38 38 H 1.08005 * 120.32798 * 0.02562 * 24 23 21
39 39 H 1.07998 * 119.63340 * 179.97438 * 25 24 23
40 40 H 1.07999 * 119.60635 * 180.02562 * 26 25 24
41 41 H 1.07991 * 120.30600 * 179.72595 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1961 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2750 -0.0006
6 7 3.9817 2.6798 0.0002
7 6 4.2823 3.3049 -1.1790
8 1 3.8645 4.2766 -1.3969
9 6 5.1260 2.6888 -2.0972
10 7 5.5815 1.4795 -1.8620
11 14 5.6113 3.5811 -3.6648
12 1 6.3165 4.8413 -3.3189
13 1 6.5101 2.7151 -4.4694
14 1 4.3925 3.8961 -4.4527
15 6 4.0676 3.3566 1.1624
16 8 3.8842 2.7793 2.2173
17 6 4.3837 4.7971 1.1555
18 7 4.6940 5.4030 0.0342
19 7 4.9808 6.6465 -0.0565
20 6 5.3080 7.1879 -1.3779
21 6 4.9973 7.4861 0.9991
22 8 5.2782 8.6619 0.8553
23 6 4.6693 6.9484 2.3269
24 6 4.6587 7.7306 3.4775
25 6 4.3406 7.1495 4.6866
26 6 4.0319 5.7978 4.7650
27 6 4.0370 5.0058 3.6362
28 6 4.3550 5.5720 2.4067
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 3.9558 0.7811 -0.8908
33 1 3.9565 0.7807 0.8892
34 1 6.1702 1.0500 -2.5023
35 1 6.3813 7.1051 -1.5488
36 1 4.7737 6.6253 -2.1435
37 1 5.0125 8.2361 -1.4245
38 1 4.8973 8.7826 3.4240
39 1 4.3313 7.7522 5.5827
40 1 3.7850 5.3616 5.7216
41 1 3.8000 3.9546 3.7069
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000737860225.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:21
Heat of formation + Delta-G solvation = -47.370448 kcal
Electronic energy + Delta-G solvation = -31062.348852 eV
Core-core repulsion = 26717.093225 eV
Total energy + Delta-G solvation = -4345.255627 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.120 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.38146 -39.85479 -38.71998 -38.20338 -37.24278 -35.81826 -34.94293 -33.06107
-31.79503 -31.09750 -30.31894 -28.83991 -27.42282 -26.39814 -25.48902 -24.30767
-23.29601 -22.14348 -20.82938 -19.86524 -18.66421 -18.41572 -17.55573 -17.00791
-16.46316 -16.21508 -16.04572 -15.73900 -15.38220 -15.28300 -14.77604 -14.46074
-14.39595 -13.99762 -13.85889 -13.60393 -13.26103 -12.90007 -12.86660 -12.75452
-12.37342 -12.33026 -11.99088 -11.77896 -11.71135 -11.52354 -11.44998 -11.31830
-11.24022 -10.86836 -10.60287 -10.50522 -10.27736 -9.78733 -9.42302 -9.33146
-9.07192 -8.91455 -8.73757 -7.83045 -7.66357 -6.56337 -4.33147 0.85875
1.00441 2.07525 2.66314 2.95221 3.01841 3.06656 3.10232 3.12847
3.25824 3.82432 3.97766 4.12653 4.38369 4.41684 4.88281 4.88956
5.00695 5.13723 5.32850 5.38405 5.42352 5.48785 5.54930 5.59015
5.59410 5.67969 5.81796 5.86921 5.87902 6.02694 6.17096 6.26319
6.35587 6.42922 6.60964 6.70512 6.78412 6.97720 7.04226 7.40085
7.63835 7.85715 8.24503 8.51424 8.71870 8.88850 9.12497 9.55991
10.46250
Molecular weight = 345.12amu
Principal moments of inertia in cm(-1)
A = 0.009587 B = 0.005346 C = 0.003780
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2919.976445 B = 5235.876459 C = 7405.236361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.367 6.367
3 C 0.446 3.554
4 O -0.508 6.508
5 C 0.117 3.883
6 N -0.399 5.399
7 C -0.305 4.305
8 H 0.111 0.889
9 C 0.046 3.954
10 N -0.872 5.872
11 Si 0.923 3.077
12 H -0.266 1.266
13 H -0.282 1.282
14 H -0.270 1.270
15 C 0.551 3.449
16 O -0.587 6.587
17 C 0.070 3.930
18 N -0.157 5.157
19 N -0.374 5.374
20 C 0.088 3.912
21 C 0.507 3.493
22 O -0.528 6.528
23 C -0.147 4.147
24 C -0.060 4.060
25 C -0.130 4.130
26 C -0.096 4.096
27 C -0.095 4.095
28 C -0.020 4.020
29 H 0.056 0.944
30 H 0.056 0.944
31 H 0.093 0.907
32 H 0.160 0.840
33 H 0.103 0.897
34 H 0.277 0.723
35 H 0.074 0.926
36 H 0.094 0.906
37 H 0.090 0.910
38 H 0.135 0.865
39 H 0.128 0.872
40 H 0.129 0.871
41 H 0.173 0.827
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.686 2.858 4.199 5.746
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.284 6.284
3 C 0.288 3.712
4 O -0.395 6.395
5 C -0.008 4.008
6 N -0.116 5.116
7 C -0.435 4.435
8 H 0.128 0.872
9 C -0.160 4.160
10 N -0.509 5.509
11 Si 0.749 3.251
12 H -0.191 1.191
13 H -0.208 1.208
14 H -0.195 1.195
15 C 0.340 3.660
16 O -0.472 6.472
17 C -0.107 4.107
18 N 0.021 4.979
19 N -0.192 5.192
20 C -0.053 4.053
21 C 0.301 3.699
22 O -0.405 6.405
23 C -0.153 4.153
24 C -0.079 4.079
25 C -0.149 4.149
26 C -0.115 4.115
27 C -0.114 4.114
28 C -0.024 4.024
29 H 0.075 0.925
30 H 0.075 0.925
31 H 0.111 0.889
32 H 0.177 0.823
33 H 0.121 0.879
34 H 0.087 0.913
35 H 0.092 0.908
36 H 0.112 0.888
37 H 0.109 0.891
38 H 0.153 0.847
39 H 0.146 0.854
40 H 0.147 0.853
41 H 0.190 0.810
Dipole moment (debyes) X Y Z Total
from point charges -2.581 3.340 3.564 5.524
hybrid contribution -0.007 0.745 -0.164 0.763
sum -2.589 4.085 3.400 5.912
Atomic orbital electron populations
1.23095 0.78072 1.02640 1.01982 1.86549 1.22199 1.34717 1.84892
1.25306 0.93583 0.80868 0.71429 1.90589 1.67118 1.36438 1.45325
1.21358 0.83988 0.87229 1.08194 1.42891 1.54500 1.08566 1.05668
1.19905 1.25794 1.03784 0.94007 0.87154 1.25607 0.94704 0.95703
0.99992 1.69505 1.31689 1.12673 1.37046 0.86058 0.78920 0.79699
0.80434 1.19055 1.20755 1.19539 1.17313 0.80757 0.83812 0.84111
1.90502 1.57646 1.68261 1.30798 1.22637 1.05683 0.95524 0.86906
1.71850 1.05729 0.94049 1.26245 1.46519 1.57566 1.05054 1.10099
1.22047 1.02406 0.99994 0.80841 1.19196 0.78571 0.86531 0.85613
1.90784 1.48882 1.15435 1.85430 1.19938 1.07500 0.94000 0.93843
1.20849 0.96686 0.99690 0.90707 1.21211 1.00930 0.95425 0.97348
1.21476 0.97534 0.93588 0.98904 1.22125 0.96039 1.03142 0.90136
1.19510 0.96936 0.91526 0.94426 0.92519 0.92494 0.88889 0.82333
0.87938 0.91251 0.90771 0.88770 0.89122 0.84725 0.85440 0.85302
0.80967
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.52 10.56 101.05 1.07 1.58 16
2 O -0.37 -6.74 10.57 -39.27 -0.41 -7.15 16
3 C 0.45 9.63 7.99 36.00 0.29 9.91 16
4 O -0.51 -12.19 16.06 -18.75 -0.30 -12.49 16
5 C 0.12 2.61 5.48 -5.20 -0.03 2.58 16
6 N -0.40 -9.60 2.04 -117.31 -0.24 -9.84 16
7 C -0.30 -7.32 7.50 -15.02 -0.11 -7.43 16
8 H 0.11 2.66 6.00 -52.49 -0.32 2.34 16
9 C 0.05 1.07 5.35 -17.45 -0.09 0.97 16
10 N -0.87 -20.78 10.97 55.50 0.61 -20.17 16
11 Si 0.92 18.26 29.56 -169.99 -5.02 13.24 16
12 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16
13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16
14 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16
15 C 0.55 13.12 7.41 -12.50 -0.09 13.02 16
16 O -0.59 -14.04 13.36 5.24 0.07 -13.97 16
17 C 0.07 1.55 6.94 -80.74 -0.56 0.99 16
18 N -0.16 -3.34 6.81 34.50 0.23 -3.11 16
19 N -0.37 -7.19 3.62 -68.29 -0.25 -7.44 16
20 C 0.09 1.36 10.52 59.85 0.63 1.99 16
21 C 0.51 9.81 7.68 -12.68 -0.10 9.71 16
22 O -0.53 -10.51 16.15 5.16 0.08 -10.43 16
23 C -0.15 -2.70 5.90 -104.83 -0.62 -3.32 16
24 C -0.06 -0.92 9.70 -39.38 -0.38 -1.30 16
25 C -0.13 -1.67 10.01 -39.48 -0.40 -2.07 16
26 C -0.10 -1.33 10.01 -39.47 -0.40 -1.72 16
27 C -0.09 -1.66 9.35 -39.40 -0.37 -2.03 16
28 C -0.02 -0.39 5.90 -104.75 -0.62 -1.01 16
29 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16
30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16
31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16
32 H 0.16 3.62 5.50 -51.93 -0.29 3.34 16
33 H 0.10 2.20 7.52 -51.93 -0.39 1.81 16
34 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16
35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
36 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16
37 H 0.09 1.26 7.32 -51.93 -0.38 0.88 16
38 H 0.13 1.85 7.87 -52.48 -0.41 1.43 16
39 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16
40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16
41 H 0.17 3.25 5.24 -52.49 -0.28 2.97 16
LS Contribution 355.32 15.07 5.35 5.35
Total: -1.00 -29.71 355.32 -5.81 -35.52
By element:
Atomic # 1 Polarization: 12.76 SS G_CDS: -4.15 Total: 8.61 kcal
Atomic # 6 Polarization: 23.66 SS G_CDS: -1.78 Total: 21.88 kcal
Atomic # 7 Polarization: -40.91 SS G_CDS: 0.36 Total: -40.56 kcal
Atomic # 8 Polarization: -43.48 SS G_CDS: -0.56 Total: -44.04 kcal
Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -29.71 -5.81 -35.52 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000737860225.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.853 kcal
(2) G-P(sol) polarization free energy of solvation -29.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.564 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.370 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds