Wall clock time and date at job start Wed Apr 1 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36002 * 117.00096 * 2 1 4 4 C 1.38180 * 119.91061 * 0.02562 * 3 2 1 5 5 C 1.39693 * 119.90234 * 180.02562 * 4 3 2 6 6 C 1.47594 * 120.08179 * 180.02562 * 5 4 3 7 7 O 1.21614 * 119.99541 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00515 * 0.28219 * 6 5 4 9 9 C 1.40531 * 120.00490 * 179.72207 * 8 6 5 10 10 C 1.40666 * 126.07873 * 359.68579 * 9 8 6 11 11 N 1.30905 * 108.38313 * 179.81639 * 10 9 8 12 12 N 1.40070 * 108.41095 * 0.44378 * 11 10 9 13 13 C 1.37317 * 126.06427 * 179.68383 * 12 11 10 14 14 H 1.08000 * 119.99681 * 174.18165 * 13 12 11 15 15 C 1.38989 * 120.00465 * 354.17279 * 13 12 11 16 16 N 1.31291 * 119.99830 * 5.94947 * 15 13 12 17 17 Si 1.86802 * 120.00076 * 185.94428 * 15 13 12 18 18 H 1.48500 * 109.47120 * 94.98522 * 17 15 13 19 19 H 1.48505 * 109.46663 * 214.98437 * 17 15 13 20 20 H 1.48503 * 109.46914 * 334.98148 * 17 15 13 21 21 C 1.35695 * 126.08727 * 179.97438 * 9 8 6 22 22 C 1.39665 * 119.83115 * 0.30958 * 5 4 3 23 23 C 1.38380 * 120.05333 * 359.49353 * 22 5 4 24 24 C 1.39107 * 120.00178 * 0.39474 * 23 22 5 25 25 O 1.36066 * 120.72980 * 180.15565 * 24 23 22 26 26 C 1.43151 * 116.75147 * 342.68469 * 25 24 23 27 27 C 1.53476 * 108.25066 * 46.25746 * 26 25 24 28 28 O 1.36162 * 119.23626 * 180.02562 * 23 22 5 29 29 H 1.08991 * 109.46983 * 60.00105 * 1 2 3 30 30 H 1.09000 * 109.47101 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47227 * 299.99506 * 1 2 3 32 32 H 1.08004 * 120.04887 * 0.02951 * 4 3 2 33 33 H 0.97001 * 119.99788 * 359.71699 * 8 6 5 34 34 H 1.07999 * 125.80778 * 359.97438 * 10 9 8 35 35 H 0.96995 * 120.00128 * 180.02562 * 16 15 13 36 36 H 1.07997 * 126.24443 * 359.97438 * 21 9 8 37 37 H 1.07995 * 119.97285 * 179.71422 * 22 5 4 38 38 H 1.09003 * 109.70381 * 286.56873 * 26 25 24 39 39 H 1.08996 * 109.71092 * 165.95003 * 26 25 24 40 40 H 1.08994 * 109.71228 * 180.55024 * 27 26 25 41 41 H 1.08991 * 109.71252 * 59.91203 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2921 2.3695 0.0005 5 6 1.9265 3.6141 0.0000 6 6 1.1246 4.8532 0.0011 7 8 1.6786 5.9358 0.0002 8 7 -0.2213 4.7849 0.0084 9 6 -0.9848 5.9647 0.0154 10 6 -0.4804 7.2778 0.0219 11 7 -1.4920 8.1086 0.0233 12 7 -2.6773 7.3624 0.0281 13 6 -3.9528 7.8711 0.0369 14 1 -4.7996 7.2071 -0.0548 15 6 -4.1540 9.2405 0.1642 16 7 -3.1269 10.0582 0.1585 17 14 -5.8859 9.9173 0.3433 18 1 -6.2013 10.0953 1.7835 19 1 -5.9793 11.2275 -0.3495 20 1 -6.8536 8.9673 -0.2618 21 6 -2.3396 6.0399 0.0226 22 6 3.3215 3.6828 -0.0076 23 6 4.0726 2.5207 -0.0040 24 6 3.4385 1.2826 -0.0011 25 8 4.1625 0.1305 0.0056 26 6 5.5398 0.2329 -0.3711 27 6 6.1527 1.4298 0.3687 28 8 5.4315 2.6071 -0.0111 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2136 2.3122 0.0014 33 1 -0.6631 3.9213 0.0088 34 1 0.5638 7.5536 0.0228 35 1 -3.2673 11.0138 0.2477 36 1 -3.0255 5.2057 0.0237 37 1 3.8143 4.6438 -0.0127 38 1 5.6159 0.3877 -1.4474 39 1 6.0659 -0.6801 -0.0924 40 1 7.2014 1.5358 0.0910 41 1 6.0702 1.2783 1.4448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747438758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:13 Heat of formation + Delta-G solvation = -18.653991 kcal Electronic energy + Delta-G solvation = -29129.037824 eV Core-core repulsion = 24785.027436 eV Total energy + Delta-G solvation = -4344.010388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61819 -40.06017 -39.50503 -38.68188 -37.42263 -36.42687 -34.30888 -33.22547 -31.64427 -30.30158 -30.18906 -29.08655 -27.75224 -27.36798 -25.40736 -24.80567 -23.10827 -21.88325 -20.98239 -20.42889 -19.44740 -19.06245 -18.21464 -17.79036 -17.38804 -16.61901 -16.41844 -16.13094 -15.56618 -15.46028 -15.25337 -15.11626 -15.03139 -14.61658 -14.51360 -14.25163 -13.87148 -13.54454 -13.47547 -13.18049 -12.93422 -12.74316 -12.25371 -11.92615 -11.74215 -11.68220 -11.44434 -11.38198 -11.28186 -10.97745 -10.93710 -10.75935 -10.53461 -10.17362 -9.31714 -9.18081 -8.81757 -8.48778 -8.20207 -8.06153 -6.71185 -6.57276 -4.23692 0.66661 1.10404 2.60327 2.78400 2.88358 2.99278 3.03196 3.04639 3.10069 3.52394 3.56814 3.85832 3.87636 3.92745 4.45576 4.46785 4.48152 4.53584 4.60445 4.72170 4.80840 4.95563 4.97402 4.99526 5.00362 5.07682 5.13958 5.25239 5.30274 5.68291 5.83288 6.02527 6.17183 6.24155 6.46315 6.52654 6.85704 6.90525 6.94873 7.09906 7.22123 7.24742 7.84882 8.14174 8.25741 8.60971 8.81246 9.36639 9.65700 10.38942 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.002207 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.099178 B =12681.524498 C =13796.381746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.304 6.304 3 C 0.132 3.868 4 C -0.179 4.179 5 C -0.073 4.073 6 C 0.542 3.458 7 O -0.527 6.527 8 N -0.614 5.614 9 C -0.061 4.061 10 C -0.030 4.030 11 N -0.261 5.261 12 N -0.142 5.142 13 C -0.323 4.323 14 H 0.117 0.883 15 C 0.046 3.954 16 N -0.768 5.768 17 Si 0.935 3.065 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.083 4.083 22 C -0.089 4.089 23 C 0.079 3.921 24 C 0.034 3.966 25 O -0.294 6.294 26 C 0.019 3.981 27 C 0.019 3.981 28 O -0.299 6.299 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.142 0.858 33 H 0.395 0.605 34 H 0.177 0.823 35 H 0.275 0.725 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.605 -21.276 -0.082 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.217 6.217 3 C 0.086 3.914 4 C -0.198 4.198 5 C -0.076 4.076 6 C 0.329 3.671 7 O -0.405 6.405 8 N -0.256 5.256 9 C -0.166 4.166 10 C -0.205 4.205 11 N -0.092 5.092 12 N 0.091 4.909 13 C -0.456 4.456 14 H 0.134 0.866 15 C -0.171 4.171 16 N -0.394 5.394 17 Si 0.759 3.241 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.234 4.234 22 C -0.109 4.109 23 C 0.034 3.966 24 C -0.012 4.012 25 O -0.208 6.208 26 C -0.057 4.057 27 C -0.057 4.057 28 O -0.213 6.213 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.229 0.771 34 H 0.194 0.806 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.819 -19.237 -0.078 22.578 hybrid contribution -0.815 -1.169 0.074 1.427 sum 11.004 -20.406 -0.004 23.184 Atomic orbital electron populations 1.23170 0.78022 1.04318 1.01831 1.86159 1.21409 1.25401 1.88760 1.17855 0.88497 0.85180 0.99916 1.21155 1.00150 0.90636 1.07891 1.19487 0.93079 0.92718 1.02353 1.17752 0.81820 0.88216 0.79306 1.90693 1.70994 1.28746 1.50037 1.42365 1.04962 1.07661 1.70614 1.17245 0.89423 0.85952 1.24024 1.24148 0.99672 0.89120 1.07583 1.78263 0.88103 1.17124 1.25688 1.44557 1.05579 1.01774 1.38981 1.19879 0.80122 0.92696 1.52854 0.86584 1.25652 0.99948 0.96015 0.95497 1.70219 1.30298 1.04019 1.34911 0.85812 0.80472 0.78891 0.78972 1.19631 1.20092 1.18782 1.21242 0.93581 0.88581 1.19996 1.20391 0.91632 0.97460 1.01375 1.18366 0.83253 0.91934 1.03070 1.18142 0.88886 0.85329 1.08816 1.86373 1.22153 1.27946 1.84365 1.23662 0.81135 1.00701 1.00205 1.23687 0.97215 0.84505 1.00294 1.86397 1.14215 1.36471 1.84213 0.92227 0.87950 0.92216 0.84075 0.77134 0.80583 0.91424 0.83672 0.82960 0.90385 0.85970 0.85861 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.48 10.24 -35.18 -0.36 -3.84 16 3 C 0.13 1.64 6.69 -39.18 -0.26 1.38 16 4 C -0.18 -2.17 8.52 -39.06 -0.33 -2.51 16 5 C -0.07 -1.07 5.87 -105.00 -0.62 -1.69 16 6 C 0.54 9.97 7.73 -12.45 -0.10 9.88 16 7 O -0.53 -11.59 13.48 5.27 0.07 -11.52 16 8 N -0.61 -11.06 5.41 -10.92 -0.06 -11.12 16 9 C -0.06 -1.40 6.90 -83.86 -0.58 -1.98 16 10 C -0.03 -0.78 10.85 -17.03 -0.18 -0.97 16 11 N -0.26 -7.60 10.42 30.80 0.32 -7.28 16 12 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 13 C -0.32 -8.50 10.24 -14.82 -0.15 -8.65 16 14 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 15 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 16 N -0.77 -21.44 11.84 55.49 0.66 -20.78 16 17 Si 0.93 18.83 29.56 -169.99 -5.02 13.80 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 22 C -0.09 -1.28 9.50 -39.00 -0.37 -1.65 16 23 C 0.08 1.03 6.48 -39.21 -0.25 0.78 16 24 C 0.03 0.44 6.52 -38.83 -0.25 0.19 16 25 O -0.29 -3.38 10.16 -44.84 -0.46 -3.84 16 26 C 0.02 0.13 7.26 37.40 0.27 0.40 16 27 C 0.02 0.13 7.26 37.40 0.27 0.40 16 28 O -0.30 -3.43 10.42 -33.05 -0.34 -3.77 16 29 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 32 H 0.14 1.36 4.61 -52.48 -0.24 1.12 16 33 H 0.39 5.43 6.85 -40.82 -0.28 5.15 16 34 H 0.18 4.63 5.91 -52.49 -0.31 4.32 16 35 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 37 H 0.15 2.26 7.64 -52.49 -0.40 1.86 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -35.93 352.42 -5.89 -41.81 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.11 Total: 9.41 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.85 Total: -4.29 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.88 Total: -43.09 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -1.09 Total: -22.96 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.93 -5.89 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.160 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds