Wall clock time and date at job start Wed Apr 1 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36078 * 117.00121 * 2 1 4 4 C 1.35733 * 127.25570 * 0.32996 * 3 2 1 5 5 N 1.36143 * 107.06998 * 180.10229 * 4 3 2 6 6 C 1.40070 * 124.92965 * 179.87466 * 5 4 3 7 7 C 1.38869 * 120.07161 * 359.44537 * 6 5 4 8 8 C 1.38117 * 119.93110 * 180.23202 * 7 6 5 9 9 C 1.38282 * 120.06777 * 0.06131 * 8 7 6 10 10 C 1.38281 * 120.14027 * 359.96044 * 9 8 7 11 11 C 1.38108 * 120.07283 * 359.97438 * 10 9 8 12 12 N 1.28458 * 110.13640 * 359.60550 * 5 4 3 13 13 C 1.32038 * 110.21081 * 0.24490 * 12 5 4 14 14 C 1.47375 * 126.44992 * 179.97438 * 13 12 5 15 15 O 1.21626 * 120.00059 * 173.90128 * 14 13 12 16 16 N 1.34776 * 119.99962 * 353.90646 * 14 13 12 17 17 C 1.36911 * 119.99943 * 183.94283 * 16 14 13 18 18 H 1.07998 * 120.00052 * 22.49471 * 17 16 14 19 19 C 1.39021 * 119.99878 * 202.49047 * 17 16 14 20 20 N 1.31388 * 120.00034 * 23.85797 * 19 17 16 21 21 Si 1.86801 * 119.99915 * 203.85548 * 19 17 16 22 22 H 1.48495 * 109.47145 * 90.00130 * 21 19 17 23 23 H 1.48507 * 109.46937 * 210.00120 * 21 19 17 24 24 H 1.48497 * 109.46955 * 329.99896 * 21 19 17 25 25 C 1.46501 * 120.00105 * 3.94071 * 16 14 13 26 26 C 1.50694 * 109.47331 * 85.92112 * 25 16 14 27 27 O 1.20827 * 119.99982 * 0.02562 * 26 25 16 28 28 O 1.34234 * 120.00449 * 180.02562 * 26 25 16 29 29 H 1.09000 * 109.46899 * 299.99692 * 1 2 3 30 30 H 1.09000 * 109.47592 * 60.00134 * 1 2 3 31 31 H 1.09005 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.07998 * 126.47017 * 359.95580 * 4 3 2 33 33 H 1.08003 * 120.03345 * 0.24656 * 7 6 5 34 34 H 1.08002 * 119.96047 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.92519 * 179.97438 * 9 8 7 36 36 H 1.08006 * 119.96417 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.03883 * 180.02562 * 11 10 9 38 38 H 0.96993 * 120.00111 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.47187 * 205.92326 * 25 16 14 40 40 H 1.09003 * 109.47039 * 325.92190 * 25 16 14 41 41 H 0.96700 * 117.00421 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.4573 2.4351 0.0062 5 7 2.4559 3.3603 0.0012 6 6 2.2638 4.7478 0.0025 7 6 0.9780 5.2722 -0.0022 8 6 0.7919 6.6408 -0.0057 9 6 1.8844 7.4885 -0.0058 10 6 3.1661 6.9694 -0.0015 11 6 3.3588 5.6019 0.0033 12 7 3.6000 2.7761 0.0007 13 6 3.4428 1.4652 0.0000 14 6 4.5155 0.4546 -0.0013 15 8 4.2401 -0.7248 0.1100 16 7 5.8018 0.8375 -0.1257 17 6 6.7916 -0.1049 -0.2081 18 1 6.5571 -1.1072 -0.5348 19 6 8.0985 0.2286 0.1288 20 7 8.3312 1.2341 0.9418 21 14 9.5237 -0.7531 -0.5745 22 1 9.9612 -0.1422 -1.8553 23 1 10.6536 -0.7451 0.3892 24 1 9.0893 -2.1524 -0.8164 25 6 6.1408 2.2619 -0.1728 26 6 6.2911 2.7892 1.2309 27 8 6.1319 2.0508 2.1739 28 8 6.6019 4.0793 1.4337 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.3962 2.6361 0.0115 33 1 0.1243 4.6106 -0.0029 34 1 -0.2079 7.0492 -0.0090 35 1 1.7362 8.5583 -0.0090 36 1 4.0173 7.6342 -0.0012 37 1 4.3601 5.1970 0.0071 38 1 9.2431 1.4665 1.1771 39 1 7.0781 2.3947 -0.7130 40 1 5.3470 2.8077 -0.6828 41 1 6.6879 4.3711 2.3515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738148201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:26 Heat of formation + Delta-G solvation = -10.127884 kcal Electronic energy + Delta-G solvation = -31079.210772 eV Core-core repulsion = 26735.570104 eV Total energy + Delta-G solvation = -4343.640669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.64394 -39.34821 -39.02479 -38.01702 -37.76265 -35.05509 -34.27501 -33.35694 -31.77360 -31.40211 -29.82225 -29.26007 -27.50924 -27.11129 -25.48051 -23.54864 -23.08222 -21.52364 -20.86673 -20.62745 -19.47742 -18.26585 -17.02366 -16.81390 -16.74073 -16.25547 -16.21622 -16.16038 -15.43665 -15.01019 -14.89961 -14.71186 -14.57137 -14.39367 -14.27371 -13.93312 -13.66427 -13.28104 -12.99977 -12.71427 -12.60618 -11.84700 -11.80914 -11.73518 -11.60827 -11.37463 -11.32825 -11.30358 -11.01498 -10.50239 -10.37140 -10.25174 -10.01114 -9.72341 -9.41490 -9.22171 -8.97172 -8.70152 -8.62681 -7.84208 -7.70396 -6.43074 -3.86407 0.70776 1.13171 2.20303 2.47141 2.51512 3.20721 3.26410 3.32196 3.54506 3.61769 3.78778 3.97361 4.20249 4.43196 4.51725 4.58876 4.69187 4.82732 4.87155 5.01556 5.12740 5.15546 5.16169 5.25711 5.38145 5.40979 5.50132 5.56245 5.79761 5.85801 6.09293 6.15667 6.20384 6.30742 6.35988 6.49841 6.60510 6.69361 7.11480 7.54177 7.59614 7.70945 8.02228 8.17383 8.42694 9.10308 9.22089 9.38305 9.90736 10.63595 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.004513 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.215953 B = 6203.166992 C = 8178.041879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.269 6.269 3 C 0.068 3.932 4 C -0.111 4.111 5 N -0.239 5.239 6 C 0.154 3.846 7 C -0.137 4.137 8 C -0.098 4.098 9 C -0.131 4.131 10 C -0.094 4.094 11 C -0.113 4.113 12 N -0.254 5.254 13 C 0.031 3.969 14 C 0.528 3.472 15 O -0.554 6.554 16 N -0.408 5.408 17 C -0.306 4.306 18 H 0.110 0.890 19 C 0.033 3.967 20 N -0.858 5.858 21 Si 0.929 3.071 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.138 3.862 26 C 0.500 3.500 27 O -0.497 6.497 28 O -0.539 6.539 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.179 0.821 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.271 0.729 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.712 14.212 -3.432 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.178 6.178 3 C 0.013 3.987 4 C -0.249 4.249 5 N -0.023 5.023 6 C 0.062 3.938 7 C -0.157 4.157 8 C -0.117 4.117 9 C -0.150 4.150 10 C -0.113 4.113 11 C -0.133 4.133 12 N -0.088 5.088 13 C -0.130 4.130 14 C 0.315 3.685 15 O -0.434 6.434 16 N -0.126 5.126 17 C -0.434 4.434 18 H 0.127 0.873 19 C -0.172 4.172 20 N -0.496 5.496 21 Si 0.756 3.244 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.191 1.191 25 C 0.012 3.988 26 C 0.339 3.661 27 O -0.381 6.381 28 O -0.350 6.350 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.196 0.804 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.920 13.929 -3.433 19.306 hybrid contribution -0.031 -0.522 0.637 0.824 sum -12.950 13.407 -2.796 18.849 Atomic orbital electron populations 1.23045 0.79439 1.03886 1.00545 1.86344 1.19737 1.22554 1.89212 1.18780 0.91486 0.84788 1.03613 1.22340 0.95747 0.87905 1.18919 1.42160 1.03506 1.04230 1.52439 1.17665 0.95049 0.78538 1.02504 1.20806 0.94593 0.96225 1.04108 1.20931 0.99366 0.92051 0.99330 1.21237 0.92578 1.00081 1.01110 1.21103 0.97596 0.94252 0.98337 1.21135 0.99070 0.92967 1.00126 1.73890 1.07225 1.06960 1.20689 1.22379 0.92893 0.89841 1.07928 1.16550 0.81378 0.86369 0.84181 1.90677 1.81757 1.16457 1.54549 1.43249 1.04612 1.04260 1.60526 1.19736 0.85566 0.95133 1.42953 0.87270 1.25373 0.99310 0.97790 0.94734 1.69900 1.21585 1.29827 1.28293 0.85872 0.79777 0.80229 0.78556 1.20146 1.21036 1.19102 1.20866 1.03404 0.83364 0.91202 1.23394 0.71317 0.78041 0.93312 1.90595 1.46322 1.56978 1.44179 1.84485 1.84391 1.30864 1.35259 0.93285 0.93262 0.88241 0.80405 0.85294 0.85192 0.85552 0.84858 0.83511 0.91896 0.87450 0.87472 0.75617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.22 101.05 1.03 1.35 16 2 O -0.27 -5.14 10.13 -21.82 -0.22 -5.36 16 3 C 0.07 1.34 7.05 -39.09 -0.28 1.07 16 4 C -0.11 -1.73 9.91 -16.53 -0.16 -1.89 16 5 N -0.24 -4.01 3.52 -10.40 -0.04 -4.05 16 6 C 0.15 2.11 6.66 -83.62 -0.56 1.55 16 7 C -0.14 -1.42 9.43 -39.39 -0.37 -1.79 16 8 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 9 C -0.13 -1.09 10.04 -39.55 -0.40 -1.48 16 10 C -0.09 -0.93 10.04 -39.61 -0.40 -1.32 16 11 C -0.11 -1.47 9.59 -39.39 -0.38 -1.85 16 12 N -0.25 -5.14 7.08 33.45 0.24 -4.90 16 13 C 0.03 0.73 6.83 -82.67 -0.56 0.16 16 14 C 0.53 14.48 7.49 -12.54 -0.09 14.39 16 15 O -0.55 -16.77 16.26 3.43 0.06 -16.71 16 16 N -0.41 -11.09 2.13 -117.34 -0.25 -11.34 16 17 C -0.31 -8.71 9.18 -14.99 -0.14 -8.84 16 18 H 0.11 3.20 7.52 -52.49 -0.39 2.81 16 19 C 0.03 0.89 4.76 -17.45 -0.08 0.81 16 20 N -0.86 -23.38 9.09 55.50 0.50 -22.88 16 21 Si 0.93 20.67 29.62 -169.99 -5.03 15.64 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 C 0.14 3.28 4.81 -5.20 -0.03 3.26 16 26 C 0.50 11.98 5.72 36.00 0.21 12.19 16 27 O -0.50 -14.07 16.17 -18.75 -0.30 -14.37 16 28 O -0.54 -10.35 13.42 -39.27 -0.53 -10.88 16 29 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.18 1.92 6.64 -52.49 -0.35 1.57 16 33 H 0.13 1.08 6.65 -52.48 -0.35 0.73 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.15 2.13 7.64 -52.49 -0.40 1.73 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.11 2.54 6.99 -51.93 -0.36 2.17 16 40 H 0.11 2.30 5.16 -51.93 -0.27 2.03 16 41 H 0.39 5.97 9.10 45.56 0.41 6.39 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -37.90 357.06 -6.18 -44.07 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.38 Total: 8.99 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: -2.60 Total: 16.39 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.45 Total: -43.16 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.00 Total: -47.32 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.90 -6.18 -44.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738148201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.946 kcal (2) G-P(sol) polarization free energy of solvation -37.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds