Wall clock time and date at job start Wed Apr 1 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34749 * 116.99911 * 2 1 4 4 O 1.21509 * 120.00123 * 359.97438 * 3 2 1 5 5 C 1.47385 * 119.99626 * 179.97438 * 3 2 1 6 6 C 1.36666 * 125.77979 * 179.97438 * 5 3 2 7 7 N 1.34785 * 106.83489 * 179.73924 * 6 5 3 8 8 C 1.46504 * 126.58495 * 180.26040 * 7 6 5 9 9 C 1.50700 * 109.47175 * 124.99777 * 8 7 6 10 10 O 1.20828 * 119.99567 * 0.02562 * 9 8 7 11 11 O 1.34224 * 120.00202 * 180.02562 * 9 8 7 12 12 C 1.45204 * 116.99937 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46805 * 179.97438 * 12 11 9 14 14 C 1.38634 * 119.75037 * 269.72634 * 13 12 11 15 15 C 1.37622 * 120.24920 * 179.72586 * 14 13 12 16 16 C 1.40719 * 119.74407 * 0.56706 * 15 14 13 17 17 C 1.41392 * 120.24585 * 179.68234 * 16 15 14 18 18 H 1.08000 * 120.00237 * 204.40234 * 17 16 15 19 19 C 1.39952 * 119.99857 * 24.40470 * 17 16 15 20 20 N 1.30821 * 119.99704 * 17.85585 * 19 17 16 21 21 Si 1.86800 * 119.99996 * 197.85715 * 19 17 16 22 22 H 1.48499 * 109.46986 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47068 * 119.99895 * 21 19 17 24 24 H 1.48492 * 109.47075 * 240.00197 * 21 19 17 25 25 C 1.40724 * 119.50877 * 359.70837 * 16 15 14 26 26 C 1.37618 * 119.74364 * 359.97438 * 25 16 15 27 27 N 1.40199 * 106.83197 * 0.26133 * 7 6 5 28 28 N 1.28769 * 108.38246 * 0.02562 * 27 7 6 29 29 H 1.09002 * 109.47028 * 300.00604 * 1 2 3 30 30 H 1.09000 * 109.46530 * 60.00109 * 1 2 3 31 31 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 32 32 H 1.08003 * 126.58630 * 359.97438 * 6 5 3 33 33 H 1.08997 * 109.47455 * 245.00375 * 8 7 6 34 34 H 1.08998 * 109.47270 * 5.00037 * 8 7 6 35 35 H 1.08998 * 109.47178 * 299.99702 * 12 11 9 36 36 H 1.08999 * 109.46841 * 60.00123 * 12 11 9 37 37 H 1.08000 * 119.87924 * 359.97438 * 14 13 12 38 38 H 1.07999 * 120.12679 * 180.27435 * 15 14 13 39 39 H 0.97002 * 119.99653 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.12155 * 179.97438 * 25 16 15 41 41 H 1.08001 * 119.87308 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5356 1.2777 0.0006 6 6 4.2756 2.4267 0.0001 7 7 5.5716 2.0564 0.0068 8 6 6.7343 2.9476 0.0143 9 6 7.6223 2.6049 1.1827 10 8 7.3156 1.7079 1.9319 11 8 8.7539 3.2961 1.3910 12 6 9.5605 2.9108 2.5353 13 6 10.7821 3.7903 2.6077 14 6 11.9449 3.4077 1.9571 15 6 13.0647 4.2058 2.0117 16 6 13.0299 5.4085 2.7415 17 6 14.1763 6.2332 2.8104 18 1 14.3038 6.9125 3.6402 19 6 15.1458 6.1693 1.8031 20 7 14.8530 5.6322 0.6467 21 14 16.8578 6.8507 2.1099 22 1 16.9325 7.3995 3.4877 23 1 17.8580 5.7641 1.9555 24 1 17.1438 7.9297 1.1306 25 6 11.8458 5.7839 3.4028 26 6 10.7361 4.9734 3.3289 27 7 5.5932 0.6545 0.0051 28 7 4.3777 0.2296 -0.0026 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.8951 3.4375 -0.0011 33 1 7.2920 2.8251 -0.9142 34 1 6.3995 3.9810 0.1033 35 1 8.9752 3.0255 3.4476 36 1 9.8680 1.8705 2.4292 37 1 11.9709 2.4817 1.4018 38 1 13.9681 3.9079 1.5004 39 1 15.5251 5.5875 -0.0514 40 1 11.8082 6.7046 3.9660 41 1 9.8261 5.2598 3.8353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786554235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:03 Heat of formation + Delta-G solvation = -64.636573 kcal Electronic energy + Delta-G solvation = -27576.165352 eV Core-core repulsion = 23230.161009 eV Total energy + Delta-G solvation = -4346.004343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.46873 -41.56956 -41.17102 -39.50381 -37.71011 -37.57061 -35.83774 -35.69628 -32.68472 -32.38419 -31.23744 -30.48350 -28.89920 -28.44250 -25.71521 -25.02497 -24.05099 -22.95627 -22.48423 -21.89761 -21.71989 -19.44213 -19.27417 -19.00568 -18.17787 -17.98830 -17.64321 -17.53233 -17.09342 -17.02330 -16.54332 -15.90881 -15.75255 -15.59981 -15.53612 -14.89545 -14.52032 -14.43500 -14.21148 -13.94715 -13.84676 -13.70516 -13.54346 -13.30983 -12.93307 -12.86188 -12.70879 -12.62419 -12.48669 -12.14271 -12.03947 -11.89675 -11.82500 -11.74193 -11.59957 -11.38431 -11.29217 -11.04759 -10.56860 -9.44097 -9.33669 -8.69762 -6.40179 -0.13540 0.31016 0.58327 0.83341 1.00075 1.11770 1.38770 1.42823 1.54158 1.61691 1.80977 1.86159 2.19233 2.68704 3.04860 3.35889 3.50943 3.71486 3.74858 3.78693 4.03780 4.06417 4.09786 4.24611 4.29661 4.37286 4.46746 4.48261 4.49629 4.55407 4.74661 5.01570 5.11768 5.12159 5.18692 5.30182 5.37497 5.40916 5.64958 5.87975 6.05838 6.13885 6.32000 6.46060 6.56699 6.64556 6.81360 6.88366 6.96847 8.26800 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.001543 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.483355 B =18146.753460 C =18216.838821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.563 3.437 4 O -0.518 6.518 5 C -0.119 4.119 6 C 0.139 3.861 7 N -0.352 5.352 8 C 0.132 3.868 9 C 0.444 3.556 10 O -0.529 6.529 11 O -0.349 6.349 12 C 0.145 3.855 13 C -0.232 4.232 14 C -0.079 4.079 15 C -0.194 4.194 16 C 0.087 3.913 17 C -0.492 4.492 18 H 0.079 0.921 19 C 0.037 3.963 20 N -0.816 5.816 21 Si 0.982 3.018 22 H -0.257 1.257 23 H -0.265 1.265 24 H -0.265 1.265 25 C -0.245 4.245 26 C -0.062 4.062 27 N -0.069 5.069 28 N -0.210 5.210 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.260 0.740 33 H 0.174 0.826 34 H 0.205 0.795 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.291 0.709 40 H 0.103 0.897 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.504 -3.427 -5.066 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.407 3.593 4 O -0.406 6.406 5 C -0.255 4.255 6 C -0.017 4.017 7 N -0.136 5.136 8 C 0.011 3.989 9 C 0.286 3.714 10 O -0.418 6.418 11 O -0.265 6.265 12 C 0.073 3.927 13 C -0.233 4.233 14 C -0.098 4.098 15 C -0.213 4.213 16 C 0.085 3.915 17 C -0.521 4.521 18 H 0.097 0.903 19 C -0.180 4.180 20 N -0.441 5.441 21 Si 0.802 3.198 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.189 1.189 25 C -0.265 4.265 26 C -0.080 4.080 27 N -0.050 5.050 28 N -0.085 5.085 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.276 0.724 33 H 0.191 0.809 34 H 0.222 0.778 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.775 -4.669 -5.045 20.936 hybrid contribution 0.351 0.889 0.238 0.985 sum -19.425 -3.780 -4.808 20.365 Atomic orbital electron populations 1.23673 0.73544 1.06000 1.03200 1.86639 1.25712 1.31395 1.83370 1.19379 0.86060 0.81931 0.71972 1.90865 1.65907 1.36165 1.47685 1.20523 0.92857 0.90439 1.21694 1.24064 0.81843 1.02565 0.93219 1.50188 1.06921 1.07466 1.49027 1.21907 0.83294 0.95762 0.97912 1.23985 0.81369 0.79658 0.86378 1.90767 1.72994 1.30569 1.47479 1.86647 1.32592 1.57926 1.49334 1.21572 0.88376 0.97127 0.85624 1.18956 0.93999 1.00277 1.10061 1.20780 0.93281 0.98321 0.97394 1.21259 0.98394 0.95690 1.05996 1.18056 0.92468 0.91353 0.89631 1.19963 1.03949 1.20599 1.07539 0.90269 1.26784 1.04147 0.93727 0.93296 1.69867 1.36603 1.34260 1.03409 0.85156 0.76082 0.78724 0.79796 1.18095 1.18961 1.18925 1.21183 0.93931 1.01450 1.09895 1.20710 0.97255 0.93006 0.97045 1.82221 1.13214 0.87758 1.21789 1.74797 0.97211 1.27075 1.09417 0.91296 0.90991 0.85215 0.72394 0.80907 0.77846 0.90710 0.91567 0.87618 0.87928 0.89858 0.87931 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.52 16 2 O -0.36 -7.19 10.57 -56.60 -0.60 -7.79 16 3 C 0.56 11.96 7.96 70.23 0.56 12.52 16 4 O -0.52 -11.43 16.65 19.81 0.33 -11.10 16 5 C -0.12 -2.55 7.02 40.79 0.29 -2.26 16 6 C 0.14 1.94 11.27 83.87 0.95 2.89 16 7 N -0.35 -6.21 3.41 -350.79 -1.20 -7.41 16 8 C 0.13 1.53 7.13 85.63 0.61 2.14 16 9 C 0.44 10.61 7.99 71.24 0.57 11.17 16 10 O -0.53 -16.98 15.48 21.96 0.34 -16.64 16 11 O -0.35 -9.96 10.20 -51.36 -0.52 -10.48 16 12 C 0.15 4.76 5.58 71.24 0.40 5.15 16 13 C -0.23 -9.26 5.54 -19.68 -0.11 -9.36 16 14 C -0.08 -3.50 9.67 22.22 0.21 -3.28 16 15 C -0.19 -9.79 8.70 22.73 0.20 -9.59 16 16 C 0.09 4.52 5.58 -21.29 -0.12 4.41 16 17 C -0.49 -25.38 9.05 23.46 0.21 -25.17 16 18 H 0.08 3.94 7.91 -2.91 -0.02 3.91 16 19 C 0.04 1.76 5.14 85.26 0.44 2.20 16 20 N -0.82 -40.77 10.95 21.83 0.24 -40.53 16 21 Si 0.98 36.30 29.60 68.60 2.03 38.33 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 25 C -0.25 -11.35 9.80 22.73 0.22 -11.13 16 26 C -0.06 -2.51 9.67 22.22 0.21 -2.30 16 27 N -0.07 -1.87 12.89 37.02 0.48 -1.40 16 28 N -0.21 -5.77 12.39 -50.03 -0.62 -6.39 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.26 0.82 8.06 -2.91 -0.02 0.79 16 33 H 0.17 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.20 0.19 8.08 -2.39 -0.02 0.17 16 35 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 36 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 37 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 38 H 0.10 5.44 6.16 -2.91 -0.02 5.42 16 39 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 40 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -75.00 375.50 7.40 -67.60 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.08 Total: 16.90 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 5.84 Total: -21.09 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -1.10 Total: -55.72 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.45 Total: -46.02 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -75.00 7.40 -67.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786554235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.962 kcal (2) G-P(sol) polarization free energy of solvation -74.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds