Wall clock time and date at job start Wed Apr 1 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.47433 * 2 1 4 4 C 1.34821 * 117.00101 * 179.97438 * 3 2 1 5 5 O 1.21544 * 120.00239 * 0.02562 * 4 3 2 6 6 C 1.47158 * 119.99954 * 180.02562 * 4 3 2 7 7 N 1.31780 * 125.78086 * 0.31254 * 6 4 3 8 8 C 1.33295 * 109.21905 * 180.17069 * 7 6 4 9 9 N 1.40241 * 125.88271 * 179.82968 * 8 7 6 10 10 C 1.34777 * 120.00368 * 179.69235 * 9 8 7 11 11 O 1.21618 * 119.99856 * 359.97438 * 10 9 8 12 12 C 1.47512 * 120.00290 * 179.97438 * 10 9 8 13 13 C 1.39672 * 120.19693 * 0.02562 * 12 10 9 14 14 C 1.37825 * 119.91888 * 180.29432 * 13 12 10 15 15 C 1.38578 * 120.32445 * 359.44561 * 14 13 12 16 16 C 1.38034 * 120.39922 * 0.55627 * 15 14 13 17 17 C 1.38827 * 120.07172 * 359.72213 * 16 15 14 18 18 O 1.35525 * 120.16062 * 180.02562 * 17 16 15 19 19 C 1.34816 * 116.99664 * 354.40004 * 18 17 16 20 20 H 1.08003 * 120.00187 * 5.04851 * 19 18 17 21 21 C 1.38697 * 119.99752 * 185.05322 * 19 18 17 22 22 N 1.31518 * 119.99839 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00023 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46930 * 90.00402 * 23 21 19 25 25 H 1.48505 * 109.47273 * 209.99785 * 23 21 19 26 26 H 1.48496 * 109.47265 * 330.00389 * 23 21 19 27 27 C 1.36279 * 108.24159 * 359.56443 * 8 7 6 28 28 N 1.36062 * 106.99067 * 0.26127 * 27 8 7 29 29 H 0.97006 * 126.44778 * 180.02562 * 28 27 8 30 30 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46265 * 299.99580 * 1 2 3 32 32 H 1.08997 * 109.47401 * 59.99501 * 1 2 3 33 33 H 1.09007 * 109.46964 * 240.00409 * 2 1 3 34 34 H 1.08997 * 109.47401 * 120.00499 * 2 1 3 35 35 H 0.97004 * 120.00077 * 359.68892 * 9 8 7 36 36 H 1.08001 * 120.04202 * 0.02562 * 13 12 10 37 37 H 1.07998 * 119.84097 * 179.71975 * 14 13 12 38 38 H 1.07992 * 119.80073 * 180.27975 * 15 14 13 39 39 H 1.08000 * 119.95954 * 179.74562 * 16 15 14 40 40 H 0.97003 * 119.99812 * 180.02562 * 22 21 19 41 41 H 1.07997 * 126.50754 * 180.29973 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3507 1.5456 0.0005 5 8 4.0911 0.5817 0.0005 6 6 3.9132 2.9054 0.0011 7 7 3.2199 4.0260 0.0071 8 6 4.0593 5.0614 0.0018 9 7 3.6944 6.4155 0.0022 10 6 4.6459 7.3700 0.0028 11 8 5.8211 7.0570 0.0035 12 6 4.2620 8.7943 0.0026 13 6 2.9136 9.1584 0.0023 14 6 2.5614 10.4909 -0.0040 15 6 3.5390 11.4730 0.0015 16 6 4.8756 11.1282 0.0017 17 6 5.2490 9.7911 0.0023 18 8 6.5608 9.4504 0.0031 19 6 7.4536 10.4537 -0.1139 20 1 7.1156 11.4795 -0.1207 21 6 8.8064 10.1686 -0.2257 22 7 9.6774 11.1473 -0.3404 23 14 9.3911 8.3946 -0.2134 24 1 9.4202 7.8733 -1.6037 25 1 10.7555 8.3271 0.3691 26 1 8.4627 7.5730 0.6040 27 6 5.3333 4.5777 0.0021 28 7 5.2431 3.2200 0.0017 29 1 5.9835 2.5933 0.0021 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.7570 6.6652 0.0020 36 1 2.1479 8.3968 0.0027 37 1 1.5184 10.7710 -0.0088 38 1 3.2535 12.5145 0.0010 39 1 5.6316 11.8994 0.0019 40 1 10.6234 10.9479 -0.4190 41 1 6.2422 5.1611 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793963877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:54 Heat of formation + Delta-G solvation = -44.777268 kcal Electronic energy + Delta-G solvation = -28874.421915 eV Core-core repulsion = 24529.278736 eV Total energy + Delta-G solvation = -4345.143179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.46130 -40.47856 -39.88136 -38.43399 -36.96274 -36.63850 -34.60914 -32.64786 -32.53767 -32.00460 -30.93138 -29.32121 -29.02936 -25.46441 -25.00424 -23.89929 -23.03384 -22.07143 -21.28954 -20.92808 -19.84250 -19.06956 -18.23937 -17.98369 -17.48882 -17.02420 -16.67846 -16.16785 -15.65390 -15.61647 -14.82575 -14.65227 -14.44827 -14.23418 -14.14332 -13.95855 -13.82304 -13.78775 -13.57783 -13.16044 -13.01918 -12.45876 -12.33544 -12.26631 -11.98260 -11.55325 -11.36233 -11.21522 -11.11911 -10.92766 -10.90771 -10.80652 -10.55427 -10.15305 -9.82927 -9.75299 -9.28427 -8.97617 -8.53370 -7.96626 -7.56092 -6.55363 -4.20391 0.86531 1.39382 1.82603 2.10984 2.29579 2.79305 2.91339 3.23888 3.29255 3.35080 3.54216 3.54806 4.12333 4.25078 4.41540 4.55596 4.58065 4.62137 4.70402 4.87847 5.00601 5.11617 5.28429 5.29386 5.41047 5.45091 5.56679 5.57993 5.61845 5.77795 5.86785 5.95398 5.96971 6.27738 6.44566 6.71132 6.78446 6.82709 6.94595 7.06749 7.17207 7.38775 7.41562 7.61693 7.85981 7.93245 8.54419 8.79282 9.40706 10.49629 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002767 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.465759 B =10118.378835 C =12168.598494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.329 6.329 4 C 0.570 3.430 5 O -0.511 6.511 6 C 0.151 3.849 7 N -0.432 5.432 8 C 0.238 3.762 9 N -0.641 5.641 10 C 0.570 3.430 11 O -0.507 6.507 12 C -0.226 4.226 13 C -0.038 4.038 14 C -0.218 4.218 15 C -0.047 4.047 16 C -0.225 4.225 17 C 0.204 3.796 18 O -0.164 6.164 19 C -0.396 4.396 20 H 0.109 0.891 21 C 0.071 3.929 22 N -0.866 5.866 23 Si 0.901 3.099 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.239 1.239 27 C -0.008 4.008 28 N -0.517 5.517 29 H 0.434 0.566 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.283 0.717 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.665 -15.438 0.674 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.243 6.243 4 C 0.413 3.587 5 O -0.398 6.398 6 C -0.105 4.105 7 N -0.162 5.162 8 C 0.011 3.989 9 N -0.290 5.290 10 C 0.362 3.638 11 O -0.382 6.382 12 C -0.231 4.231 13 C -0.056 4.056 14 C -0.237 4.237 15 C -0.066 4.066 16 C -0.244 4.244 17 C 0.146 3.854 18 O -0.064 6.064 19 C -0.471 4.471 20 H 0.127 0.873 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.726 3.274 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.162 1.162 27 C -0.149 4.149 28 N -0.124 5.124 29 H 0.274 0.726 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.093 0.907 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.121 -16.093 0.682 22.093 hybrid contribution 1.052 -0.702 -0.057 1.266 sum -14.068 -16.795 0.626 21.918 Atomic orbital electron populations 1.21812 0.92107 1.03049 1.04004 1.23170 0.95751 0.79362 1.02865 1.86658 1.21759 1.32514 1.83384 1.18841 0.81454 0.85705 0.72746 1.90913 1.60667 1.41121 1.47115 1.20549 0.81149 0.92071 1.16739 1.69903 1.32570 0.95919 1.17779 1.17553 0.89102 0.85360 1.06863 1.42759 1.11216 1.00613 1.74395 1.18250 0.84603 0.85129 0.75824 1.90699 1.17522 1.81805 1.48220 1.18508 0.92719 0.89735 1.22180 1.20807 0.93157 0.96388 0.95288 1.20564 0.98731 0.92533 1.11911 1.21012 0.92456 0.98788 0.94295 1.21292 0.96921 0.95992 1.10200 1.18950 0.84216 0.91522 0.90695 1.83751 1.11118 1.36096 1.75440 1.20932 0.86749 0.87769 1.51616 0.87334 1.24515 0.94355 1.00034 0.94577 1.69635 1.03000 1.32368 1.45152 0.86189 0.77840 0.83445 0.79946 1.19881 1.21243 1.16164 1.23845 1.01631 0.81309 1.08158 1.42993 1.07823 1.08253 1.53305 0.72583 0.90020 0.91176 0.91178 0.90889 0.90889 0.75012 0.86549 0.86745 0.86659 0.84262 0.90731 0.76393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.29 37.16 0.38 -0.47 16 2 C 0.06 0.49 6.20 37.16 0.23 0.72 16 3 O -0.33 -3.78 10.22 -40.82 -0.42 -4.20 16 4 C 0.57 7.27 7.95 34.35 0.27 7.55 16 5 O -0.51 -6.87 16.89 -19.30 -0.33 -7.20 16 6 C 0.15 2.09 7.96 -154.50 -1.23 0.86 16 7 N -0.43 -6.56 11.26 -10.28 -0.12 -6.68 16 8 C 0.24 3.76 7.98 -154.07 -1.23 2.53 16 9 N -0.64 -9.90 5.40 -12.60 -0.07 -9.97 16 10 C 0.57 10.76 7.73 -12.48 -0.10 10.66 16 11 O -0.51 -11.15 12.29 -16.59 -0.20 -11.35 16 12 C -0.23 -4.28 5.89 -104.82 -0.62 -4.90 16 13 C -0.04 -0.56 9.53 -39.20 -0.37 -0.94 16 14 C -0.22 -3.16 10.02 -39.61 -0.40 -3.56 16 15 C -0.05 -0.75 10.03 -39.53 -0.40 -1.15 16 16 C -0.23 -4.46 9.16 -39.44 -0.36 -4.82 16 17 C 0.20 4.51 6.66 -38.60 -0.26 4.26 16 18 O -0.16 -4.23 6.67 -21.08 -0.14 -4.37 16 19 C -0.40 -10.76 9.95 30.90 0.31 -10.45 16 20 H 0.11 2.95 5.44 -52.48 -0.29 2.67 16 21 C 0.07 1.96 5.49 -17.52 -0.10 1.86 16 22 N -0.87 -24.30 13.96 55.48 0.77 -23.52 16 23 Si 0.90 21.82 28.62 -169.99 -4.86 16.95 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.93 7.11 56.52 0.40 -5.52 16 27 C -0.01 -0.13 10.85 -16.38 -0.18 -0.31 16 28 N -0.52 -6.44 6.17 -10.50 -0.06 -6.50 16 29 H 0.43 4.10 8.96 -40.82 -0.37 3.73 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 5.21 6.85 -40.82 -0.28 4.93 16 36 H 0.12 1.31 6.40 -52.49 -0.34 0.97 16 37 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.14 2.87 5.64 -52.49 -0.30 2.58 16 40 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.22 3.55 5.84 -52.49 -0.31 3.24 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -32.39 362.75 -7.96 -40.36 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -3.96 Total: 9.15 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -4.04 Total: 1.86 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.53 Total: -46.67 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.09 Total: -27.12 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.39 -7.96 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793963877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.421 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds