Wall clock time and date at job start Wed Apr 1 2020 03:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36002 * 117.00096 * 2 1 4 4 C 1.38180 * 119.91061 * 0.02562 * 3 2 1 5 5 C 1.39693 * 119.90234 * 180.02562 * 4 3 2 6 6 C 1.47594 * 120.08179 * 180.02562 * 5 4 3 7 7 O 1.21614 * 119.99541 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00515 * 0.28219 * 6 5 4 9 9 C 1.40531 * 120.00490 * 179.72207 * 8 6 5 10 10 C 1.40666 * 126.07873 * 359.68579 * 9 8 6 11 11 N 1.30905 * 108.38313 * 179.81639 * 10 9 8 12 12 N 1.40070 * 108.41095 * 0.44378 * 11 10 9 13 13 C 1.37317 * 126.06427 * 179.68383 * 12 11 10 14 14 H 1.08000 * 119.99681 * 174.18165 * 13 12 11 15 15 C 1.38989 * 120.00465 * 354.17279 * 13 12 11 16 16 N 1.31291 * 119.99830 * 5.94947 * 15 13 12 17 17 Si 1.86802 * 120.00076 * 185.94428 * 15 13 12 18 18 H 1.48500 * 109.47120 * 94.98522 * 17 15 13 19 19 H 1.48505 * 109.46663 * 214.98437 * 17 15 13 20 20 H 1.48503 * 109.46914 * 334.98148 * 17 15 13 21 21 C 1.35695 * 126.08727 * 179.97438 * 9 8 6 22 22 C 1.39665 * 119.83115 * 0.30958 * 5 4 3 23 23 C 1.38380 * 120.05333 * 359.49353 * 22 5 4 24 24 C 1.39107 * 120.00178 * 0.39474 * 23 22 5 25 25 O 1.36066 * 120.72980 * 180.15565 * 24 23 22 26 26 C 1.43151 * 116.75147 * 342.68469 * 25 24 23 27 27 C 1.53476 * 108.25066 * 46.25746 * 26 25 24 28 28 O 1.36162 * 119.23626 * 180.02562 * 23 22 5 29 29 H 1.08991 * 109.46983 * 60.00105 * 1 2 3 30 30 H 1.09000 * 109.47101 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47227 * 299.99506 * 1 2 3 32 32 H 1.08004 * 120.04887 * 0.02951 * 4 3 2 33 33 H 0.97001 * 119.99788 * 359.71699 * 8 6 5 34 34 H 1.07999 * 125.80778 * 359.97438 * 10 9 8 35 35 H 0.96995 * 120.00128 * 180.02562 * 16 15 13 36 36 H 1.07997 * 126.24443 * 359.97438 * 21 9 8 37 37 H 1.07995 * 119.97285 * 179.71422 * 22 5 4 38 38 H 1.09003 * 109.70381 * 286.56873 * 26 25 24 39 39 H 1.08996 * 109.71092 * 165.95003 * 26 25 24 40 40 H 1.08994 * 109.71228 * 180.55024 * 27 26 25 41 41 H 1.08991 * 109.71252 * 59.91203 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2921 2.3695 0.0005 5 6 1.9265 3.6141 0.0000 6 6 1.1246 4.8532 0.0011 7 8 1.6786 5.9358 0.0002 8 7 -0.2213 4.7849 0.0084 9 6 -0.9848 5.9647 0.0154 10 6 -0.4804 7.2778 0.0219 11 7 -1.4920 8.1086 0.0233 12 7 -2.6773 7.3624 0.0281 13 6 -3.9528 7.8711 0.0369 14 1 -4.7996 7.2071 -0.0548 15 6 -4.1540 9.2405 0.1642 16 7 -3.1269 10.0582 0.1585 17 14 -5.8859 9.9173 0.3433 18 1 -6.2013 10.0953 1.7835 19 1 -5.9793 11.2275 -0.3495 20 1 -6.8536 8.9673 -0.2618 21 6 -2.3396 6.0399 0.0226 22 6 3.3215 3.6828 -0.0076 23 6 4.0726 2.5207 -0.0040 24 6 3.4385 1.2826 -0.0011 25 8 4.1625 0.1305 0.0056 26 6 5.5398 0.2329 -0.3711 27 6 6.1527 1.4298 0.3687 28 8 5.4315 2.6071 -0.0111 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2136 2.3122 0.0014 33 1 -0.6631 3.9213 0.0088 34 1 0.5638 7.5536 0.0228 35 1 -3.2673 11.0138 0.2477 36 1 -3.0255 5.2057 0.0237 37 1 3.8143 4.6438 -0.0127 38 1 5.6159 0.3877 -1.4474 39 1 6.0659 -0.6801 -0.0924 40 1 7.2014 1.5358 0.0910 41 1 6.0702 1.2783 1.4448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747438758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:12 Heat of formation + Delta-G solvation = -44.454060 kcal Electronic energy + Delta-G solvation = -29130.156599 eV Core-core repulsion = 24785.027436 eV Total energy + Delta-G solvation = -4345.129163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51457 -41.73019 -40.62278 -40.06095 -38.29994 -37.43345 -36.01497 -35.03484 -32.62006 -32.13602 -31.16209 -30.17452 -29.22548 -28.19290 -26.89713 -26.02437 -24.28046 -22.97293 -22.66616 -21.71062 -21.15304 -20.11834 -19.45811 -18.84750 -18.61459 -17.69063 -17.60748 -17.33984 -16.98899 -16.62743 -16.34556 -16.13940 -15.97835 -15.86876 -15.78119 -15.34354 -15.18853 -15.08860 -14.88713 -14.51500 -14.23998 -13.59366 -13.47736 -13.33848 -13.18470 -12.96850 -12.80405 -12.60096 -12.41554 -12.11673 -12.05477 -11.89204 -11.77042 -11.52799 -11.03791 -10.91733 -10.78707 -10.09740 -9.43677 -9.16252 -8.52915 -8.46537 -6.23469 -0.41726 0.11718 1.25590 1.41079 1.54943 1.59421 1.78231 1.86465 2.04150 2.07839 2.21879 2.34495 2.39881 2.74736 2.90493 3.09608 3.27804 3.56722 3.66610 3.79867 3.98196 4.03613 4.12858 4.17547 4.37253 4.44875 4.46278 4.51462 4.60793 4.62317 4.70723 4.80269 4.84555 4.99675 5.01866 5.10320 5.20960 5.29926 5.41562 5.72786 5.96564 6.06723 6.30428 6.39577 6.65829 6.73786 7.28680 7.47303 7.67800 8.53102 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.002207 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.099178 B =12681.524498 C =13796.381746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.315 6.315 3 C 0.129 3.871 4 C -0.164 4.164 5 C -0.086 4.086 6 C 0.545 3.455 7 O -0.569 6.569 8 N -0.604 5.604 9 C -0.047 4.047 10 C -0.058 4.058 11 N -0.311 5.311 12 N -0.167 5.167 13 C -0.353 4.353 14 H 0.143 0.857 15 C -0.008 4.008 16 N -0.825 5.825 17 Si 1.020 2.980 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.241 1.241 21 C -0.075 4.075 22 C -0.102 4.102 23 C 0.078 3.922 24 C 0.036 3.964 25 O -0.307 6.307 26 C 0.012 3.988 27 C 0.011 3.989 28 O -0.316 6.316 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.418 0.582 34 H 0.167 0.833 35 H 0.276 0.724 36 H 0.193 0.807 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.513 -24.860 -0.036 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.229 6.229 3 C 0.083 3.917 4 C -0.183 4.183 5 C -0.090 4.090 6 C 0.334 3.666 7 O -0.450 6.450 8 N -0.248 5.248 9 C -0.153 4.153 10 C -0.233 4.233 11 N -0.143 5.143 12 N 0.064 4.936 13 C -0.484 4.484 14 H 0.161 0.839 15 C -0.219 4.219 16 N -0.452 5.452 17 Si 0.838 3.162 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.164 1.164 21 C -0.226 4.226 22 C -0.122 4.122 23 C 0.033 3.967 24 C -0.010 4.010 25 O -0.221 6.221 26 C -0.062 4.062 27 C -0.063 4.063 28 O -0.230 6.230 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.257 0.743 34 H 0.184 0.816 35 H 0.086 0.914 36 H 0.210 0.790 37 H 0.154 0.846 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.738 -22.908 -0.036 25.300 hybrid contribution -0.240 -0.327 0.049 0.408 sum 10.498 -23.234 0.013 25.496 Atomic orbital electron populations 1.23532 0.75899 1.06268 1.02870 1.86163 1.23633 1.24622 1.88460 1.17938 0.88648 0.85683 0.99460 1.21264 1.01353 0.89340 1.06382 1.19086 0.92743 0.91899 1.05275 1.18334 0.81874 0.88908 0.77497 1.90675 1.71825 1.30836 1.51625 1.42216 1.04730 1.07225 1.70675 1.17293 0.89800 0.86399 1.21778 1.24185 0.99061 0.91015 1.09087 1.78161 0.89489 1.19172 1.27470 1.44857 1.05462 1.02986 1.40259 1.20642 0.80542 0.93851 1.53322 0.83938 1.26907 1.04716 0.96076 0.94220 1.70403 1.33377 1.04392 1.37077 0.84572 0.74596 0.78051 0.78943 1.19227 1.20299 1.16372 1.22010 0.94325 0.88537 1.17690 1.20334 0.91900 0.97586 1.02408 1.18260 0.84067 0.91523 1.02895 1.18317 0.89501 0.85602 1.07601 1.86356 1.24209 1.27370 1.84210 1.24049 0.79195 1.02392 1.00566 1.24091 0.98414 0.83085 1.00729 1.86376 1.13481 1.38950 1.84220 0.91128 0.85752 0.91139 0.81473 0.74342 0.81626 0.91405 0.79018 0.84556 0.89936 0.82312 0.82392 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.21 16 2 O -0.32 -6.36 10.24 -78.82 -0.81 -7.17 16 3 C 0.13 2.97 6.69 22.53 0.15 3.12 16 4 C -0.16 -3.68 8.52 22.61 0.19 -3.49 16 5 C -0.09 -2.53 5.87 -20.11 -0.12 -2.65 16 6 C 0.55 20.31 7.73 86.71 0.67 20.98 16 7 O -0.57 -26.32 13.48 -4.07 -0.05 -26.37 16 8 N -0.60 -21.19 5.41 -306.72 -1.66 -22.85 16 9 C -0.05 -2.15 6.90 37.75 0.26 -1.89 16 10 C -0.06 -3.23 10.85 85.42 0.93 -2.30 16 11 N -0.31 -18.93 10.42 -56.46 -0.59 -19.52 16 12 N -0.17 -9.23 3.74 -190.01 -0.71 -9.94 16 13 C -0.35 -18.49 10.24 84.01 0.86 -17.63 16 14 H 0.14 6.40 7.84 -2.91 -0.02 6.38 16 15 C -0.01 -0.39 5.50 84.95 0.47 0.07 16 16 N -0.82 -47.84 11.84 21.66 0.26 -47.59 16 17 Si 1.02 38.40 29.56 68.60 2.03 40.43 16 18 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.24 -8.09 7.11 99.48 0.71 -7.38 16 21 C -0.08 -3.42 11.49 83.38 0.96 -2.46 16 22 C -0.10 -3.03 9.50 22.65 0.22 -2.81 16 23 C 0.08 2.01 6.48 22.51 0.15 2.16 16 24 C 0.04 0.88 6.52 22.75 0.15 1.03 16 25 O -0.31 -6.38 10.16 -70.51 -0.72 -7.10 16 26 C 0.01 0.14 7.26 72.14 0.52 0.67 16 27 C 0.01 0.13 7.26 72.14 0.52 0.66 16 28 O -0.32 -7.01 10.42 -83.16 -0.87 -7.88 16 29 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 32 H 0.17 2.68 4.61 -2.91 -0.01 2.67 16 33 H 0.42 10.40 6.85 -92.71 -0.63 9.76 16 34 H 0.17 9.35 5.91 -2.91 -0.02 9.33 16 35 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.19 6.63 8.06 -2.91 -0.02 6.61 16 37 H 0.14 4.37 7.64 -2.91 -0.02 4.34 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.16 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -83.60 352.42 4.40 -79.20 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.48 Total: 32.10 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 7.04 Total: -3.34 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -2.70 Total: -99.89 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -2.44 Total: -48.51 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -83.60 4.40 -79.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.748 kcal (2) G-P(sol) polarization free energy of solvation -83.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds