Wall clock time and date at job start Wed Apr 1 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34749 * 117.00208 * 2 1 4 4 O 1.21515 * 120.00128 * 359.97438 * 3 2 1 5 5 C 1.47383 * 119.99903 * 179.97438 * 3 2 1 6 6 C 1.36669 * 125.77880 * 180.02562 * 5 3 2 7 7 N 1.34787 * 106.83334 * 179.73600 * 6 5 3 8 8 C 1.46497 * 126.58318 * 180.26015 * 7 6 5 9 9 C 1.53001 * 109.47206 * 125.00494 * 8 7 6 10 10 O 1.45195 * 109.47341 * 179.97438 * 9 8 7 11 11 C 1.34711 * 117.00034 * 179.97438 * 10 9 8 12 12 O 1.21461 * 119.99828 * 0.02562 * 11 10 9 13 13 C 1.47761 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.39970 * 120.03528 * 359.71884 * 13 11 10 15 15 C 1.38310 * 120.35653 * 179.74087 * 14 13 11 16 16 C 1.37760 * 120.41714 * 0.56487 * 15 14 13 17 17 C 1.40747 * 120.05250 * 359.69938 * 16 15 14 18 18 C 1.41439 * 120.17822 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99712 * 24.43967 * 18 17 16 20 20 C 1.39933 * 120.00118 * 204.43290 * 18 17 16 21 21 N 1.30832 * 119.99826 * 17.89107 * 20 18 17 22 22 Si 1.86795 * 120.00221 * 197.87884 * 20 18 17 23 23 H 1.48502 * 109.47230 * 60.00574 * 22 20 18 24 24 H 1.48505 * 109.47610 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47506 * 300.00750 * 22 20 18 26 26 C 1.39054 * 120.02827 * 180.02562 * 13 11 10 27 27 N 1.40203 * 106.82871 * 0.26324 * 7 6 5 28 28 N 1.28759 * 108.38478 * 0.02562 * 27 7 6 29 29 H 1.08999 * 109.47168 * 300.00718 * 1 2 3 30 30 H 1.09009 * 109.47062 * 59.99964 * 1 2 3 31 31 H 1.09000 * 109.47637 * 179.97438 * 1 2 3 32 32 H 1.07994 * 126.58641 * 359.97438 * 6 5 3 33 33 H 1.09002 * 109.47001 * 244.99715 * 8 7 6 34 34 H 1.08998 * 109.47494 * 4.99747 * 8 7 6 35 35 H 1.09002 * 109.46504 * 299.99525 * 9 8 7 36 36 H 1.08998 * 109.47505 * 59.99259 * 9 8 7 37 37 H 1.08000 * 119.81941 * 0.02562 * 14 13 11 38 38 H 1.08004 * 119.79244 * 180.28128 * 15 14 13 39 39 H 1.08000 * 119.97101 * 179.71578 * 16 15 14 40 40 H 0.96999 * 119.99785 * 180.02562 * 21 20 18 41 41 H 1.07990 * 120.20975 * 359.94949 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5356 1.2777 0.0006 6 6 4.2756 2.4267 0.0011 7 7 5.5716 2.0563 0.0075 8 6 6.7343 2.9475 0.0157 9 6 7.6359 2.5985 1.2015 10 8 8.7886 3.4814 1.2094 11 6 9.6872 3.3051 2.1974 12 8 9.5128 2.4374 3.0292 13 6 10.8850 4.1674 2.2692 14 6 11.0896 5.1637 1.3076 15 6 12.2057 5.9781 1.3714 16 6 13.1346 5.8109 2.3749 17 6 12.9490 4.8109 3.3478 18 6 13.9008 4.6373 4.3795 19 1 14.5331 5.4613 4.6750 20 6 14.0229 3.3978 5.0175 21 7 13.5336 2.3221 4.4561 22 14 14.8846 3.2791 6.6705 23 1 14.1720 4.1242 7.6622 24 1 14.8817 1.8669 7.1301 25 1 16.2857 3.7517 6.5335 26 6 11.8132 3.9856 3.2885 27 7 5.5931 0.6545 0.0046 28 7 4.3777 0.2296 -0.0036 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.8951 3.4374 0.0008 33 1 7.2920 2.8257 -0.9128 34 1 6.3994 3.9809 0.1056 35 1 7.0782 2.7203 2.1301 36 1 7.9708 1.5651 1.1117 37 1 10.3698 5.3002 0.5141 38 1 12.3523 6.7470 0.6272 39 1 14.0058 6.4479 2.4152 40 1 13.6179 1.4630 4.8985 41 1 11.6618 3.2156 4.0303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774576722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:01 Heat of formation + Delta-G solvation = -49.842081 kcal Electronic energy + Delta-G solvation = -27679.495465 eV Core-core repulsion = 23334.132660 eV Total energy + Delta-G solvation = -4345.362805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.68937 -40.47635 -40.00222 -37.57903 -36.83139 -36.37421 -35.16037 -33.84593 -31.75204 -30.84348 -30.01797 -29.59825 -28.08482 -25.59309 -24.98267 -24.30505 -23.02502 -22.17911 -21.13796 -21.07022 -20.06058 -18.60554 -17.92487 -17.42683 -17.13241 -16.86660 -16.65219 -16.16495 -16.13649 -15.78729 -15.07414 -15.05772 -14.77183 -14.40113 -14.11169 -13.78792 -13.56464 -13.42938 -12.99497 -12.82258 -12.69395 -12.45667 -12.32342 -12.12782 -11.77100 -11.59784 -11.27556 -11.18986 -11.18421 -11.12374 -10.87784 -10.86656 -10.61660 -10.51606 -10.35114 -9.84727 -9.81996 -9.64564 -9.31798 -7.86638 -7.66551 -6.91733 -4.53081 0.58498 1.13177 1.37204 1.82761 2.26923 2.60993 2.69777 2.95718 3.01414 3.02853 3.07685 3.44616 3.76934 3.83536 3.95197 4.25220 4.32230 4.42310 4.47769 4.70884 4.73347 4.81919 4.83243 5.07028 5.20962 5.21454 5.39394 5.44068 5.52091 5.85748 5.88230 6.01853 6.27050 6.47164 6.71823 6.83077 6.85878 7.07391 7.19564 7.20743 7.56071 7.57668 7.63331 7.80512 7.99744 8.32576 8.35055 8.66951 8.68925 10.03467 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.001749 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.381296 B =16003.217533 C =16918.051606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C 0.561 3.439 4 O -0.506 6.506 5 C -0.096 4.096 6 C 0.112 3.888 7 N -0.354 5.354 8 C 0.123 3.877 9 C 0.053 3.947 10 O -0.353 6.353 11 C 0.516 3.484 12 O -0.510 6.510 13 C -0.115 4.115 14 C -0.197 4.197 15 C -0.102 4.102 16 C -0.201 4.201 17 C 0.096 3.904 18 C -0.459 4.459 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.785 5.785 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.088 4.088 27 N -0.049 5.049 28 N -0.181 5.181 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.212 0.788 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.287 0.713 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 -0.090 -8.715 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.254 6.254 3 C 0.403 3.597 4 O -0.393 6.393 5 C -0.233 4.233 6 C -0.045 4.045 7 N -0.138 5.138 8 C 0.002 3.998 9 C -0.022 4.022 10 O -0.271 6.271 11 C 0.363 3.637 12 O -0.399 6.399 13 C -0.116 4.116 14 C -0.217 4.217 15 C -0.120 4.120 16 C -0.221 4.221 17 C 0.093 3.907 18 C -0.487 4.487 19 H 0.101 0.899 20 C -0.146 4.146 21 N -0.409 5.409 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.108 4.108 27 N -0.030 5.030 28 N -0.056 5.056 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.229 0.771 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.014 -1.558 -8.438 19.953 hybrid contribution -0.378 0.698 0.720 1.072 sum -18.392 -0.859 -7.718 19.964 Atomic orbital electron populations 1.23366 0.75514 1.04137 1.02749 1.86649 1.23632 1.31507 1.83654 1.19375 0.86056 0.81882 0.72354 1.90889 1.65678 1.35951 1.46758 1.20203 0.92645 0.89781 1.20668 1.23391 0.83321 1.01486 0.96291 1.50411 1.06308 1.08235 1.48828 1.21857 0.83904 0.92403 1.01626 1.22882 0.86349 0.95504 0.97509 1.86505 1.32022 1.56916 1.51624 1.21931 0.82135 0.82366 0.77263 1.90801 1.75857 1.33477 1.39747 1.18773 0.92926 0.98804 1.01119 1.20522 1.00426 0.99701 1.01003 1.20511 0.94840 0.98543 0.98123 1.21195 1.00003 1.03953 0.96984 1.17538 0.91239 0.90479 0.91408 1.19562 1.17104 0.96948 1.15104 0.89861 1.25982 0.94641 0.95139 0.98887 1.69760 1.34852 0.99785 1.36524 0.86288 0.80269 0.78244 0.81560 1.18662 1.20171 1.18848 1.21671 0.91551 1.00630 0.96899 1.82203 1.13338 0.85981 1.21486 1.74828 0.96625 1.25640 1.08458 0.91586 0.91625 0.87666 0.77113 0.86435 0.85980 0.90622 0.89519 0.87884 0.88453 0.88263 0.90220 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.34 -3.44 10.57 -40.62 -0.43 -3.87 16 3 C 0.56 6.07 7.96 34.45 0.27 6.35 16 4 O -0.51 -5.90 16.65 -19.28 -0.32 -6.22 16 5 C -0.10 -1.05 7.02 -83.57 -0.59 -1.63 16 6 C 0.11 0.92 11.27 -16.82 -0.19 0.73 16 7 N -0.35 -3.36 3.69 -61.05 -0.23 -3.59 16 8 C 0.12 0.98 6.92 -4.04 -0.03 0.95 16 9 C 0.05 0.67 5.68 37.16 0.21 0.88 16 10 O -0.35 -5.67 9.46 -40.52 -0.38 -6.05 16 11 C 0.52 10.73 7.90 34.62 0.27 11.01 16 12 O -0.51 -11.88 16.12 -19.24 -0.31 -12.19 16 13 C -0.11 -2.60 5.87 -105.05 -0.62 -3.22 16 14 C -0.20 -4.01 9.62 -38.91 -0.37 -4.38 16 15 C -0.10 -2.06 10.01 -39.73 -0.40 -2.46 16 16 C -0.20 -4.54 9.78 -38.81 -0.38 -4.92 16 17 C 0.10 2.42 5.57 -106.87 -0.60 1.82 16 18 C -0.46 -11.52 9.05 -37.73 -0.34 -11.86 16 19 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 20 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 21 N -0.79 -20.03 10.95 55.55 0.61 -19.42 16 22 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 C -0.09 -2.24 8.24 -38.42 -0.32 -2.55 16 27 N -0.05 -0.62 13.64 60.35 0.82 0.20 16 28 N -0.18 -2.35 12.39 32.83 0.41 -1.94 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.10 1.81 7.59 -52.49 -0.40 1.41 16 38 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.29 6.74 8.30 -40.82 -0.34 6.41 16 41 H 0.14 3.70 5.74 -52.49 -0.30 3.40 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -31.57 375.61 -5.76 -37.33 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.47 Total: 3.34 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.09 Total: -6.33 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 1.61 Total: -24.76 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.44 Total: -28.33 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.57 -5.76 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774576722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.512 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds