Wall clock time and date at job start Wed Apr 1 2020 03:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36078 * 117.00121 * 2 1 4 4 C 1.35733 * 127.25570 * 0.32996 * 3 2 1 5 5 N 1.36143 * 107.06998 * 180.10229 * 4 3 2 6 6 C 1.40070 * 124.92965 * 179.87466 * 5 4 3 7 7 C 1.38869 * 120.07161 * 359.44537 * 6 5 4 8 8 C 1.38117 * 119.93110 * 180.23202 * 7 6 5 9 9 C 1.38282 * 120.06777 * 0.06131 * 8 7 6 10 10 C 1.38281 * 120.14027 * 359.96044 * 9 8 7 11 11 C 1.38108 * 120.07283 * 359.97438 * 10 9 8 12 12 N 1.28458 * 110.13640 * 359.60550 * 5 4 3 13 13 C 1.32038 * 110.21081 * 0.24490 * 12 5 4 14 14 C 1.47375 * 126.44992 * 179.97438 * 13 12 5 15 15 O 1.21626 * 120.00059 * 173.90128 * 14 13 12 16 16 N 1.34776 * 119.99962 * 353.90646 * 14 13 12 17 17 C 1.36911 * 119.99943 * 183.94283 * 16 14 13 18 18 H 1.07998 * 120.00052 * 22.49471 * 17 16 14 19 19 C 1.39021 * 119.99878 * 202.49047 * 17 16 14 20 20 N 1.31388 * 120.00034 * 23.85797 * 19 17 16 21 21 Si 1.86801 * 119.99915 * 203.85548 * 19 17 16 22 22 H 1.48495 * 109.47145 * 90.00130 * 21 19 17 23 23 H 1.48507 * 109.46937 * 210.00120 * 21 19 17 24 24 H 1.48497 * 109.46955 * 329.99896 * 21 19 17 25 25 C 1.46501 * 120.00105 * 3.94071 * 16 14 13 26 26 C 1.50694 * 109.47331 * 85.92112 * 25 16 14 27 27 O 1.20827 * 119.99982 * 0.02562 * 26 25 16 28 28 O 1.34234 * 120.00449 * 180.02562 * 26 25 16 29 29 H 1.09000 * 109.46899 * 299.99692 * 1 2 3 30 30 H 1.09000 * 109.47592 * 60.00134 * 1 2 3 31 31 H 1.09005 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.07998 * 126.47017 * 359.95580 * 4 3 2 33 33 H 1.08003 * 120.03345 * 0.24656 * 7 6 5 34 34 H 1.08002 * 119.96047 * 180.02562 * 8 7 6 35 35 H 1.07997 * 119.92519 * 179.97438 * 9 8 7 36 36 H 1.08006 * 119.96417 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.03883 * 180.02562 * 11 10 9 38 38 H 0.96993 * 120.00111 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.47187 * 205.92326 * 25 16 14 40 40 H 1.09003 * 109.47039 * 325.92190 * 25 16 14 41 41 H 0.96700 * 117.00421 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.4573 2.4351 0.0062 5 7 2.4559 3.3603 0.0012 6 6 2.2638 4.7478 0.0025 7 6 0.9780 5.2722 -0.0022 8 6 0.7919 6.6408 -0.0057 9 6 1.8844 7.4885 -0.0058 10 6 3.1661 6.9694 -0.0015 11 6 3.3588 5.6019 0.0033 12 7 3.6000 2.7761 0.0007 13 6 3.4428 1.4652 0.0000 14 6 4.5155 0.4546 -0.0013 15 8 4.2401 -0.7248 0.1100 16 7 5.8018 0.8375 -0.1257 17 6 6.7916 -0.1049 -0.2081 18 1 6.5571 -1.1072 -0.5348 19 6 8.0985 0.2286 0.1288 20 7 8.3312 1.2341 0.9418 21 14 9.5237 -0.7531 -0.5745 22 1 9.9612 -0.1422 -1.8553 23 1 10.6536 -0.7451 0.3892 24 1 9.0893 -2.1524 -0.8164 25 6 6.1408 2.2619 -0.1728 26 6 6.2911 2.7892 1.2309 27 8 6.1319 2.0508 2.1739 28 8 6.6019 4.0793 1.4337 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.3962 2.6361 0.0115 33 1 0.1243 4.6106 -0.0029 34 1 -0.2079 7.0492 -0.0090 35 1 1.7362 8.5583 -0.0090 36 1 4.0173 7.6342 -0.0012 37 1 4.3601 5.1970 0.0071 38 1 9.2431 1.4665 1.1771 39 1 7.0781 2.3947 -0.7130 40 1 5.3470 2.8077 -0.6828 41 1 6.6879 4.3711 2.3515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738148201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:25 Heat of formation + Delta-G solvation = -37.615487 kcal Electronic energy + Delta-G solvation = -31080.402724 eV Core-core repulsion = 26735.570104 eV Total energy + Delta-G solvation = -4344.832620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.01218 -41.07417 -40.20408 -39.65144 -39.21931 -36.99301 -36.27782 -34.61120 -33.70353 -32.30815 -31.08335 -30.40874 -29.43843 -28.13113 -27.31498 -25.04969 -23.98890 -22.96488 -22.49663 -21.80054 -21.05974 -19.55430 -19.02045 -18.66837 -18.03749 -17.81327 -17.69000 -17.24815 -17.06192 -16.69607 -16.20411 -16.02957 -16.01573 -15.89155 -15.48308 -15.23399 -15.13131 -14.64967 -14.50074 -14.05872 -13.78529 -13.63383 -13.54316 -13.44629 -12.80166 -12.56726 -12.50894 -12.43239 -12.35610 -12.19669 -12.15838 -12.02271 -11.66360 -11.44707 -11.02490 -10.94856 -10.73199 -9.98439 -9.88976 -9.83558 -8.98398 -8.47332 -6.01943 -0.30979 0.37579 0.76967 1.20359 1.28941 1.41540 1.44026 1.56018 1.87236 2.11041 2.31786 2.39810 2.59957 2.81833 2.90831 3.11738 3.29227 3.66422 3.78843 3.95351 4.06610 4.13114 4.28148 4.37799 4.44608 4.45625 4.49113 4.54402 4.59198 4.70415 4.73479 4.84842 4.94377 5.07911 5.28263 5.40500 5.40789 5.54764 5.71679 5.95672 5.98327 6.06888 6.34549 6.40639 6.75207 7.02290 7.21705 7.51620 7.86767 8.58622 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.004513 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.215953 B = 6203.166992 C = 8178.041879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.311 6.311 3 C 0.046 3.954 4 C -0.079 4.079 5 N -0.222 5.222 6 C 0.105 3.895 7 C -0.126 4.126 8 C -0.092 4.092 9 C -0.114 4.114 10 C -0.100 4.100 11 C -0.132 4.132 12 N -0.261 5.261 13 C -0.028 4.028 14 C 0.517 3.483 15 O -0.605 6.605 16 N -0.421 5.421 17 C -0.351 4.351 18 H 0.083 0.917 19 C 0.002 3.998 20 N -0.878 5.878 21 Si 1.001 2.999 22 H -0.255 1.255 23 H -0.277 1.277 24 H -0.273 1.273 25 C 0.143 3.857 26 C 0.512 3.488 27 O -0.546 6.546 28 O -0.519 6.519 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.234 0.766 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.120 0.880 38 H 0.276 0.724 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.174 18.320 -3.911 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.223 6.223 3 C -0.009 4.009 4 C -0.218 4.218 5 N -0.007 5.007 6 C 0.015 3.985 7 C -0.147 4.147 8 C -0.110 4.110 9 C -0.132 4.132 10 C -0.118 4.118 11 C -0.152 4.152 12 N -0.097 5.097 13 C -0.186 4.186 14 C 0.306 3.694 15 O -0.489 6.489 16 N -0.139 5.139 17 C -0.478 4.478 18 H 0.101 0.899 19 C -0.202 4.202 20 N -0.515 5.515 21 Si 0.823 3.177 22 H -0.179 1.179 23 H -0.202 1.202 24 H -0.198 1.198 25 C 0.017 3.983 26 C 0.354 3.646 27 O -0.434 6.434 28 O -0.331 6.331 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.251 0.749 33 H 0.172 0.828 34 H 0.188 0.812 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -15.362 18.122 -3.917 24.078 hybrid contribution 0.511 -1.423 0.829 1.724 sum -14.851 16.699 -3.088 22.560 Atomic orbital electron populations 1.23439 0.75975 1.05664 1.02742 1.86272 1.23454 1.23029 1.89544 1.18886 0.90480 0.86452 1.05067 1.22981 0.97480 0.85788 1.15588 1.42590 1.02861 1.05822 1.49401 1.18154 0.96996 0.76734 1.06608 1.21199 0.93572 0.97722 1.02159 1.21450 1.01292 0.90990 0.97303 1.21742 0.91605 1.02072 0.97762 1.21373 0.99513 0.92948 0.97965 1.21143 0.97970 0.94592 1.01514 1.73671 1.09187 1.05930 1.20930 1.21800 0.93486 0.90288 1.13050 1.17215 0.82401 0.86911 0.82857 1.90588 1.82896 1.18770 1.56654 1.43393 1.04585 1.05294 1.60663 1.19719 0.87203 0.95130 1.45757 0.89911 1.26256 1.00982 0.98903 0.94056 1.69979 1.22305 1.30855 1.28351 0.84840 0.76010 0.78314 0.78527 1.17919 1.20219 1.19772 1.20909 1.03736 0.82122 0.91493 1.23292 0.69961 0.78660 0.92685 1.90573 1.48731 1.58619 1.45508 1.84408 1.83356 1.28311 1.37026 0.91207 0.90641 0.86954 0.74940 0.82782 0.81242 0.81987 0.83051 0.86225 0.91434 0.87837 0.85586 0.73256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.22 113.37 1.16 1.52 16 2 O -0.31 -12.33 10.13 -92.69 -0.94 -13.26 16 3 C 0.05 1.85 7.05 22.59 0.16 2.01 16 4 C -0.08 -2.30 9.91 83.44 0.83 -1.47 16 5 N -0.22 -7.26 3.52 -186.83 -0.66 -7.92 16 6 C 0.10 2.63 6.66 38.13 0.25 2.89 16 7 C -0.13 -2.01 9.43 22.39 0.21 -1.80 16 8 C -0.09 -0.97 10.04 22.25 0.22 -0.75 16 9 C -0.11 -1.25 10.04 22.29 0.22 -1.03 16 10 C -0.10 -1.63 10.04 22.25 0.22 -1.41 16 11 C -0.13 -3.26 9.59 22.39 0.21 -3.05 16 12 N -0.26 -10.90 7.08 -48.07 -0.34 -11.25 16 13 C -0.03 -1.38 6.83 42.42 0.29 -1.09 16 14 C 0.52 30.82 7.49 86.65 0.65 31.47 16 15 O -0.60 -40.11 16.26 -2.36 -0.04 -40.14 16 16 N -0.42 -24.69 2.13 -643.39 -1.37 -26.06 16 17 C -0.35 -21.46 9.18 84.09 0.77 -20.69 16 18 H 0.08 5.33 7.52 -2.91 -0.02 5.31 16 19 C 0.00 0.09 4.76 84.95 0.40 0.49 16 20 N -0.88 -49.35 9.09 21.68 0.20 -49.15 16 21 Si 1.00 43.80 29.62 68.60 2.03 45.83 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C 0.14 7.20 4.81 85.63 0.41 7.61 16 26 C 0.51 25.55 5.72 71.23 0.41 25.96 16 27 O -0.55 -32.48 16.17 21.96 0.36 -32.13 16 28 O -0.52 -20.09 13.42 -51.46 -0.69 -20.78 16 29 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 30 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 31 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.23 3.85 6.64 -2.91 -0.02 3.83 16 33 H 0.15 1.61 6.65 -2.91 -0.02 1.59 16 34 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.12 3.54 7.64 -2.91 -0.02 3.52 16 38 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.10 5.15 6.99 -2.39 -0.02 5.14 16 40 H 0.13 5.76 5.16 -2.39 -0.01 5.74 16 41 H 0.41 12.41 9.10 -74.06 -0.67 11.74 16 Total: -1.00 -93.39 357.06 5.41 -87.98 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.44 Total: 26.22 kcal Atomic # 6 Polarization: 34.23 SS G_CDS: 6.43 Total: 40.66 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -2.17 Total: -94.37 kcal Atomic # 8 Polarization: -105.01 SS G_CDS: -1.31 Total: -106.32 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -93.39 5.41 -87.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738148201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.364 kcal (2) G-P(sol) polarization free energy of solvation -93.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds