Wall clock time and date at job start Wed Apr 1 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.47433 * 2 1 4 4 C 1.34821 * 117.00101 * 179.97438 * 3 2 1 5 5 O 1.21544 * 120.00239 * 0.02562 * 4 3 2 6 6 C 1.47158 * 119.99954 * 180.02562 * 4 3 2 7 7 N 1.31780 * 125.78086 * 0.31254 * 6 4 3 8 8 C 1.33295 * 109.21905 * 180.17069 * 7 6 4 9 9 N 1.40241 * 125.88271 * 179.82968 * 8 7 6 10 10 C 1.34777 * 120.00368 * 179.69235 * 9 8 7 11 11 O 1.21618 * 119.99856 * 359.97438 * 10 9 8 12 12 C 1.47512 * 120.00290 * 179.97438 * 10 9 8 13 13 C 1.39672 * 120.19693 * 0.02562 * 12 10 9 14 14 C 1.37825 * 119.91888 * 180.29432 * 13 12 10 15 15 C 1.38578 * 120.32445 * 359.44561 * 14 13 12 16 16 C 1.38034 * 120.39922 * 0.55627 * 15 14 13 17 17 C 1.38827 * 120.07172 * 359.72213 * 16 15 14 18 18 O 1.35525 * 120.16062 * 180.02562 * 17 16 15 19 19 C 1.34816 * 116.99664 * 354.40004 * 18 17 16 20 20 H 1.08003 * 120.00187 * 5.04851 * 19 18 17 21 21 C 1.38697 * 119.99752 * 185.05322 * 19 18 17 22 22 N 1.31518 * 119.99839 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00023 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46930 * 90.00402 * 23 21 19 25 25 H 1.48505 * 109.47273 * 209.99785 * 23 21 19 26 26 H 1.48496 * 109.47265 * 330.00389 * 23 21 19 27 27 C 1.36279 * 108.24159 * 359.56443 * 8 7 6 28 28 N 1.36062 * 106.99067 * 0.26127 * 27 8 7 29 29 H 0.97006 * 126.44778 * 180.02562 * 28 27 8 30 30 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46265 * 299.99580 * 1 2 3 32 32 H 1.08997 * 109.47401 * 59.99501 * 1 2 3 33 33 H 1.09007 * 109.46964 * 240.00409 * 2 1 3 34 34 H 1.08997 * 109.47401 * 120.00499 * 2 1 3 35 35 H 0.97004 * 120.00077 * 359.68892 * 9 8 7 36 36 H 1.08001 * 120.04202 * 0.02562 * 13 12 10 37 37 H 1.07998 * 119.84097 * 179.71975 * 14 13 12 38 38 H 1.07992 * 119.80073 * 180.27975 * 15 14 13 39 39 H 1.08000 * 119.95954 * 179.74562 * 16 15 14 40 40 H 0.97003 * 119.99812 * 180.02562 * 22 21 19 41 41 H 1.07997 * 126.50754 * 180.29973 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3507 1.5456 0.0005 5 8 4.0911 0.5817 0.0005 6 6 3.9132 2.9054 0.0011 7 7 3.2199 4.0260 0.0071 8 6 4.0593 5.0614 0.0018 9 7 3.6944 6.4155 0.0022 10 6 4.6459 7.3700 0.0028 11 8 5.8211 7.0570 0.0035 12 6 4.2620 8.7943 0.0026 13 6 2.9136 9.1584 0.0023 14 6 2.5614 10.4909 -0.0040 15 6 3.5390 11.4730 0.0015 16 6 4.8756 11.1282 0.0017 17 6 5.2490 9.7911 0.0023 18 8 6.5608 9.4504 0.0031 19 6 7.4536 10.4537 -0.1139 20 1 7.1156 11.4795 -0.1207 21 6 8.8064 10.1686 -0.2257 22 7 9.6774 11.1473 -0.3404 23 14 9.3911 8.3946 -0.2134 24 1 9.4202 7.8733 -1.6037 25 1 10.7555 8.3271 0.3691 26 1 8.4627 7.5730 0.6040 27 6 5.3333 4.5777 0.0021 28 7 5.2431 3.2200 0.0017 29 1 5.9835 2.5933 0.0021 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.7570 6.6652 0.0020 36 1 2.1479 8.3968 0.0027 37 1 1.5184 10.7710 -0.0088 38 1 3.2535 12.5145 0.0010 39 1 5.6316 11.8994 0.0019 40 1 10.6234 10.9479 -0.4190 41 1 6.2422 5.1611 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793963877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:53 Heat of formation + Delta-G solvation = -65.032684 kcal Electronic energy + Delta-G solvation = -28875.300255 eV Core-core repulsion = 24529.278736 eV Total energy + Delta-G solvation = -4346.021519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.60187 -41.56608 -41.25497 -39.97241 -38.16960 -37.88379 -35.96982 -34.49359 -33.73944 -32.76559 -32.22536 -30.79656 -30.21209 -27.31218 -26.01290 -25.27153 -23.76436 -23.47937 -22.56480 -22.07871 -21.21588 -20.21203 -19.77653 -19.51666 -18.67049 -18.08252 -17.91622 -17.43074 -16.87876 -16.75049 -16.45759 -16.02264 -15.83499 -15.73285 -15.42590 -15.32883 -15.15525 -14.90528 -14.67260 -14.52541 -14.22104 -14.01740 -13.63463 -13.13540 -13.01724 -12.81771 -12.59096 -12.54423 -12.38370 -12.36891 -12.20152 -11.98486 -11.73156 -11.59145 -11.52024 -11.02927 -10.93857 -10.84958 -9.93942 -9.25713 -9.06599 -8.54588 -6.24034 -0.19771 -0.02558 0.66797 0.88052 1.10969 1.29818 1.34594 1.55414 1.60681 1.72871 2.20296 2.31504 2.33628 2.78776 3.00089 3.11277 3.17229 3.56468 3.87633 4.01706 4.01987 4.03810 4.25337 4.27884 4.33931 4.43091 4.50152 4.55603 4.62880 4.77314 4.80771 4.94475 5.02181 5.06063 5.29919 5.32470 5.49481 5.54256 5.60223 5.70378 5.77254 5.85849 6.11163 6.16262 6.38300 6.72536 6.81640 7.14750 7.58255 8.55382 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002767 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.465759 B =10118.378835 C =12168.598494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.336 6.336 4 C 0.574 3.426 5 O -0.518 6.518 6 C 0.155 3.845 7 N -0.439 5.439 8 C 0.220 3.780 9 N -0.621 5.621 10 C 0.567 3.433 11 O -0.543 6.543 12 C -0.228 4.228 13 C -0.029 4.029 14 C -0.188 4.188 15 C -0.038 4.038 16 C -0.250 4.250 17 C 0.169 3.831 18 O -0.204 6.204 19 C -0.401 4.401 20 H 0.091 0.909 21 C 0.022 3.978 22 N -0.913 5.913 23 Si 0.957 3.043 24 H -0.275 1.275 25 H -0.273 1.273 26 H -0.254 1.254 27 C -0.015 4.015 28 N -0.501 5.501 29 H 0.447 0.553 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.427 0.573 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.285 0.715 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.147 -17.230 0.746 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.250 6.250 4 C 0.417 3.583 5 O -0.407 6.407 6 C -0.102 4.102 7 N -0.168 5.168 8 C -0.006 4.006 9 N -0.271 5.271 10 C 0.359 3.641 11 O -0.421 6.421 12 C -0.233 4.233 13 C -0.048 4.048 14 C -0.207 4.207 15 C -0.056 4.056 16 C -0.269 4.269 17 C 0.116 3.884 18 O -0.108 6.108 19 C -0.477 4.477 20 H 0.109 0.891 21 C -0.178 4.178 22 N -0.552 5.552 23 Si 0.781 3.219 24 H -0.201 1.201 25 H -0.198 1.198 26 H -0.177 1.177 27 C -0.157 4.157 28 N -0.109 5.109 29 H 0.290 0.710 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.268 0.732 36 H 0.182 0.818 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -19.689 -17.911 0.758 26.628 hybrid contribution 1.866 -0.248 -0.068 1.883 sum -17.823 -18.159 0.690 25.454 Atomic orbital electron populations 1.21851 0.90192 1.04621 1.03800 1.23547 0.97222 0.77727 1.03517 1.86658 1.20701 1.34817 1.82828 1.18685 0.81997 0.85000 0.72603 1.90911 1.61041 1.41163 1.47573 1.20864 0.81393 0.92437 1.15554 1.69883 1.32656 0.95947 1.18322 1.17669 0.89503 0.85514 1.07916 1.42417 1.11328 1.00166 1.73178 1.18333 0.84542 0.85690 0.75529 1.90705 1.19262 1.82369 1.49728 1.18879 0.93904 0.89298 1.21174 1.21380 0.92055 0.98281 0.93039 1.21229 1.00781 0.91568 1.07077 1.21475 0.90764 1.01405 0.91943 1.21335 0.98685 0.94756 1.12108 1.19643 0.83847 0.93480 0.91466 1.83736 1.12320 1.35249 1.79480 1.20865 0.87505 0.87725 1.51573 0.89134 1.25117 0.94651 1.02828 0.95233 1.69695 1.03251 1.33497 1.48792 0.85375 0.77445 0.79765 0.79353 1.20066 1.19791 1.17739 1.23617 1.01172 0.82230 1.08655 1.42888 1.08128 1.07647 1.52242 0.70964 0.87535 0.91352 0.91362 0.90269 0.90261 0.73250 0.81801 0.81607 0.83116 0.86517 0.90553 0.77719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 71.98 0.74 -0.51 16 2 C 0.05 0.71 6.20 71.98 0.45 1.16 16 3 O -0.34 -7.04 10.22 -57.33 -0.59 -7.62 16 4 C 0.57 13.64 7.95 70.16 0.56 14.19 16 5 O -0.52 -13.04 16.89 19.69 0.33 -12.70 16 6 C 0.16 4.04 7.96 136.16 1.08 5.13 16 7 N -0.44 -12.51 11.26 -186.45 -2.10 -14.61 16 8 C 0.22 6.68 7.98 131.70 1.05 7.73 16 9 N -0.62 -17.99 5.40 -312.04 -1.69 -19.67 16 10 C 0.57 21.09 7.73 86.69 0.67 21.76 16 11 O -0.54 -24.52 12.29 16.81 0.21 -24.32 16 12 C -0.23 -8.29 5.89 -19.99 -0.12 -8.41 16 13 C -0.03 -0.73 9.53 22.52 0.21 -0.52 16 14 C -0.19 -4.32 10.02 22.25 0.22 -4.10 16 15 C -0.04 -1.07 10.03 22.30 0.22 -0.85 16 16 C -0.25 -9.98 9.16 22.36 0.20 -9.78 16 17 C 0.17 7.65 6.66 22.91 0.15 7.80 16 18 O -0.20 -11.10 6.67 0.77 0.01 -11.09 16 19 C -0.40 -23.34 9.95 67.93 0.68 -22.67 16 20 H 0.09 5.37 5.44 -2.91 -0.02 5.36 16 21 C 0.02 1.28 5.49 84.85 0.47 1.74 16 22 N -0.91 -54.37 13.96 21.62 0.30 -54.07 16 23 Si 0.96 47.83 28.62 68.60 1.96 49.80 16 24 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.25 -13.11 7.11 99.48 0.71 -12.40 16 27 C -0.01 -0.44 10.85 83.58 0.91 0.46 16 28 N -0.50 -11.99 6.17 -187.13 -1.15 -13.14 16 29 H 0.45 7.99 8.96 -92.70 -0.83 7.15 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.43 9.26 6.85 -92.71 -0.64 8.63 16 36 H 0.16 2.59 6.40 -2.91 -0.02 2.57 16 37 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 40 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.21 6.88 5.84 -2.91 -0.02 6.86 16 Total: -1.00 -76.36 362.75 4.46 -71.91 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.33 Total: 22.40 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 7.50 Total: 13.14 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -4.64 Total: -101.50 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.04 Total: -55.74 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.96 Total: 49.80 kcal Total: -76.36 4.46 -71.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793963877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.874 kcal (2) G-P(sol) polarization free energy of solvation -76.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds