Wall clock time and date at job start Wed Apr 1 2020 03:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35834 * 126.07293 * 2 1 4 4 C 1.35625 * 107.57619 * 180.02562 * 3 2 1 5 5 O 1.36200 * 126.05607 * 179.97438 * 4 3 2 6 6 C 1.35594 * 117.99734 * 185.24367 * 5 4 3 7 7 C 1.38753 * 120.15965 * 266.86990 * 6 5 4 8 8 C 1.38033 * 120.09222 * 180.02562 * 7 6 5 9 9 C 1.38586 * 120.40178 * 359.95852 * 8 7 6 10 10 C 1.37763 * 120.32064 * 359.97438 * 9 8 7 11 11 C 1.39772 * 119.90412 * 0.27533 * 10 9 8 12 12 C 1.47375 * 120.19717 * 179.72101 * 11 10 9 13 13 O 1.21520 * 119.99884 * 179.97438 * 12 11 10 14 14 O 1.34753 * 120.00355 * 0.02562 * 12 11 10 15 15 C 1.45198 * 117.00287 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47283 * 179.97438 * 15 14 12 17 17 O 1.21291 * 119.99885 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99658 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99547 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00019 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99971 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00070 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00271 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47268 * 89.99485 * 23 21 19 25 25 H 1.48500 * 109.47192 * 210.00025 * 23 21 19 26 26 H 1.48508 * 109.46903 * 329.99800 * 23 21 19 27 27 C 1.40144 * 107.88346 * 0.22334 * 4 3 2 28 28 N 1.30851 * 108.34792 * 359.61870 * 27 4 3 29 29 H 1.08998 * 109.47213 * 90.00131 * 1 2 3 30 30 H 1.08999 * 109.47493 * 209.99712 * 1 2 3 31 31 H 1.09002 * 109.46825 * 330.00335 * 1 2 3 32 32 H 1.07997 * 126.20860 * 0.05425 * 3 2 1 33 33 H 1.08003 * 119.95808 * 359.97438 * 7 6 5 34 34 H 1.07990 * 119.80133 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.83452 * 180.02562 * 9 8 7 36 36 H 1.07999 * 120.04388 * 180.02562 * 10 9 8 37 37 H 1.09010 * 109.46754 * 299.99701 * 15 14 12 38 38 H 1.08997 * 109.47232 * 59.99187 * 15 14 12 39 39 H 0.97003 * 120.00227 * 0.02562 * 18 16 15 40 40 H 0.96997 * 120.00298 * 179.97438 * 22 21 19 41 41 H 1.08004 * 125.82797 * 179.77127 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2648 1.0979 0.0000 4 6 3.5510 0.6676 -0.0006 5 8 4.6606 1.4575 -0.0013 6 6 5.8705 0.8554 -0.1112 7 6 6.5860 0.5153 1.0280 8 6 7.8178 -0.0971 0.9144 9 6 8.3490 -0.3778 -0.3344 10 6 7.6524 -0.0487 -1.4765 11 6 6.4063 0.5765 -1.3768 12 6 5.6584 0.9370 -2.5944 13 8 4.5751 1.4800 -2.5036 14 8 6.1752 0.6634 -3.8085 15 6 5.3836 1.0471 -4.9637 16 6 6.1163 0.6654 -6.2240 17 8 7.1989 0.1229 -6.1554 18 7 5.5681 0.9260 -7.4273 19 6 6.2349 0.5792 -8.5739 20 1 7.1993 0.0969 -8.5129 21 6 5.6700 0.8483 -9.8146 22 7 4.4968 1.4356 -9.8889 23 14 6.5782 0.3752 -11.3769 24 1 6.1915 -1.0017 -11.7765 25 1 6.2230 1.3240 -12.4626 26 1 8.0422 0.4272 -11.1334 27 6 3.5360 -0.7337 -0.0061 28 7 2.2897 -1.1323 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9361 2.1266 0.0008 33 1 6.1790 0.7309 2.0049 34 1 8.3708 -0.3594 1.8041 35 1 9.3134 -0.8576 -0.4126 36 1 8.0704 -0.2699 -2.4474 37 1 4.4224 0.5339 -4.9321 38 1 5.2206 2.1248 -4.9507 39 1 4.7020 1.3596 -7.4822 40 1 4.1026 1.6238 -10.7549 41 1 4.4048 -1.3752 -0.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801466348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:30 Heat of formation + Delta-G solvation = -47.279002 kcal Electronic energy + Delta-G solvation = -29127.477109 eV Core-core repulsion = 24782.225447 eV Total energy + Delta-G solvation = -4345.251662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.55082 -41.73716 -40.65413 -39.88046 -38.54291 -37.40218 -36.05945 -33.96042 -33.45866 -32.68193 -31.78088 -30.29492 -29.94310 -27.45940 -26.76529 -25.27019 -24.04990 -22.61929 -22.26814 -21.53083 -21.46899 -20.10517 -19.60870 -19.08464 -18.09638 -17.77032 -17.59348 -17.15739 -17.02244 -16.60511 -16.47283 -16.20542 -15.91804 -15.75189 -15.63275 -15.38685 -15.14144 -14.59497 -14.24075 -14.12429 -13.78882 -13.70442 -13.57755 -13.49284 -13.32707 -13.20232 -12.95270 -12.81062 -12.50036 -12.25569 -12.12926 -11.90865 -11.83784 -11.60283 -11.54304 -10.55398 -10.48745 -10.17950 -10.14837 -9.88455 -8.98124 -8.54618 -6.05688 -0.52515 0.10911 0.75347 1.27818 1.33958 1.42490 1.42955 1.48806 1.56195 1.68102 1.83060 2.25296 2.28347 2.73661 2.98380 3.10538 3.56192 3.67327 3.77230 3.81079 3.96592 4.03911 4.08176 4.16023 4.18368 4.27277 4.32314 4.40777 4.44132 4.56820 4.67706 4.70289 4.85184 5.11410 5.17509 5.24288 5.28198 5.34605 5.38562 5.70423 5.85853 5.97915 6.42023 6.47300 6.58851 6.62020 6.99639 7.35775 7.88845 8.62569 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.002667 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.412120 B =10497.287810 C =12368.930000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.368 5.368 3 C 0.036 3.964 4 C -0.036 4.036 5 O -0.248 6.248 6 C 0.135 3.865 7 C -0.136 4.136 8 C -0.051 4.051 9 C -0.122 4.122 10 C -0.059 4.059 11 C -0.163 4.163 12 C 0.495 3.505 13 O -0.509 6.509 14 O -0.339 6.339 15 C 0.075 3.925 16 C 0.438 3.562 17 O -0.615 6.615 18 N -0.557 5.557 19 C -0.339 4.339 20 H 0.086 0.914 21 C -0.009 4.009 22 N -0.916 5.916 23 Si 1.000 3.000 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.270 1.270 27 C -0.007 4.007 28 N -0.302 5.302 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.207 0.793 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.168 0.832 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.399 0.601 40 H 0.281 0.719 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 -1.040 25.956 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.156 5.156 3 C -0.109 4.109 4 C -0.088 4.088 5 O -0.159 6.159 6 C 0.092 3.908 7 C -0.154 4.154 8 C -0.069 4.069 9 C -0.140 4.140 10 C -0.078 4.078 11 C -0.164 4.164 12 C 0.341 3.659 13 O -0.399 6.399 14 O -0.255 6.255 15 C -0.002 4.002 16 C 0.225 3.775 17 O -0.501 6.501 18 N -0.194 5.194 19 C -0.468 4.468 20 H 0.104 0.896 21 C -0.210 4.210 22 N -0.556 5.556 23 Si 0.822 3.178 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.192 4.192 28 N -0.127 5.127 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.224 0.776 33 H 0.179 0.821 34 H 0.198 0.802 35 H 0.186 0.814 36 H 0.153 0.847 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.234 0.766 40 H 0.091 0.909 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.756 -1.936 25.839 26.182 hybrid contribution 0.182 0.860 -1.452 1.697 sum -3.575 -1.075 24.387 24.671 Atomic orbital electron populations 1.22253 0.70774 1.06519 1.04606 1.48642 1.07879 1.02260 1.56840 1.21961 0.88278 0.94808 1.05896 1.18797 0.86938 0.89107 1.13978 1.84091 1.10335 1.31703 1.89768 1.18933 0.85637 0.94844 0.91384 1.21651 0.96605 0.99429 0.97696 1.21820 0.93156 0.92642 0.99254 1.21647 1.01440 0.99827 0.91073 1.21641 0.91586 0.93072 1.01473 1.19628 0.98684 1.08664 0.89458 1.21609 0.84359 0.75968 0.84011 1.90835 1.21597 1.39817 1.87613 1.86583 1.49310 1.75276 1.14302 1.22471 0.93737 1.02308 0.81732 1.19982 0.87567 0.85148 0.84836 1.90512 1.23861 1.48498 1.87260 1.41734 1.20568 1.53082 1.04009 1.19745 1.04173 1.39009 0.83844 0.89646 1.26161 0.96825 0.95904 1.02068 1.69677 1.16919 1.41138 1.27833 0.84837 0.78242 0.78435 0.76282 1.19401 1.19330 1.19417 1.24098 0.96302 0.94163 1.04633 1.77183 1.01295 1.10056 1.24119 0.90099 0.88351 0.86099 0.77627 0.82068 0.80150 0.81422 0.84748 0.88290 0.87823 0.76643 0.90912 0.79774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.15 11.48 127.77 1.47 2.61 16 2 N -0.37 -8.26 4.04 -368.57 -1.49 -9.75 16 3 C 0.04 0.84 11.56 83.47 0.96 1.80 16 4 C -0.04 -1.01 5.70 22.13 0.13 -0.88 16 5 O -0.25 -7.17 8.65 -14.98 -0.13 -7.30 16 6 C 0.14 3.44 4.78 22.88 0.11 3.55 16 7 C -0.14 -2.22 9.98 22.34 0.22 -2.00 16 8 C -0.05 -0.58 10.03 22.30 0.22 -0.36 16 9 C -0.12 -1.82 10.02 22.24 0.22 -1.59 16 10 C -0.06 -1.43 9.61 22.53 0.22 -1.21 16 11 C -0.16 -4.76 5.89 -20.01 -0.12 -4.88 16 12 C 0.49 18.21 7.89 70.23 0.55 18.76 16 13 O -0.51 -20.01 14.00 26.77 0.37 -19.64 16 14 O -0.34 -13.86 9.01 -50.24 -0.45 -14.32 16 15 C 0.07 3.08 5.95 71.24 0.42 3.50 16 16 C 0.44 22.29 7.86 87.66 0.69 22.98 16 17 O -0.61 -35.75 16.08 15.73 0.25 -35.50 16 18 N -0.56 -29.43 5.29 -306.98 -1.62 -31.06 16 19 C -0.34 -19.35 9.68 84.04 0.81 -18.53 16 20 H 0.09 5.15 7.16 -2.91 -0.02 5.12 16 21 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 22 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 23 Si 1.00 42.44 29.55 68.60 2.03 44.47 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 C -0.01 -0.19 11.15 85.30 0.95 0.76 16 28 N -0.30 -8.43 12.57 -56.83 -0.71 -9.15 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.21 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.18 0.52 8.06 -2.92 -0.02 0.50 16 35 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 36 H 0.13 3.62 7.61 -2.91 -0.02 3.59 16 37 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 38 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 39 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 40 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.19 4.55 7.77 -2.91 -0.02 4.53 16 Total: -1.00 -80.97 372.30 6.23 -74.75 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.36 Total: 32.03 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 7.33 Total: 24.51 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.54 Total: -99.00 kcal Atomic # 8 Polarization: -76.80 SS G_CDS: 0.05 Total: -76.75 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -80.97 6.23 -74.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801466348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.467 kcal (2) G-P(sol) polarization free energy of solvation -80.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds